Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00432 and RBAM_002810
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_00432.1.9828.seq
# -bsequence dna-align/RBAM_002810___ycbA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00432-RBAM_002810___ycbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00432-RBAM_002810___ycbA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00432
# 2: RBAM_002810___ycbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1406
# Identity: 894/1406 (63.6%)
# Similarity: 894/1406 (63.6%)
# Gaps: 217/1406 (15.4%)
# Score: 2913.0
#
#
#=======================================
BSNT_00432 1 ATGTTCTGGGTCAAAAGCAATTTGCAGGTTTTCTCCCGATTCCCCAAAAT 50
RBAM_002810__ 0 -------------------------------------------------- 0
BSNT_00432 51 AAAAAGCGAGGATGTGATCAACATAAAACTGGAACGGTTTATTGAAAAAG 100
RBAM_002810__ 0 -------------------------------------------------- 0
BSNT_00432 101 ACGGATATATATTGGCCCTGATGCTGATTACGGTGCCGCTGGCCGGTGAA 150
||||||||.||.|||||||||||.||.|||
RBAM_002810__ 1 --------------------ATGCTGATCACCGTGCCGCTGGCGGGGGAA 30
BSNT_00432 151 CTGAAATTTTATCCCCTCAATGAAGAATTCCGGGTCAGCTTTGGGGCACC 200
|||||||||||.|||||.|||||.|.||..|||.|||||||.||.||.||
RBAM_002810__ 31 CTGAAATTTTACCCCCTGAATGAGGTATATCGGATCAGCTTCGGCGCCCC 80
BSNT_00432 201 GGTTTTTTTCTTCTTTTTATCAT--TGTTGCGGCATGTGCCCGCTGTGCT 248
||.|||||||| |||||.|..| ||.|.|||||||||||.||.||..|
RBAM_002810__ 81 GGCTTTTTTCT--TTTTTCTGCTGCTGCTTCGGCATGTGCCGGCAGTATT 128
BSNT_00432 249 G-CCGGGTTTTCTGACTGGAGCGGCTGTTTT--CATCTTTCGCGTCTTTC 295
| |.|||.|.| ||||.||.||.||.|||.| || ||.||..||...|
RBAM_002810__ 129 GTCAGGGCTGT-TGACAGGTGCAGCCGTTGTGGCA--TTCCGGATCGGCC 175
BSNT_00432 296 TGGAATTATGGGGCGGAGGACACAATGGACTGACT---CCGATTCTGTAT 342
||||.|..||| ||||||.|..||| |.|.|| |.||..||.|.|
RBAM_002810__ 176 TGGAGTGCTGG---GGAGGAGAGCATG--CCGGCTTTACGGAGGCTTTTT 220
BSNT_00432 343 GATCAAGC----------GTCTGGCTTTTTCTTTTATATGACTTACGCCT 382
|| ||| || ||.||.|||||..|.||.||.||||
RBAM_002810__ 221 --TC-AGCCAATATCCCAGT-----TTCTTTTTTTACTTTACATATGCCT 262
BSNT_00432 383 GTCTGTTTTCCATAT--TAAAGGCCAATCGTTTCCGTGAACGGCCGATTA 430
|..|||||| ||.| |.||||.||..|.|||..|.||.||||||.|.|
RBAM_002810__ 263 GCTTGTTTT--ATGTGCTGAAGGTCAGGCTTTTTTGGGATCGGCCGCTGA 310
BSNT_00432 431 TGCTC-GGTTTCATTGGGTTTATGATTGAAGTTGTGTCAGATTGTGTCGA 479
