Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00474 and RBAM_002980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_00474___lmrB.1.9828.seq
# -bsequence dna-align/RBAM_002980___lmrB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00474___lmrB-RBAM_002980___lmrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00474___lmrB-RBAM_002980___lmrB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00474___lmrB
# 2: RBAM_002980___lmrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1444
# Identity: 1116/1444 (77.3%)
# Similarity: 1116/1444 (77.3%)
# Gaps: 20/1444 ( 1.4%)
# Score: 4244.5
#
#
#=======================================
BSNT_00474___ 1 TTGGAAACAACAGCTAAAGCATCTCAGCAATACAAAGTGATGCCGATTAT 50
|||||| ||| |||.|..|.||..|.|||||.|||||.||||||||.||
RBAM_002980__ 1 TTGGAA--AAC-GCTCAGCCTTCCAAACAATATAAAGTCATGCCGATCAT 47
BSNT_00474___ 51 GATTTCCTTGCTGTTGGCCGGTTTTATCGGCATGTTCAGTGAAACAGCGC 100
||||||.||.|||..|||.||.|||||||||||||||||||||||.||||
RBAM_002980__ 48 GATTTCTTTACTGACGGCAGGGTTTATCGGCATGTTCAGTGAAACGGCGC 97
BSNT_00474___ 101 TGAATATTGCGTTAACCGACCTTATGAAGGAATTGAACATTACAGCGGCA 150
|||||||.||..|.||.|||||.||||||||.||..|.||.||..|.||.
RBAM_002980__ 98 TGAATATCGCCCTGACTGACCTGATGAAGGAGTTACATATCACTCCTGCG 147
BSNT_00474___ 151 ACCGTCCAATGGTTAACGACGGGCTACCTGCTTGTACTCGGTATCCTTGT 200
||||||||.|||.|.|||||||||||.|||||.||.||||||||.|||||
RBAM_002980__ 148 ACCGTCCAGTGGCTGACGACGGGCTATCTGCTCGTTCTCGGTATTCTTGT 197
BSNT_00474___ 201 TCCTGTTTCAGGACTGCTGTTGCAGTGGTTCACAACAAGACAGCTTTTTA 250
.||.||.||.||.|||||.|||||.|||||.||.||.||||||||.||||
RBAM_002980__ 198 CCCGGTATCGGGTCTGCTTTTGCAATGGTTTACGACGAGACAGCTGTTTA 247
BSNT_00474___ 251 CCGTGTCACTTATCTTTTCAATTTTAGGTACATTCATTGCGGCGCTTGCG 300
.|||.||||||...|||||.|||.|.||.||..|.|||||.|||||||||
RBAM_002980__ 248 TCGTTTCACTTGCTTTTTCCATTATCGGCACGCTGATTGCAGCGCTTGCG 297
BSNT_00474___ 301 CCGAGCTTCTCGTTTTTATTAGCGGCAAGGATCGTTCAGGCACTTGGAAC 350
||||||||..|||||.|.||.|||||.||.|||||.|||||..|.|||||
RBAM_002980__ 298 CCGAGCTTTCCGTTTCTTTTGGCGGCGAGAATCGTGCAGGCTTTAGGAAC 347
BSNT_00474___ 351 CGGTCTTTTACTGCCCCTAATGTTTAACACAATCTTGGTGATTTTCCCGC 400
|||.||..|.|||||.||.||||||||.||||||.|.||.||.|||||||
RBAM_002980__ 348 CGGGCTGCTGCTGCCGCTGATGTTTAATACAATCCTCGTCATCTTCCCGC 397
BSNT_00474___ 401 CTCATAAACGGGGTGCCGCAATGGGAACGATCGGGCTTGTCATTATGTTC 450
|.|||||.||.||.||.||.|||||.|||||||||||||||||.||||||
RBAM_002980__ 398 CGCATAAGCGCGGAGCGGCGATGGGGACGATCGGGCTTGTCATCATGTTC 447
BSNT_00474___ 451 GCGCCCGCCATCGGCCCAACTTTCTCAGGATTGGTTCTGGAGCATCTCAA 500
||.||.||.|||||.||.||.||.|||||..|.||..|.||||||.|.||
RBAM_002980__ 448 GCTCCTGCGATCGGTCCGACATTTTCAGGGCTTGTGTTAGAGCATTTGAA 497
BSNT_00474___ 501 CTGGCACTGGATTTTTTGGATCTCTCTTCCGTTCCTTGTGCTGGCGCTTG 550
||||||.||||||||.|||||.||.||.|||||.||||||.||||.|||.
RBAM_002980__ 498 CTGGCATTGGATTTTCTGGATTTCCCTGCCGTTTCTTGTGTTGGCTCTTT 547
BSNT_00474___ 551 TTTTCGGTATCGCATATATGCAGAATGTATCTGAAACGACAAAGCCGAAA 600
|.|||||.|||||.||.||||||||.||.|||||.|..|||||.||||||
RBAM_002980__ 548 TATTCGGCATCGCCTACATGCAGAACGTGTCTGACATTACAAAACCGAAA 597
BSNT_00474___ 601 ATCGATGTATTGTCTATCATCCTGTCGACGATTGGCTTCGGCGGCATTGT 650
||.||.||..|.||.||.||.|||||.|||||.||.|||||||||||.||
RBAM_002980__ 598 ATTGACGTGCTTTCCATTATTCTGTCTACGATCGGGTTCGGCGGCATCGT 647
BSNT_00474___ 651 GTTCGGATTCAGCAACGCGGGTGAAGGCTCCGGGGGATGGTCCAGCCCGA 700
.||||||||||||||.|||||.|||||.||.|..||.|||||.|||||||
RBAM_002980__ 648 ATTCGGATTCAGCAATGCGGGCGAAGGATCAGACGGCTGGTCAAGCCCGA 697
BSNT_00474___ 701 CTGTTATCGTGTCGCTGATTGTCGGCGTTGTCGGCCTTATCCTATTTTCA 750
|.|||||||..|||||.|.||||||.|...|||..||.|||.|||||||.
