Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00475 and RBAM_002990

See Amino acid alignment / Visit BSNT_00475 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:13
# Commandline: needle
#    -asequence dna-align/BSNT_00475___lmrA.1.9828.seq
#    -bsequence dna-align/RBAM_002990___lmrA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00475___lmrA-RBAM_002990___lmrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00475___lmrA-RBAM_002990___lmrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00475___lmrA
# 2: RBAM_002990___lmrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 591
# Identity:     415/591 (70.2%)
# Similarity:   415/591 (70.2%)
# Gaps:          48/591 ( 8.1%)
# Score: 1396.5
# 
#
#=======================================

BSNT_00475___      1 ATGAGTTATGGAGATTCCCGTGAGAAAATCCTTTCGGCAGCTACCCGGCT     50
                     |||||.|||||||||||.|||||.||||||||..|.||.||.|||.||||
RBAM_002990__      1 ATGAGCTATGGAGATTCTCGTGAAAAAATCCTCGCCGCGGCAACCAGGCT     50

BSNT_00475___     51 TTTTCAGCTGCAAGGGTATTACGGCACGGGGCTGAACCAGATTATAAAGG    100
                     .||||||||.||.|||||||||||||||||||||||.||||||||.||.|
RBAM_002990__     51 GTTTCAGCTTCAGGGGTATTACGGCACGGGGCTGAATCAGATTATTAAAG    100

BSNT_00475___    101 AAAGCGGCGCGCCTAAAGGCTCTCTTTACTACCACTTTCCCGGGGGTAAA    150
                     |||||||.|||||.|||||.|||||||||||.||.|||||.|..||.|||
RBAM_002990__    101 AAAGCGGTGCGCCGAAAGGTTCTCTTTACTATCATTTTCCGGACGGCAAA    150

BSNT_00475___    151 GAACAGCTTGCGATCGAAGCCGTGAATGAGATGAAGGAGTATATCCGTCA    200
                     ||.|||||.||.||.||.||.||.|||||.||||...|.|||||||||..
RBAM_002990__    151 GAGCAGCTCGCCATTGAGGCTGTCAATGAAATGAGCCATTATATCCGTAT    200

BSNT_00475___    201 GAAAATCGCGGACTGCATGGA-----ATCCTACACCGATCCAGCGGAAGG    245
                     ||||||....||..||.|.||     |||||     |||||.||||||.|
RBAM_002990__    201 GAAAATAAAAGAAAGCCTTGATGCCCATCCT-----GATCCTGCGGAAAG    245

BSNT_00475___    246 CATTCAAGCCTTTTTGAAGGAGCTCTCCTGCCAGTTTTCATGTACAGAAG    295
                     |||||||||.|||||..||||..|.||..||||.||..|||||.|.||..
RBAM_002990__    246 CATTCAAGCGTTTTTACAGGACTTATCAAGCCAATTCACATGTCCGGAGA    295

BSNT_00475___    296 ACATTGAAGGCTTGCCTGTGGGCTTGCTAGCGGCTGAGACGTCATTGAAA    345
                     ||.|||||||.||.|||||.||.||.||.||.||.|||||..|.||.||.
RBAM_002990__    296 ACTTTGAAGGGTTTCCTGTCGGTTTACTGGCTGCCGAGACTGCTTTAAAG    345

BSNT_00475___    346 AGCGAACCGTTGC-GCGAAGCCTGTCATGAA--GCCTACAAAGAATGGGC    392
                     ||||||..|.|.| || |.||||||||  ||  ||.||..|.|||||||.
RBAM_002990__    346 AGCGAAAAGCTCCAGC-AGGCCTGTCA--AAGCGCTTATCAGGAATGGGA    392

BSNT_00475___    393 CTCTGTGTATGAGGAAAAACTGCGGCAGA----CTGG-----CTGCAGCG    433
                     ...|.|||..|.||..|||.||    |||    |.||     |||..|.|
RBAM_002990__    393 GAATCTGTTCGCGGGCAAATTG----AGATCAGCCGGTTTTTCTGATGAG    438

BSNT_00475___    434 AGAGCCGTGCAAAAGAAGCCAGCACTGTGGTTAACGCGATGATTGAAGGC    483
                     |.|||.|.|     |||..|||||||||..|.||.||..||||.||||||
RBAM_002990__    439 AAAGCGGCG-----GAAATCAGCACTGTTTTAAATGCCTTGATAGAAGGC    483

BSNT_00475___    484 GGCATCCTTTTATCTTTGACGGCAAAAA--ACAGTACGCCGCTCCTTCAT    531
                     ||||||.||.|.||.||  .|.||||||  |||..|.||||.||||.|||
RBAM_002990__    484 GGCATCATTGTGTCCTT--AGCCAAAAAAGACAAAATGCCGATCCTCCAT    531

BSNT_00475___    532 ATCTC----CAGCTGCATTCCTG-ACCTGCTGAAGAGATAA    567
                     ||.||    ||     |.|||.| ||||||||||||.||||
RBAM_002990__    532 ATTTCTAAACA-----AATCCCGAACCTGCTGAAGACATAA    567


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