Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00482 and RBAM_003020
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_00482___yccF.1.9828.seq
# -bsequence dna-align/RBAM_003020___yccF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00482___yccF-RBAM_003020___yccF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00482___yccF-RBAM_003020___yccF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00482___yccF
# 2: RBAM_003020___yccF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1114
# Identity: 844/1114 (75.8%)
# Similarity: 844/1114 (75.8%)
# Gaps: 80/1114 ( 7.2%)
# Score: 3144.5
#
#
#=======================================
BSNT_00482___ 1 GTGGGAAAAGTGAAACGAAATGCCCCTTGCCCATGCGGCAGCGGCAAGAA 50
|||||||||||||||.||||||||||||||||||||||||||||.|||||
RBAM_003020__ 1 GTGGGAAAAGTGAAAAGAAATGCCCCTTGCCCATGCGGCAGCGGGAAGAA 50
BSNT_00482___ 51 ATATAAAAAATGCTGCGGAAGTAAAGTTGTCGACTTCCCGGCGGAACTAG 100
|||||||||||||||||||||.||||..|..|.|.|.|||||.||..|.|
RBAM_003020__ 51 ATATAAAAAATGCTGCGGAAGCAAAGAAGCTGCCATTCCGGCAGACATCG 100
BSNT_00482___ 101 CGGCAAAAGAAGCGAAACAAATTCAGGAAGACTTAGTGGAGTATGCCTTC 150
|||||||||||||||||||.|||||||||..|.||.|||||||.|||||.
RBAM_003020__ 101 CGGCAAAAGAAGCGAAACAGATTCAGGAAAGCCTAATGGAGTACGCCTTT 150
BSNT_00482___ 151 ACAGTACATAGAGAAAGCATTTCAGGCTTTATCAACCAGCATGATTTTCT 200
||||.|||||||||..||||.|||...|||||.||||||||.|..||..|
RBAM_003020__ 151 ACAGCACATAGAGACGGCATATCATCATTTATTAACCAGCACGCGTTCAT 200
BSNT_00482___ 201 TTCTGCTATGGACAGACAGACGAAAGACATCAGCGTATTTAACTTAGGAA 250
|.|.|...|||||||||||||.|||||||||.|.||.||.|||.|.||.|
RBAM_003020__ 201 TACGGAGCTGGACAGACAGACAAAAGACATCGGAGTCTTCAACCTCGGCA 250
BSNT_00482___ 251 TCTGGGGAATCTTCTTCCACCCGCTTGCTGGTGAGAAGACAATCTTCGAA 300
||||||||||.|||||||..|||||.||.||.|..|||||.||.||.|||
RBAM_003020__ 251 TCTGGGGAATTTTCTTCCGTCCGCTGGCAGGCGGCAAGACGATTTTTGAA 300
BSNT_00482___ 301 GAGTACCTTCAGAAAAAAGGCGATTCG--ATCACTCGTCCGAAAACGCGT 348
||.||.|||||||||||||.|| .|| ||||..||.||||||||.||.
RBAM_003020__ 301 GAATATCTTCAGAAAAAAGCCG--GCGGCATCAACCGCCCGAAAACACGG 348
BSNT_00482___ 349 GAGATCGTAGAATCATGGCAGAGCATGACGCCTG-CTTTAT--TGCTGCT 395
||.|||||.|||||||||.|.||||||||.|||| |.|||| |||| |
RBAM_003020__ 349 GAAATCGTTGAATCATGGAAAAGCATGACACCTGCCGTTATGGTGCT--T 396
BSNT_00482___ 396 GAAGGACCTGAAGGAAGGCATCATTCACTTTGAAGATGTGATTACGGCA- 444
||| ||..|||..|||||.||.||||||||||||||||||||.|| ||
RBAM_003020__ 397 GAA-GATGTGAGAGAAGGAATGATTCACTTTGAAGATGTGATGAC--CAA 443
BSNT_00482___ 445 -AAACAATTCGAAGTGGAAATGGACGCCAGCAATCAAGACCTTCCTCCAG 493
|||||||||.|||||||||||||||.||||.|.||.||.|||||.||.|
RBAM_003020__ 444 GAAACAATTCAAAGTGGAAATGGACGTCAGCCAGCAGGATCTTCCGCCGG 493
BSNT_00482___ 494 TGGGAAGCCTGATTCTTGGATACCCAATCCACGAAGCGGAAAAAGCAGAA 543
.|||||||||||||||.||.||.||.||||||||||||||||||||.||.
