Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00497 and RBAM_003060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_00497___ycdC.1.9828.seq
# -bsequence dna-align/RBAM_003060___ycdC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00497___ycdC-RBAM_003060___ycdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00497___ycdC-RBAM_003060___ycdC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00497___ycdC
# 2: RBAM_003060___ycdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1594
# Identity: 966/1594 (60.6%)
# Similarity: 966/1594 (60.6%)
# Gaps: 320/1594 (20.1%)
# Score: 2896.5
#
#
#=======================================
BSNT_00497___ 1 ATGAAAGTAACAGAAAGAATCTCGAAAAACAATGACAATAATAGAAAAGG 50
RBAM_003060__ 0 -------------------------------------------------- 0
BSNT_00497___ 51 ACCTTTCTTCACTTTAAATGAAGAAAGGTCTTTTTATATAATAAACAGGA 100
RBAM_003060__ 0 -------------------------------------------------- 0
BSNT_00497___ 101 TTCTCTTTGTCGTAGACTCTTTGAAAGGGATGACTTCATTGGTTAATAAA 150
|||||..|||||.|.||..||
RBAM_003060__ 1 -----------------------------ATGACCCCATTGCTGAAAGAA 21
BSNT_00497___ 151 CAGCTGAAAAAGAAGGCGCAGGAGATCGGAAATGTACCGACGCATTATGA 200
||.||||.|||.||.||||.|||.|||||.||..|||||.||.|.|||||
RBAM_003060__ 22 CATCTGAGAAAAAAAGCGCTGGAAATCGGGAACATACCGCCGGACTATGA 71
BSNT_00497___ 201 GCTTGAGATAGAAGATTACGACCAAAAGCAAAAGAAGAACGGGCAGGCAT 250
||||||.|||||||||||.||..||||.|||||.|.|| |.||.|
RBAM_003060__ 72 GCTTGAAATAGAAGATTATGATGAAAAACAAAAAACGA------AAGCCT 115
BSNT_00497___ 251 ATTTTATCTGGAAGGACCCTAAAGATCCGGA-AAAGCAC-ATTACAGTTG 298
|||.|||.|||||.||.|.|||..||||||| ||| || .|.||..|||
RBAM_003060__ 116 ATTATATATGGAAAGATCGTAACCATCCGGATAAA--ACGGTCACGATTG 163
BSNT_00497___ 299 AACTTAGAAATGACGGCGCTTTGCTCACCTTTT----CAACAACTGTCCG 344
|.||..|..|.|||||..|||||||.||||.|| ||||.||||||||
RBAM_003060__ 164 AGCTGGGCGACGACGGATCTTTGCTTACCTATTCACGCAACGACTGTCCG 213
BSNT_00497___ 345 CTCCGAGACAGACAAACAACTTCCAGATGCCGAGCTGAAGCTGACGGCTC 394
|...||||||..||.||..||||.|||||..|.|||||||||||||
RBAM_003060__ 214 ----GGTTCAGACATGCAGCTGTCAGACGCCGAATTAAAGCTGACGGCTC 259
BSNT_00497___ 395 TTCAGTTTGCCGCTGTCCATCATCCCGGC--ACATTTATGAATTTTCAT- 441
|||.||||||.||....||.| .||.|| ||.|||||||| ||||||
RBAM_003060__ 260 TTCGGTTTGCGGCGAGACACC--GCCCGCTTACTTTTATGAA-TTTCATC 306
BSNT_00497___ 442 TTTCAAGGC-AAGGAAGAAC-----GGGGGCAGCACATCCGGTTTGTCTA 485
|||| |||| |.|||||||| |||.| ||||||.|||.||||
RBAM_003060__ 307 TTTC-AGGCGAGGGAAGAACGCAATGGGTG-----CATCCGATTTATCTA 350
BSNT_00497___ 486 TACCAAAATGGAGCTGGGGCTTCCGATTCCCAATTCAGGCTTTTTAATTG 535
