Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00472 and RBAM_002970

See Amino acid alignment / Visit BSNT_00472 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:13
# Commandline: needle
#    -asequence dna-align/BSNT_00472___ycbU.1.9828.seq
#    -bsequence dna-align/RBAM_002970___ycbU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00472___ycbU-RBAM_002970___ycbU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00472___ycbU-RBAM_002970___ycbU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00472___ycbU
# 2: RBAM_002970___ycbU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1210
# Identity:     779/1210 (64.4%)
# Similarity:   779/1210 (64.4%)
# Gaps:         179/1210 (14.8%)
# Score: 2239.5
# 
#
#=======================================

BSNT_00472___      1 ATGGAGCATTTGCC---GCAGCAGTATCG-TCATTTATTCCCAACCTTGC     46
                      |.||  |||.|||   |..|||.||.|| || ||||||.||..|..|.|
RBAM_002970__      1 -TTGA--ATTCGCCTCTGGTGCAATACCGATC-TTTATTTCCGGCGCTCC     46

BSNT_00472___     47 AGACGCATACGATGCTTGCCAGCTGTTCTCAGAGCGCATTGGCAGAGCCT     96
                     ..||.|||||||||||.||||||||.|||||.|||||..|.||...|||.
RBAM_002970__     47 GCACACATACGATGCTCGCCAGCTGCTCTCAAAGCGCTCTTGCCCTGCCG     96

BSNT_00472___     97 GTATCAAGGGCGATCCAGGATTATCATGATAGCCTGCTGTATAAAGGGAC    146
                     ||.||||..|||.||.|.||.|||||.||.||||||||..|..|.||  |
RBAM_002970__     97 GTTTCAAAAGCGGTCAATGACTATCAGGAAAGCCTGCTTCAGCATGG--C    144

BSNT_00472___    147 G--AACTGGAAAGAAGCGATTGAAAAAACAGAGTTTGCGAGAAA----CG    190
                     |  ||||||.|||||||.||||.|..|||.||    |||.|.||    .|
RBAM_002970__    145 GGAAACTGGGAAGAAGCCATTGGACGAACGGA----GCGGGCAAGGTGTG    190

BSNT_00472___    191 AGTTTGCAAAGCTGATCGGGGCTGAACCGGATGAAGTGGCGATTGTGCCG    240
                     |.|||||.||..|||||||.||..|.||.||.|||.|.||..||.|.||.
RBAM_002970__    191 AATTTGCGAAATTGATCGGCGCCCATCCTGAAGAAATCGCCGTTTTACCT    240

BSNT_00472___    241 TCAGTTTCTGATGCACTGGTTTCTGTAGCATCGTCCTTAACTGCATTTG-    289
                     |||||..|.|.|||   .||.||||     .||||.|| .|||| |||| 
RBAM_002970__    241 TCAGTAACGGCTGC---TGTCTCTG-----CCGTCGTT-TCTGC-TTTGC    280

BSNT_00472___    290 ---------GAAAGAAGCACGTTGTATATACAGATATGGATTTTCCGGCG    330
                              |||||||.||.|..||.|||||.||..||||||||||||||
RBAM_002970__    281 CGGATTGCCGAAAGAAACAGGCGGTGTATACGGAATTGGATTTTCCGGCG    330

BSNT_00472___    331 GT-GCCTCATGTTTGGCAGGCAC--ACTCCGATTATACCG----TATCCG    373
                     .| ||| ||..|||.|.||||||  |||..|||      |    |.||.|
RBAM_002970__    331 ATCGCC-CACATTTTGAAGGCACAGACTGAGAT------GGAGCTTTCAG    373

BSNT_00472___    374 TCATTCCATCAATAGACGGCGTGCTGCCGCTTGAACAATATGAAACGCAT    423
                     ||.|.||.||...||||||..||.|.|||.|.||.|..|||||.|||.|.
RBAM_002970__    374 TCGTGCCGTCTGAAGACGGAATGATCCCGTTAGAGCGGTATGAGACGTAC    423

BSNT_00472___    424 ATTTCGGATGAAACAGTAC-----TGACGTGTGTTCCTCACGT-TCATTA    467
                     ||.||||    ||||| ||     |.||.|||||.||.||.|| ||| ||
RBAM_002970__    424 ATATCGG----AACAG-ACGCTTTTCACCTGTGTGCCCCATGTGTCA-TA    467

BSNT_00472___    468 T-CGTGACGGCTATGTTCAGGATATAAAAGCG-ATTGCCGAGAT-TTCTC    514
                     | ||| .|||.|.|||.|||||||| .||||| ||||||||||| |.|.|
RBAM_002970__    468 TACGT-CCGGTTTTGTCCAGGATAT-GAAGCGCATTGCCGAGATATCCGC    515