RBAM_003020__ 494 CGGGAAGCCTGATTCTCGGCTATCCGATCCACGAAGCGGAAAAAGCGGAG 543
BSNT_00482___ 544 TTCTTCATGCAGTTCACGATCTTCCCGGTGAAGAGAACAGAAGCGCTGAT 593
|||||||||||.||.|||||||||||.||||||.|..|.|||||.||.||
RBAM_003020__ 544 TTCTTCATGCAATTTACGATCTTCCCTGTGAAGCGGGCCGAAGCTCTAAT 593
BSNT_00482___ 594 CAGCAAGGTGAAGAAATATGCGGATGCC---GCTGT----GAAGGACGGC 636
||||||.|| ||||.|.||||.|||| |||.| ||||||
RBAM_003020__ 594 CAGCAAAGT---GAAAAAGGCGGCTGCCCCGGCTCTTGCGGAAGGA---- 636
BSNT_00482___ 637 AAAACGCCGGAGGACTTCATGAAGCAGGAA---TTCAACAACGTTCTGTT 683
|||.||||.|||..|||.|| ||||||| |||.|||..||.|||..
RBAM_003020__ 637 AAATCGCCTGAGCGCTTTAT---GCAGGAAAACTTCGACATTGTGCTGGC 683
BSNT_00482___ 684 CGCGTTGTTAGCTGAGAA-AGATGAAGAGCCAAAAGCAG--------AG- 723
|||..|.|||| ||| .|..|||||||| ..||||| ||
RBAM_003020__ 684 CGCTCTTTTAG----GAACGGCGGAAGAGCC-TGAGCAGGCTGCTGAAGA 728
BSNT_00482___ 724 AAAGCGGAAGTAAGCACTGTTGAGTGGGCAAACGACTTGGAGAAAGAAAC 773
|||.|.|| || ||||||||.||||||.|||||||.|||||
RBAM_003020__ 729 AAAACAGA------CA-----GAGTGGGCCAACGACATGGAGAAGGAAAC 767
BSNT_00482___ 774 CGCTGCGGCTATTGAAGAAGGCATGAGCGGGGAAGAGTATCCGACTGAAT 823
.||.|..||.||||||.|||||.||||||||||.||.||.|||.||||..
RBAM_003020__ 768 GGCAGACGCCATTGAAAAAGGCCTGAGCGGGGATGAATACCCGGCTGAGC 817
BSNT_00482___ 824 TGATCCCAGCTGTTATTGCCATC--TGGAAAACATTCTGCGAGAAAAAAT 871
||.|.||.||.||.|||| ||| ||||||||.|||||.|..||||||.
RBAM_003020__ 818 TGGTTCCGGCCGTAATTG--ATCTGTGGAAAACGTTCTGTGTCAAAAAAA 865
BSNT_00482___ 872 CACCTGTC-ATCAGAAAGCCGGAAGCTTTTGCGGCGGCAGTTGAATATTA 920
|||| |.| |||||||||||.||||||||.||||||||.||.||||||||
RBAM_003020__ 866 CACC-GACGATCAGAAAGCCTGAAGCTTTCGCGGCGGCGGTCGAATATTA 914
BSNT_00482___ 921 TGTAAAC-GCGATTTCTCTTAACGGCGCGTCCGTTTCCCAGGCTAAACTG 969
.|||||| || ||||||||.|||||||||||||||||.||.||.||.|||
RBAM_003020__ 915 CGTAAACAGC-ATTTCTCTGAACGGCGCGTCCGTTTCTCAAGCCAAGCTG 963
BSNT_00482___ 970 GCGAAAAAATACGGCGTCAGTGCATCAACGATTTCCAGCCGTTACAAAGA 1019
|||||.||.|||||||||||.||.|||||||||||||||||.||.||.||
RBAM_003020__ 964 GCGAAGAAGTACGGCGTCAGCGCCTCAACGATTTCCAGCCGCTATAAGGA 1013
BSNT_00482___ 1020 AATTGAAAG------CACGCTGCAAGATGAAGCAGATCGTTTTGCACAAG 1063
|||.||..| |||| ||||||||.||.||.||.||...||
RBAM_003020__ 1014 AATCGAGGGTGCTCTCACG------GATGAAGCCGAACGCTTCGCCGCAG 1057
BSNT_00482___ 1064 CGTTATCCTCATAA 1077
|..|..|.||.|||
RBAM_003020__ 1058 CTCTGACATCTTAA 1071
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