RBAM_002980__ 698 CGGTTATCGGTTCGCTCACTGTCGGTGCGATCGCGCTCATCTTATTTTCC 747
BSNT_00474___ 751 ATCCGCCAGCTGACAATGAAGCAGCCGATGATGAACCTCCGTGCGTTCAA 800
|||.|.|||||||||||||||||||||||||||||.||.||.||.|||..
RBAM_002980__ 748 ATCAGGCAGCTGACAATGAAGCAGCCGATGATGAATCTGCGCGCTTTCCG 797
BSNT_00474___ 801 ATACCCAATGTTTATTTTGGGTGTGATCATGGTGTTCATTTGTATGATGG 850
.||.||.||||||.||.|.|||||..|.||.||.||.||.||||||||||
RBAM_002980__ 798 CTATCCGATGTTTGTTCTAGGTGTCGTGATTGTATTTATCTGTATGATGG 847
BSNT_00474___ 851 TCATTCTGTCATCTATGCTGCTTCTGCCGATGTATCTGCAAGGCGG-CTT 899
|.||..|.|||.|.|||||.||..||||.||||||.|.|||.|||| ||.
RBAM_002980__ 848 TTATCTTATCAACAATGCTCCTATTGCCTATGTATTTACAAAGCGGACTG 897
BSNT_00474___ 900 AGTCCTGACTGCATTTGCATCTGGTCTTGTTCTCTTGCCGGGCGGTATTT 949
| |.|||||.||.|||.|.||.||.||..|.||..|||||||||||||||
RBAM_002980__ 898 A-TGCTGACGGCGTTTACGTCCGGGCTCATCCTGCTGCCGGGCGGTATTT 946
BSNT_00474___ 950 TAAATGGATTTATGTCCCCTGTTACAGGCCGCTTGTTCGATAAATACGGG 999
||||.||.||||||||.||.||.||.||.||..||||.||||||||||||
RBAM_002980__ 947 TAAACGGCTTTATGTCTCCGGTGACGGGGCGTCTGTTTGATAAATACGGG 996
BSNT_00474___ 1000 CCGAAATGGCTTGTCATTCCGGGATTTGTGATTGTCACTG---TTGTACT 1046
|||||.||||||||||||||.||.|||||.| ||||.| .||..||
RBAM_002980__ 997 CCGAAGTGGCTTGTCATTCCCGGGTTTGTCA---TCACGGCAACTGCGCT 1043
BSNT_00474___ 1047 ATGGTTCTTCTCAAATGTTACGAC--CGCTTCAACGGCTGTGCTGATTAT 1094
.|.|||.||||||||..||| || ||||||||||||..|.||||||.|
RBAM_002980__ 1044 TTCGTTTTTCTCAAACATTA--ACGGCGCTTCAACGGCGCTTCTGATTGT 1091
BSNT_00474___ 1095 CATCCTGCACACCTGCTTGATGATCGGGATTTCTATGATCATGATGCCTG 1144
|...||.|||||.|||.||||||||||.|||||.||||||||||||||.|
RBAM_002980__ 1092 CGCGCTTCACACATGCCTGATGATCGGCATTTCCATGATCATGATGCCGG 1141
BSNT_00474___ 1145 CGCAAACAAACGGTTTAAACCAACTGCCGCGCGAATTTTATCCAGACGGC 1194
|||||||.|||||.||||||||.|||||||..|||||||||||.|||||.
RBAM_002980__ 1142 CGCAAACGAACGGCTTAAACCAGCTGCCGCCGGAATTTTATCCGGACGGA 1191
BSNT_00474___ 1195 ACCGCCATTATGAACACGCTGCAGCAAATGGCCGGCGCTATCGGAACAGC 1244
||.|||||||||||.|||||.|||||.|||||||||||.|||||.||.||
RBAM_002980__ 1192 ACGGCCATTATGAATACGCTCCAGCAGATGGCCGGCGCAATCGGCACTGC 1241
BSNT_00474___ 1245 GGTTGCGGTCAGCATTATGGCTGCAGGCCAGCATGATTATATGAGTACAG 1294
|||.|||||||||||.|||||.||.||.||..|..||||||||||.||.|
RBAM_002980__ 1242 GGTGGCGGTCAGCATCATGGCAGCCGGGCAAAAGAATTATATGAGCACCG 1291
BSNT_00474___ 1295 TTAAAAACCCTGCCGATCCGGCAGTCAT-CCCGCAAGCTTTGACAGCAGG 1343
|.||||||||....|||||..|.| ||| |.|.||.||..|||..||.||
RBAM_002980__ 1292 TGAAAAACCCGAATGATCCTTCCG-CATACTCTCACGCGCTGATTGCGGG 1340
BSNT_00474___ 1344 CGTACAGCACGCATTTGTGTTTGCAATGATTGTTGCCATTATCGGTTTAA 1393
|||.||||||||.|||.|.||.||.||||||||.||..|||||||.||.|
RBAM_002980__ 1341 CGTCCAGCACGCCTTTATCTTCGCGATGATTGTCGCTGTTATCGGCTTGA 1390
BSNT_00474___ 1394 TTGGCGCTTTCTTTATGAAGCGCGTGAAGGTAGATCATTAA--- 1434
|..||||.|||||||||||.||.||.||.||..||||.|.|
RBAM_002980__ 1391 TCAGCGCCTTCTTTATGAAACGGGTCAAAGTGAATCACTCATAA 1434
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