BSNT_00472___    515 AGAGAAAGGGCTC-TTTATTGTTTGTAGATGCTTATCAATCAGCCGGGCA    563
                     |.|| |||||.|| .||.|| |||||.||||||||||||||.||.|||||
RBAM_002970__    516 AAAG-AAGGGATCGCTTCTT-TTTGTCGATGCTTATCAATCGGCGGGGCA    563

BSNT_00472___    564 TATTCCCATTGATGTGAAGGAATGGGGCGAAGAAATGCTGGCAGCAGGCA    613
                     .||.||.||||||||.||.||.|||||.|..||.||||||||.||.||..
RBAM_002970__    564 CATCCCGATTGATGTAAAAGACTGGGGAGTTGATATGCTGGCCGCGGGTG    613

BSNT_00472___    614 CCCGGAAGTATTTGCTCGGCATACCGGGTGTGGCGTTTCTTTATGTGAGA    663
                     |..|.||||||.||||||||||||||||...|||||||||||||||.|||
RBAM_002970__    614 CGAGAAAGTATATGCTCGGCATACCGGGAACGGCGTTTCTTTATGTCAGA    663

BSNT_00472___    664 AAGGAGCTGGCTG-ACGCACTGAAGCCGAAAGCATCA--GCTTGGTTC-G    709
                     |||||.||.||.| ||| .|||||||||||||  |||  |..|||||| |
RBAM_002970__    664 AAGGAACTTGCCGAACG-GCTGAAGCCGAAAG--TCACCGGGTGGTTCGG    710

BSNT_00472___    710 GCAG-AGAGAAC---------GGATTTGAGGGG----GCTTATGCGAAAG    745
                     |||| ||.|..|         ||||||.|...|    .||||||||   |
RBAM_002970__    711 GCAGCAGCGGGCGTCGATGCTGGATTTAACCCGTTTTTCTTATGCG---G    757

BSNT_00472___    746 ACGCGCGC----CGTTTTCAAACGGGCACCCCAGCTTTTATCAGCGTATA    791
                     ||| |.||    ||.|||.|.||.||.|||||.||.|||||||||.||||
RBAM_002970__    758 ACG-GAGCCAAACGCTTTGAGACCGGAACCCCGGCATTTATCAGCATATA    806

BSNT_00472___    792 CGCAGCTGCA-GCGGCTTTATCGCTGCTGAATCATATTGGAGTTTCTCAT    840
                     .||.|| .|| |||||||||||.||..|.||..||...||     |.||.
RBAM_002970__    807 TGCGGC-ACAGGCGGCTTTATCTCTAGTAAACGATGCCGG-----CACAG    850

BSNT_00472___    841 AC--------TCGGGATCATGTGAAAACGATC------TGTGCCGATGCA    876
                     ||        .||||   |.||.||||...||      |.|||..|||  
RBAM_002970__    851 ACCGCATTCACCGGG---AAGTAAAAAAACTCAGCACATTTGCGTATG--    895

BSNT_00472___    877 GTTCAATATGCCGCTGAAAAAGGCCTGCAGCTGGCGGCGGCACAAGGTGG    926
                         ||||.||..||||||||||..||||.||        ||||.||..|
RBAM_002970__    896 ----AATACGCTTCTGAAAAAGGGTTGCACCT--------CACAGGGCCG    933

BSNT_00472___    927 GGGTCAG-----------CCAGGTATGGTTGCGATCCGGGATG----AGC    961
                     ..|||.|           ||.||.|||.||.|.||.|||||||    |||
RBAM_002970__    934 CCGTCTGCCGATGACAGACCCGGCATGATTTCCATACGGGATGAAAAAGC    983

BSNT_00472___    962 GGGCATCGGAAACGGCGGCGTTGCTGAAGAAGAAAAAAGTGATTTGCGCG   1011
                     ||    ||||||||||.|||.||.|||.|..||||||..|..|.|||||.
RBAM_002970__    984 GG----CGGAAACGGCTGCGCTGTTGAGGCGGAAAAACATCGTATGCGCA   1029

BSNT_00472___   1012 CC--GCGGGACAATGTGATCCGTCTCGCTCCCCATTTTTATAATACGAAG   1059
                     ||  || |||||| .|.|||||.||.||.||.|||||.|||||.|||...
RBAM_002970__   1030 CCCAGC-GGACAA-ATCATCCGGCTGGCGCCTCATTTCTATAACACGGCC   1077

BSNT_00472___   1060 GAGGACATGCGGCGCGCGATTGATGAGATCGCGGCGAAAACG------AT   1103
                     ||.||..||..|...|||||||||||..|   |||..||.||      ||
RBAM_002970__   1078 GATGATCTGATGTATGCGATTGATGAACT---GGCTGAAGCGCGCGGTAT   1124

BSNT_00472___   1104 CCACAAGTAA   1113
                       |.||    
RBAM_002970__   1125 --ATAA----   1128


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.