Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00945 and RBAM_002880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:38
# Commandline: needle
# -asequence dna-align/BSNT_00945___ydfO.1.9828.seq
# -bsequence dna-align/RBAM_002880___ydfO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00945___ydfO-RBAM_002880___ydfO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00945___ydfO-RBAM_002880___ydfO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00945___ydfO
# 2: RBAM_002880___ydfO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 939
# Identity: 835/939 (88.9%)
# Similarity: 835/939 (88.9%)
# Gaps: 0/939 ( 0.0%)
# Score: 3759.0
#
#
#=======================================
BSNT_00945___ 1 ATGGCGAAAAAAACGATGGGAATTCATCATATTACAGCGATTGTCGGTCA 50
||||||||||||||||||||.||.||||||||||||||.|||||||||||
RBAM_002880__ 1 ATGGCGAAAAAAACGATGGGCATCCATCATATTACAGCAATTGTCGGTCA 50
BSNT_00945___ 51 CCCTCAAGAGAACACAGATTTCTACGCAGGAGTGCTTGGGCTTCGTTTGG 100
||||||||||||..|.|||||||||||.||||||||.|||||.||.||||
RBAM_002880__ 51 CCCTCAAGAGAATGCTGATTTCTACGCTGGAGTGCTGGGGCTGCGATTGG 100
BSNT_00945___ 101 TCAAGCAAACTGTCAATTTTGATGACCCAGGTACGTATCATCTTTATTTT 150
||||||||||.||||||||||||||.||.|||||||||||.|||||||||
RBAM_002880__ 101 TCAAGCAAACGGTCAATTTTGATGATCCGGGTACGTATCACCTTTATTTT 150
BSNT_00945___ 151 GGGAATGAAGGCGGGAAGCCGGGAACAATCATTACCTTCTTTCCGTGGGC 200
|||.||||||||||||||||||||||||||||.||.||||||||||||||
RBAM_002880__ 151 GGGGATGAAGGCGGGAAGCCGGGAACAATCATCACATTCTTTCCGTGGGC 200
BSNT_00945___ 201 CGGAGCCCGCCAAGGCGTCATTGGAGACGGTCAAGTTGGCGTGACTTCGT 250
.||.||||||||||||.|||||||||||||.||.|||||||||||.||.|
RBAM_002880__ 201 GGGCGCCCGCCAAGGCATCATTGGAGACGGACAGGTTGGCGTGACATCTT 250
BSNT_00945___ 251 ATGTCGTGCCGAAAGGGGCTATGGCATTTTGGGAAAAGAGACTAGAAAAG 300
|.|.|||||||||.||.||.|||||.|||||||||||||||||.||||||
RBAM_002880__ 251 ACGCCGTGCCGAAGGGTGCCATGGCGTTTTGGGAAAAGAGACTTGAAAAG 300
BSNT_00945___ 301 TTCAACGTTCCCTACACCAAAATCGAGCGCTTTGGGGAACAATATGTAGA 350
||||||.||||.|||||.|||||||||||.|||||.|||||||||.||||
RBAM_002880__ 301 TTCAACATTCCATACACAAAAATCGAGCGTTTTGGAGAACAATATATAGA 350
BSNT_00945___ 351 ATTTGATGATCCTCATGGACTGCACTTAGAAATCGTGGAAAGAGAAGAAG 400
|||||||||.||.|||||.|||||.||||||||||||||||||||||.||
RBAM_002880__ 351 ATTTGATGACCCGCATGGCCTGCATTTAGAAATCGTGGAAAGAGAAGCAG 400
BSNT_00945___ 401 GAGAGGCTAATACGTGGACTTTCGGAGATGTAACGCCCGATGTTGCCATT 450
|.|||||.||||||||||||||||||||||||||.||.||||||||||||
RBAM_002880__ 401 GGGAGGCCAATACGTGGACTTTCGGAGATGTAACCCCGGATGTTGCCATT 450
BSNT_00945___ 451 AAAGGTTTTGGGGGTGCAACCCTATTATCAGCGCAGCCTGACAAAACCGC 500
|||||.|||||.|||||.|||||.||||||||.||||||||.|||||.|.
RBAM_002880__ 451 AAAGGCTTTGGCGGTGCGACCCTGTTATCAGCACAGCCTGAAAAAACAGG 500
BSNT_00945___ 501 TGAGCTTTTAGAAAACATCATGGGGCTGGAACGAGTCGGCAAAGAAGGAG 550
|.|.||..|.|||||||||||||||||.||.||||||||.||||||||||
RBAM_002880__ 501 TAAACTGCTGGAAAACATCATGGGGCTTGAGCGAGTCGGTAAAGAAGGAG 550
BSNT_00945___ 551 ACTTCGTTCGTTATCGTTCCGCCGGTGATATCGGAAATGTGATTGACCTT 600
|||||||||||||||||||.||||||||||||||||||||||||||||||
RBAM_002880__ 551 ACTTCGTTCGTTATCGTTCTGCCGGTGATATCGGAAATGTGATTGACCTT 600
BSNT_00945___ 601 AAGTTAACGCCTATTGGCCGCGGGCAAATGGGGGCCGGAACGGTGCATCA 650
||||||||||||||.|||||||||||||||||.|.|||.|||||.|||||
RBAM_002880__ 601 AAGTTAACGCCTATCGGCCGCGGGCAAATGGGTGTCGGCACGGTCCATCA 650
BSNT_00945___ 651 CATCGCTTGGCGGGCTAACGATGATGAAGATCAGTTAGATTGGCAAAGAT 700
||||||||||||||||.|.|||||.||||||||.||||||||||||||.|
RBAM_002880__ 651 CATCGCTTGGCGGGCTCAGGATGACGAAGATCAATTAGATTGGCAAAGGT 700
BSNT_00945___ 701 ATATTGCTTCCCATGGATATGGTGTAACTCCTGTTCGGGATAGAAACTAC 750
..||||||.|.||.|||||||||||.||||||||||.||||||||||||.
RBAM_002880__ 701 TCATTGCTGCGCACGGATATGGTGTGACTCCTGTTCAGGATAGAAACTAT 750
BSNT_00945___ 751 TTTAATGCCATTTACTTCAGGGAACATGGGGAAATCCTGTTTGAAATCGC 800
||||||||..||||||||||.|||||||||||||||.|.|||||.|||||
RBAM_002880__ 751 TTTAATGCGGTTTACTTCAGAGAACATGGGGAAATCTTATTTGAGATCGC 800
BSNT_00945___ 801 AACTGATCCCCCTGGCTTTGCACATGATGAAACACAGGATACAATGGGCG 850
|||||||||.||.||||||||.||||||||..||||.||.||||||||||
RBAM_002880__ 801 AACTGATCCGCCGGGCTTTGCCCATGATGAGTCACAAGAAACAATGGGCG 850
BSNT_00945___ 851 AAAAACTGATGCTGCCTGTACAATATGAACCGCATCGCACACAAATTGAA 900
.||||||||||||.||||..||.|||||||||||.||..|||||||||||
RBAM_002880__ 851 GAAAACTGATGCTCCCTGAGCAGTATGAACCGCACCGGGCACAAATTGAA 900
BSNT_00945___ 901 CAAGGGCTGCTGCCGTTTGAAGTAAGAGAGTTAGATTGA 939
|||||||||||||||||||||||.|||||.|||||||||
RBAM_002880__ 901 CAAGGGCTGCTGCCGTTTGAAGTGAGAGAATTAGATTGA 939
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