|||.||||..|.|||.||.|..|||.|||||.|||||||.|||||..|||
RBAM_003060__ 351 TACAAAAAAAGTGCTCGGCCGGCCGCTTCCCGATTCAGGTTTTTTCGTTG 400
BSNT_00497___ 536 ATATGACACGCAGCGG--TCAGGTTGTCCACTTTCTATATTACGGGG--A 581
||.|.||..|.||||| || ||.||.||.|||.|.|||||||||| |
RBAM_003060__ 401 ATGTAACCAGAAGCGGCTTC--GTCGTGCAGTTTATCTATTACGGGGATA 448
BSNT_00497___ 582 AGGGCATAAAG---CCGAAGTTCCGACGGA---ATTTGTAGCAAAA---- 621
|||| |.||| ||| ||| |||| |||.||.| |
RBAM_003060__ 449 AGGG--TGAAGCGCCCG----TCC--CGGAAACATTCGTCG----ATCGG 486
BSNT_00497___ 622 GAGAAGGTTGTGTCCCATTA----------CTTAAACACAATGTCTTTTG 661
||.||.||.||.||.||||| ||.|.|..||.|.||.|.|
RBAM_003060__ 487 GAAAAAGTCGTCTCGCATTATATGAGTGTGCTGACATTCAGTCTCGTCT- 535
BSNT_00497___ 662 AGCTGATGTACGATGTCA---TTGATGGCGAACAGGAACCAAGGCTTGTA 708
.|||||| .|||| |||| |||.| .|||..|.||.||.
RBAM_003060__ 536 --ATGATGT----GGTCAATTTTGA----GAAAA--TACCGCGTCTCGTC 573
BSNT_00497___ 709 TATGAACCGATTCTCCCGGGATACAGCTATCCCGCAGATGTAGACGAAAT 758
||||||||||||||.||||..|||||||||||.||.|.||..||.||.||
RBAM_003060__ 574 TATGAACCGATTCTGCCGGCTTACAGCTATCCGGCCGGTGAGGATGATAT 623
BSNT_00497___ 759 TGTGCCCGACCAGCA---TATCGCAGATGAAAGAAT-AG-----AAAACA 799
.|||||.||.||||| |..||.||| .|.|||| || ||||
RBAM_003060__ 624 CGTGCCGGATCAGCAGCTTTGCGAAGA--CAGGAATGAGCCGGCAAAA-- 669
BSNT_00497___ 800 CGGCGCCACTGCCGCCGCTTCAGAACA-----AGGAAGAAGTTGATATAT 844
||.||.| ||||.|..||||| .|||| ||
RBAM_003060__ 670 -----CCGCTTC--CCGCGTTTGAACATAAACGGGAA-----------AT 701
BSNT_00497___ 845 TTGCC--------TTGCTGGGTTTTACCTCTGATATG---CAGA-AAGTC 882
..||| ||..||||.||||||||.|||||| |||| ..|.|
RBAM_003060__ 702 CAGCCTGGATGAATTAATGGGGTTTACCTCGGATATGGTTCAGACGCGCC 751
BSNT_00497___ 883 AGTGAAAGAGACTTTGGAGAACAAATTGGAAGCACATGGCGCAGAGGCGC 932
.| .|.||..|.||.||..|.||.||||..||||||||.|.|||..|
RBAM_003060__ 752 GG----CGCGATCTCGGGGATGAGATCGGAACGACATGGCGGAAAGGATC 797
BSNT_00497___ 933 TGCGCCGGAGCGTAAGGATTTAAGCATAAGAAGCTATTTTGAAACGAGAA 982
.|..|||||.||.||.|||||.||.||...||||||||||||||..||.|
RBAM_003060__ 798 GGTTCCGGAACGGAAAGATTTGAGTATCGAAAGCTATTTTGAAAGCAGCA 847
BSNT_00497___ 983 ATAAAAACACAATCAAAATGAAGACGGA-TAAAAGAACCGGAAAATTAAA 1031
|.|||||.|||||.||.|||||.||||| .||||||...|||||||.|
RBAM_003060__ 848 ACAAAAATACAATGAAGATGAAAACGGACAAAAAGACAGGGAAAATGA-- 895
BSNT_00497___ 1032 AGCAGCGCTT----TCTTTTATGGAGC-----GGCCGAACAACCGCC--- 1069
|||| ||| ||||||||.|||| |||| |.|||
RBAM_003060__ 896 --CAGC-CTTTAAATCTTTTATTGAGCATCAGGGCC------CGGCCTTT 936
BSNT_00497___ 1070 AATGCTCCACGGAAGAATGCCAAGAGATAGCGCTTCAATTTTTGTATGCC 1119
.|| ||..|||||||.||..|.|...|.||||||||||||||.||....
