Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00472 and RBAM_002970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_00472___ycbU.1.9828.seq
# -bsequence dna-align/RBAM_002970___ycbU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00472___ycbU-RBAM_002970___ycbU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00472___ycbU-RBAM_002970___ycbU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00472___ycbU
# 2: RBAM_002970___ycbU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1210
# Identity: 779/1210 (64.4%)
# Similarity: 779/1210 (64.4%)
# Gaps: 179/1210 (14.8%)
# Score: 2239.5
#
#
#=======================================
BSNT_00472___ 1 ATGGAGCATTTGCC---GCAGCAGTATCG-TCATTTATTCCCAACCTTGC 46
|.|| |||.||| |..|||.||.|| || ||||||.||..|..|.|
RBAM_002970__ 1 -TTGA--ATTCGCCTCTGGTGCAATACCGATC-TTTATTTCCGGCGCTCC 46
BSNT_00472___ 47 AGACGCATACGATGCTTGCCAGCTGTTCTCAGAGCGCATTGGCAGAGCCT 96
..||.|||||||||||.||||||||.|||||.|||||..|.||...|||.
RBAM_002970__ 47 GCACACATACGATGCTCGCCAGCTGCTCTCAAAGCGCTCTTGCCCTGCCG 96
BSNT_00472___ 97 GTATCAAGGGCGATCCAGGATTATCATGATAGCCTGCTGTATAAAGGGAC 146
||.||||..|||.||.|.||.|||||.||.||||||||..|..|.|| |
RBAM_002970__ 97 GTTTCAAAAGCGGTCAATGACTATCAGGAAAGCCTGCTTCAGCATGG--C 144
BSNT_00472___ 147 G--AACTGGAAAGAAGCGATTGAAAAAACAGAGTTTGCGAGAAA----CG 190
| ||||||.|||||||.||||.|..|||.|| |||.|.|| .|
RBAM_002970__ 145 GGAAACTGGGAAGAAGCCATTGGACGAACGGA----GCGGGCAAGGTGTG 190
BSNT_00472___ 191 AGTTTGCAAAGCTGATCGGGGCTGAACCGGATGAAGTGGCGATTGTGCCG 240
|.|||||.||..|||||||.||..|.||.||.|||.|.||..||.|.||.
RBAM_002970__ 191 AATTTGCGAAATTGATCGGCGCCCATCCTGAAGAAATCGCCGTTTTACCT 240
BSNT_00472___ 241 TCAGTTTCTGATGCACTGGTTTCTGTAGCATCGTCCTTAACTGCATTTG- 289
|||||..|.|.||| .||.|||| .||||.|| .|||| ||||
RBAM_002970__ 241 TCAGTAACGGCTGC---TGTCTCTG-----CCGTCGTT-TCTGC-TTTGC 280
BSNT_00472___ 290 ---------GAAAGAAGCACGTTGTATATACAGATATGGATTTTCCGGCG 330
|||||||.||.|..||.|||||.||..||||||||||||||
RBAM_002970__ 281 CGGATTGCCGAAAGAAACAGGCGGTGTATACGGAATTGGATTTTCCGGCG 330
BSNT_00472___ 331 GT-GCCTCATGTTTGGCAGGCAC--ACTCCGATTATACCG----TATCCG 373
.| ||| ||..|||.|.|||||| |||..||| | |.||.|
RBAM_002970__ 331 ATCGCC-CACATTTTGAAGGCACAGACTGAGAT------GGAGCTTTCAG 373
BSNT_00472___ 374 TCATTCCATCAATAGACGGCGTGCTGCCGCTTGAACAATATGAAACGCAT 423
||.|.||.||...||||||..||.|.|||.|.||.|..|||||.|||.|.
RBAM_002970__ 374 TCGTGCCGTCTGAAGACGGAATGATCCCGTTAGAGCGGTATGAGACGTAC 423
BSNT_00472___ 424 ATTTCGGATGAAACAGTAC-----TGACGTGTGTTCCTCACGT-TCATTA 467
||.|||| ||||| || |.||.|||||.||.||.|| ||| ||
RBAM_002970__ 424 ATATCGG----AACAG-ACGCTTTTCACCTGTGTGCCCCATGTGTCA-TA 467
BSNT_00472___ 468 T-CGTGACGGCTATGTTCAGGATATAAAAGCG-ATTGCCGAGAT-TTCTC 514
| ||| .|||.|.|||.|||||||| .||||| ||||||||||| |.|.|
RBAM_002970__ 468 TACGT-CCGGTTTTGTCCAGGATAT-GAAGCGCATTGCCGAGATATCCGC 515
BSNT_00472___ 515 AGAGAAAGGGCTC-TTTATTGTTTGTAGATGCTTATCAATCAGCCGGGCA 563
|.|| |||||.|| .||.|| |||||.||||||||||||||.||.|||||
RBAM_002970__ 516 AAAG-AAGGGATCGCTTCTT-TTTGTCGATGCTTATCAATCGGCGGGGCA 563
BSNT_00472___ 564 TATTCCCATTGATGTGAAGGAATGGGGCGAAGAAATGCTGGCAGCAGGCA 613
.||.||.||||||||.||.||.|||||.|..||.||||||||.||.||..
