Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00470 and RBAM_002960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_00470___pcp.1.9828.seq
# -bsequence dna-align/RBAM_002960___pcp.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00470___pcp-RBAM_002960___pcp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00470___pcp-RBAM_002960___pcp.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00470___pcp
# 2: RBAM_002960___pcp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 685
# Identity: 475/685 (69.3%)
# Similarity: 475/685 (69.3%)
# Gaps: 74/685 (10.8%)
# Score: 1518.5
#
#
#=======================================
BSNT_00470___ 1 AT-GAGAAAAAA--AGTGCTGATCACTGGCTTTGACCCTTTTGACAAAGA 47
|| ||||||||| |.||||| ||.|||||||||||.||.|.|...||
RBAM_002960__ 1 ATGGAGAAAAAAGTATTGCTG---ACAGGCTTTGACCCCTTCGGCGGGGA 47
BSNT_00470___ 48 AACCGTCAATCCATCATGGGAAGCGGCGAAACGGCTTAATGGCTTCGAGA 97
|||.||||||||.|||||||||||||..||||||||.|||||...||
RBAM_002960__ 48 AACGGTCAATCCTTCATGGGAAGCGGTCAAACGGCTGAATGGTGCCG--- 94
BSNT_00470___ 98 CGGAAGAAGCCAT-----AATTACAGCGGAACAAATTCCTACTGTCTTT- 141
|.||.| |||.| .||...|.|.||||||.|.||.||.||.|||
RBAM_002960__ 95 CTGAGG--GCCCTGCCTCTATCGTATCTGAACAAGTGCCGACCGTTTTTT 142
BSNT_00470___ 142 ---AGATCCGCTCTGGACACTCTGCGCCAAGCCATTCAAAAA-CATCAGC 187
|| .||||.|.|...||||||.|.||.| ||||||| |||||||
RBAM_002960__ 143 ATAAG----TCTCTTGCCGTACTGCGCGAGGCGA-TCAAAAAGCATCAGC 187
BSNT_00470___ 188 CGGATATCGTAATTTGTGTCGGCCAAGCAGGAGGACGGATGCAGATTACA 237
|.||.||..|.||.||||||||.||.|||||.||..|.||||||||.||.
RBAM_002960__ 188 CTGACATTATCATCTGTGTCGGACAGGCAGGCGGCAGAATGCAGATCACG 237
BSNT_00470___ 238 CCGGAACGAGTGGCGATCAACCTTGCA--GATGCGCGAATCCCCGATAAC 285
||||||||.||.||||||||.|| || ||.|||||.||.||.||||||
RBAM_002960__ 238 CCGGAACGGGTCGCGATCAATCT--CAATGAGGCGCGCATACCGGATAAC 285
BSNT_00470___ 286 GAAGGACATCAGCCGATTGATGAAGAAATTTCTCCAGATGGGCCCGCCGC 335
||||||.|.|||||..|.|..|||.|.|||||||.||..||.|||||.||
RBAM_002960__ 286 GAAGGAAACCAGCCTGTCGGGGAAAACATTTCTCAAGGCGGTCCCGCGGC 335
BSNT_00470___ 336 TTACTGGACAGGGCTTCCCGTGAAACGAAT-------GACTGCTAAGATG 378
.||.|||||.||.|||||..|.|||||.|| ||...|.||
RBAM_002960__ 336 CTATTGGACCGGCCTTCCGATCAAACGGATCGTTGAGGAAATCAAA---- 381
BSNT_00470___ 379 AAGGAACACGGCATTCCAGCTGCGGTTTCCTACACAGCGGGAACCTTTGT 428
|||||| ||||||||.||.||.||.||||||||.|||||.||.|||||
RBAM_002960__ 382 AAGGAA---GGCATTCCCGCGGCTGTATCCTACACGGCGGGGACGTTTGT 428
BSNT_00470___ 429 ATGCAA----CTATTTGTTCTACGGGTTAATGGATTACATTAGCCGGACA 474
|||||| ||.||| |||||..|.||||||.|.||.| ||.|.||
RBAM_002960__ 429 ATGCAATCACCTCTTT----TACGGCCTGATGGATGAAATCA-CCCGCCA 473
BSNT_00470___ 475 TC-CCCGCACATTCGCGGCGGTTTTATTCATATTCCTTACATTCCGCAGC 523
|| .||||||||.||||||||.|||||.||.||.||.|||||||||.|||
RBAM_002960__ 474 TCATCCGCACATCCGCGGCGGGTTTATACACATCCCGTACATTCCGGAGC 523
BSNT_00470___ 524 AAACAATCGACAAAA--CAGCGCCGAGCCTCAGTCTGGA-CACGATTGTC 570
||||..| .||||| |.||||||||||||||.||||| |.|| ||.|
RBAM_002960__ 524 AAACCTT--GCAAAAGTCTGCGCCGAGCCTCAGCCTGGATCTCG--TGAC 569
BSNT_00470___ 571 ---CGGGCATTGAGAATCGCCGCTGTTACGGCCGCACAATATGATGAGGA 617
.|.|| |.|.|||||||||.||.||.|||||.....||||.||.||
RBAM_002960__ 570 AAAAGCGC--TCAAAATCGCCGCGGTGACCGCCGCGGCGCATGAGGACGA 617
BSNT_00470___ 618 TGTGAAGTCACCG--GGCGGTACG--CTGCACTAA 648
|.|..|| |||| ||.|| || ||.||||||
RBAM_002960__ 618 TATTGAG--ACCGGCGGAGG--CGAACTTCACTAA 648
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