Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00469 and RBAM_002950

See Amino acid alignment / Visit BSNT_00469 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:13
# Commandline: needle
#    -asequence dna-align/BSNT_00469___tatCD.1.9828.seq
#    -bsequence dna-align/RBAM_002950___tatCD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00469___tatCD-RBAM_002950___tatCD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00469___tatCD-RBAM_002950___tatCD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00469___tatCD
# 2: RBAM_002950___tatCD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 766
# Identity:     533/766 (69.6%)
# Similarity:   533/766 (69.6%)
# Gaps:          77/766 (10.1%)
# Score: 1812.5
# 
#
#=======================================

BSNT_00469___      1 ATGGATAAAAAAGAAACCCATCTGATCGGGCATTTAGAAGAGCTTCGCC-     49
                     .|||||||||||||||||||..||||||||||||||||.||..||||.| 
RBAM_002950__      1 TTGGATAAAAAAGAAACCCACTTGATCGGGCATTTAGAGGAAGTTCGGCA     50

BSNT_00469___     50 -------------GCCGGATTATCGTCACCCTCGCGGCATTTTTTCTATT     86
                                  .|||  ||||||.|...||||.|   ||||||     
RBAM_002950__     51 GCGTCTCATTAAAACCG--TTATCGCCTTTCTCGTG---TTTTTT-----     90

BSNT_00469___     87 TCTCATCACGGCTTTTTTGTTCGTACAGGACATTTATGACTGGCTGATCA    136
                         |||...||.|..|.|||.||.|||||.|||||||||||||||||||
RBAM_002950__     91 ----ATCGGCGCCTGCTGGTTTGTGCAGGATATTTATGACTGGCTGATCA    136

BSNT_00469___    137 GGGATTTGGATGGAAAGCTGGCTGTGCTTGGGCCGAGTGAAATCCTCTGG    186
                     .||||||||||||.|.||||||.||..|.||||||||.||.||..|.|||
RBAM_002950__    137 AGGATTTGGATGGCAGGCTGGCCGTTTTAGGGCCGAGCGAGATTTTATGG    186

BSNT_00469___    187 GTGTATATGATGCTTTCCGGCATTTGTGCCATTGCGGCTTCTATCCCTGT    236
                     ||||||||||||.||.|.||.||.||.|||.||.||||..|.||.||.||
RBAM_002950__    187 GTGTATATGATGATTGCGGGAATATGCGCCCTTACGGCAACGATTCCGGT    236

BSNT_00469___    237 TGCCGCGTACCAGCTGTGGCGTTT--CGTTGCACCGGCACTGAC------    278
                     ||||||.|..|||||.||||||||  ||  ||.|||||..||||      
RBAM_002950__    237 TGCCGCTTTTCAGCTCTGGCGTTTTACG--GCGCCGGCTTTGACCCCGTT    284

BSNT_00469___    279 -GAAAACGGAGCGCAAGGTGACGCT---CATGTACATACCAGG--TTTAT    322
                      |  ||||..||||       ||||   | |.|||||.||.||  |||  
RBAM_002950__    285 TG--AACGCCGCGC-------CGCTTTGC-TTTACATTCCGGGGCTTT--    322

BSNT_00469___    323 TTGCG---TTGTTT-TTGGCGGGCATCTCCTTCGGATACTTTGTCTTGTT    368
                        ||   |||||| ||..| ||.||.||||||||.||.|||||..||||
RBAM_002950__    323 ---CGGTTTTGTTTATTATC-GGAATTTCCTTCGGGTATTTTGTGCTGTT    368

BSNT_00469___    369 TCCGATCGTGCTCAGCTTTTTGACTCATTTATCCTCCGGCCACTTTGAAA    418
                     ||||||.||||||.|.|||||.||.||.||||||.|||||||.|||||.|
RBAM_002950__    369 TCCGATTGTGCTCGGATTTTTAACACAATTATCCGCCGGCCAGTTTGACA    418

BSNT_00469___    419 CGATGTTTACGGCTGACCGCTACTTTAGGTTTATGGTGAATTTGAGCCTG    468
                     .|.|.||||||||.|||...||.||||..||||||.|||||.|.|...||
RBAM_002950__    419 TGGTATTTACGGCGGACAAGTATTTTACCTTTATGCTGAATCTTACATTG    468

BSNT_00469___    469 CCGTTCGGCTTCTTGTTTGAGATGCCCTTGGTGGTGATGTTTTTAACAAG    518
                     ||||||||.||.||||||||.|||||..|||..||.||||||.|.|||.|
RBAM_002950__    469 CCGTTCGGATTTTTGTTTGAAATGCCTCTGGCCGTCATGTTTCTGACACG    518

BSNT_00469___    519 GCTGGGCATCTTAAATCCTTACAGACTGGCCAAAGCGAGAAAGCTGTCCT    568
                     |.|.||.|||.|.|||||...|.|.|||||.||.|||.|.|||||.||.|
RBAM_002950__    519 GATCGGAATCGTGAATCCAACCCGGCTGGCAAAGGCGCGGAAGCTTTCGT    568

BSNT_00469___    569 ATTTTCTGCTGATTGTCGTGTCCATATTGATTACACCGCCTGATTTTATT    618
                     |||||.|||||||.|||||.||..|..|||||||.||.||.||||||||.
RBAM_002950__    569 ATTTTGTGCTGATCGTCGTCTCGGTGCTGATTACGCCTCCGGATTTTATG    618

BSNT_00469___    619 TCTGATTTTCTCGTGATGATCCCGCTTCTTGTCCTGTTTGAAGTGAGTGT    668
                     |||||.||||||||.|||||.|||||.||.|||||.|.||||.|.|||||
RBAM_002950__    619 TCTGACTTTCTCGTCATGATTCCGCTGCTCGTCCTCTATGAAATCAGTGT    668

BSNT_00469___    669 CACCCTATCGGCG-TTTGTCTAC----AAAAAGAGGCTGAGGGAAGAAAC    713
                     .||.||.|| .|| .|.||.|||    |.|||..|||.||||       |
RBAM_002950__    669 GACGCTGTC-CCGCATCGTTTACCGGAAGAAATGGGCCGAGG-------C    710

BSNT_00469___    714 AGCGGCGGCCGCTTAG    729
                     ..||.|.||.||||||
RBAM_002950__    711 GCCGTCTGCAGCTTAG    726


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00469 and RBAM_002950

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