RBAM_002970__ 564 CATCCCGATTGATGTAAAAGACTGGGGAGTTGATATGCTGGCCGCGGGTG 613
BSNT_00472___ 614 CCCGGAAGTATTTGCTCGGCATACCGGGTGTGGCGTTTCTTTATGTGAGA 663
|..|.||||||.||||||||||||||||...|||||||||||||||.|||
RBAM_002970__ 614 CGAGAAAGTATATGCTCGGCATACCGGGAACGGCGTTTCTTTATGTCAGA 663
BSNT_00472___ 664 AAGGAGCTGGCTG-ACGCACTGAAGCCGAAAGCATCA--GCTTGGTTC-G 709
|||||.||.||.| ||| .||||||||||||| ||| |..|||||| |
RBAM_002970__ 664 AAGGAACTTGCCGAACG-GCTGAAGCCGAAAG--TCACCGGGTGGTTCGG 710
BSNT_00472___ 710 GCAG-AGAGAAC---------GGATTTGAGGGG----GCTTATGCGAAAG 745
|||| ||.|..| ||||||.|...| .|||||||| |
RBAM_002970__ 711 GCAGCAGCGGGCGTCGATGCTGGATTTAACCCGTTTTTCTTATGCG---G 757
BSNT_00472___ 746 ACGCGCGC----CGTTTTCAAACGGGCACCCCAGCTTTTATCAGCGTATA 791
||| |.|| ||.|||.|.||.||.|||||.||.|||||||||.||||
RBAM_002970__ 758 ACG-GAGCCAAACGCTTTGAGACCGGAACCCCGGCATTTATCAGCATATA 806
BSNT_00472___ 792 CGCAGCTGCA-GCGGCTTTATCGCTGCTGAATCATATTGGAGTTTCTCAT 840
.||.|| .|| |||||||||||.||..|.||..||...|| |.||.
RBAM_002970__ 807 TGCGGC-ACAGGCGGCTTTATCTCTAGTAAACGATGCCGG-----CACAG 850
BSNT_00472___ 841 AC--------TCGGGATCATGTGAAAACGATC------TGTGCCGATGCA 876
|| .|||| |.||.||||...|| |.|||..|||
RBAM_002970__ 851 ACCGCATTCACCGGG---AAGTAAAAAAACTCAGCACATTTGCGTATG-- 895
BSNT_00472___ 877 GTTCAATATGCCGCTGAAAAAGGCCTGCAGCTGGCGGCGGCACAAGGTGG 926
||||.||..||||||||||..||||.|| ||||.||..|
RBAM_002970__ 896 ----AATACGCTTCTGAAAAAGGGTTGCACCT--------CACAGGGCCG 933
BSNT_00472___ 927 GGGTCAG-----------CCAGGTATGGTTGCGATCCGGGATG----AGC 961
..|||.| ||.||.|||.||.|.||.||||||| |||
RBAM_002970__ 934 CCGTCTGCCGATGACAGACCCGGCATGATTTCCATACGGGATGAAAAAGC 983
BSNT_00472___ 962 GGGCATCGGAAACGGCGGCGTTGCTGAAGAAGAAAAAAGTGATTTGCGCG 1011
|| ||||||||||.|||.||.|||.|..||||||..|..|.|||||.
RBAM_002970__ 984 GG----CGGAAACGGCTGCGCTGTTGAGGCGGAAAAACATCGTATGCGCA 1029
BSNT_00472___ 1012 CC--GCGGGACAATGTGATCCGTCTCGCTCCCCATTTTTATAATACGAAG 1059
|| || |||||| .|.|||||.||.||.||.|||||.|||||.|||...
RBAM_002970__ 1030 CCCAGC-GGACAA-ATCATCCGGCTGGCGCCTCATTTCTATAACACGGCC 1077
BSNT_00472___ 1060 GAGGACATGCGGCGCGCGATTGATGAGATCGCGGCGAAAACG------AT 1103
||.||..||..|...|||||||||||..| |||..||.|| ||
RBAM_002970__ 1078 GATGATCTGATGTATGCGATTGATGAACT---GGCTGAAGCGCGCGGTAT 1124
BSNT_00472___ 1104 CCACAAGTAA 1113
|.||
RBAM_002970__ 1125 --ATAA---- 1128
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