RBAM_003060__ 937 TAT--TCTGCGGAAGAGTGTGAGGCCGTCGCGCTTCAATTTTTATACAAG 984
BSNT_00497___ 1120 CTCTATCCGAGAGCGGCTGAGTTTTTCAGGGTGAATCCCGTCCG--AATT 1167
||.|||||||||||||..||||||||.|...|||| |||| |.| ||..
RBAM_003060__ 985 CTTTATCCGAGAGCGGACGAGTTTTTTAAAATGAA-CCCG-CTGAAAACG 1032
BSNT_00497___ 1168 GATGAAAGAGGGAGAGTCCGCAACCATTTTTCTGTCTGGTATAAAGGA-G 1216
||.|.|||.||.||..|||||..|||||||||..|.|||.|| .|||| .
RBAM_003060__ 1033 GACGGAAGGGGCAGGTTCCGCTTCCATTTTTCCATATGGCAT-CAGGATA 1081
BSNT_00497___ 1217 TGCCGCTGCGGTTCGGCGCTGCCCGCATCATTGTCAATCCGGAAACTGGG 1266
|.||||||||||||||||||||..|.||..||||||.|||.|.|||.|||
RBAM_003060__ 1082 TTCCGCTGCGGTTCGGCGCTGCGAGAATACTTGTCAGTCCCGTAACGGGG 1131
BSNT_00497___ 1267 -TTGATTGACGCTTTTATGGCGCCTGATATTGAACCTGAACAATTGGAAG 1315
||| |.||.||||..|||||||||||.|||||.||.||.||..||||..
RBAM_003060__ 1132 CTTG-TGGAAGCTTACATGGCGCCTGACATTGACCCGGAGCAGCTGGAGA 1180
BSNT_00497___ 1316 CGATAAATCACAG-GCCGGATGTTTCCGCTGAAGAAGCGAGAGAAGCGTT 1364
.|||.|||| |.| |||||..|||.|..|.||||||||.|..|..||.||
RBAM_003060__ 1181 AGATCAATC-CGGTGCCGGCCGTTACTCCCGAAGAAGCAAAGGCCGCTTT 1229
BSNT_00497___ 1365 TTTAGCCGCTTTTGATGTGAAGCTGGAATGGCAGCCTGACTTTACTG--- 1411
||||.|||.|||..||.||..||||||.|||||||..||.||||| |
RBAM_003060__ 1230 TTTATCCGATTTCCATCTGCGGCTGGAGTGGCAGCGCGATTTTAC-GCCG 1278
BSNT_00497___ 1412 -CAGGCAGTGACCAGCACTACAAACTTGTCTATAAGCCGGTTTACCCTTC 1460
|.||||.||| ||.| ||.||.|||||.||.|.|||.||.||.|||.|
RBAM_003060__ 1279 TCCGGCAATGA--AGGA-TATAAGCTTGTGTACAGGCCTGTCTATCCTCC 1325
BSNT_00497___ 1461 CTATATTGATGCGCACATAAGGAAAAAGAAAAGGCTGTGA---- 1500
.||.|||||||||||.|...|.|||||||||||| |.|.|
RBAM_003060__ 1326 GTACATTGATGCGCAAAAGCGAAAAAAGAAAAGG-TTTTATTAG 1368
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