||.|| |||||| |.||.|||.|.||||||.|||.|||.|||...||.||
RBAM_002810__ 311 TGATCGGGTTTC-TCGGTTTTCTCATTGAAATTGCGTCCGATGCCGTTGA 359
BSNT_00432 480 GCTGGCTGTGCAATTTCTCATTTTTCATACGG--------TTGTCACGCC 521
..||.|.|| |||.|||||...||| ||.|.|.|||
RBAM_002810__ 360 AATGACGGT--------TCAGTTTTCCGGCGGCCGGCAGATTATGATGCC 401
BSNT_00432 522 TGAGAAAATCACTGACATTGCGGTGATTGCGATTTCTCACACATTTATTG 571
.||.||..|..|.||.||||||||.||.||..||||||||||||||||||
RBAM_002810__ 402 GGACAAGCTGGCGGATATTGCGGTTATCGCTGTTTCTCACACATTTATTG 451
BSNT_00432 572 TGATGAGCTTTTATAGTGTGCTGAAGCTGTATGAAACACA-ATCGAGAGA 620
||.||||.||||..|..|||.||||||||.|.|||.|.|| .|| ||.||
RBAM_002810__ 452 TGCTGAGTTTTTTCAACGTGATGAAGCTGCACGAATCTCAGGTC-AGGGA 500
BSNT_00432 621 AAAACAGACAAGGCAGCAGCACGAGCACATGCTGATGATCGTTTCCAATT 670
||||||.||.||..|||||||.|||||||||||||||||.||.||.||.|
RBAM_002810__ 501 AAAACAAACGAGAAAGCAGCATGAGCACATGCTGATGATTGTGTCTAACT 550
BSNT_00432 671 TATATGAAGAAACGGTGCACCTAAAAAAGACATTGAAAACGACAGAGAAA 720
||||||||||||||.|.||..|.|||||.||..||||||||||.|||.|.
RBAM_002810__ 551 TATATGAAGAAACGATTCATTTGAAAAAAACGCTGAAAACGACGGAGCAT 600
BSNT_00432 721 GTGACAAACGATTCGTATCAGTTCTATCGGGAAATGAAGGGCAAGGATGT 770
|||||.||.||.||.||||||.|.|||||||||||||..||.||.||
RBAM_002810__ 601 GTGACGAAAGAATCCTATCAGCTATATCGGGAAATGAGCGGGAACGA--- 647
BSNT_00432 771 TC----AGCTGAGCGGCAGAATCCTGAGACTGGCCGGAGAGATTCATGAA 816
| ||||..|..||.||||.|||.|.||.||.|||||.|||||||||
RBAM_002810__ 648 -CCGGGAGCTCGGTAGCCGAATGCTGCGCCTTGCGGGAGAAATTCATGAA 696
BSNT_00432 817 GTGAAAAAGGACAACCAGCGGATATTCGCAGGGCTTTCAAAACTGATTTC 866
||||||||.|||||.|||||.||||||||.||..|.||.||.||||||||
RBAM_002810__ 697 GTGAAAAAAGACAATCAGCGAATATTCGCCGGTTTGTCGAAGCTGATTTC 746
BSNT_00432 867 GAATGAGAGTTTGAGAGATTATATGAGGGCTTCTGATTTG--CTGCAGCT 914
.||||||||.||..|.|||||.||||..||..|.|.|.|| |.||| |
RBAM_002810__ 747 CAATGAGAGATTCCGGGATTACATGAATGCCGCCGCTCTGGTCGGCA--T 794
BSNT_00432 915 CGTGATTCGAATGAATGAAAAGTACGCTGAAGCACTAGGGAAGCAGATTG 964
|||.||.|||||.||||||||.|||||.|||.|..||||.|||.|.|||.
RBAM_002810__ 795 CGTCATCCGAATCAATGAAAAATACGCCGAATCTTTAGGCAAGGACATTC 844
BSNT_00432 965 ATTTTTACTGCTCGATCGAGGGAGAGCATGACGAATATCACGTATTTATC 1014
|.||.....||..|||.||.|||||.|||..|||.||||||||.||||.|
RBAM_002810__ 845 AATTCCGGAGCGTGATTGAAGGAGAACATCCCGATTATCACGTCTTTACC 894
BSNT_00432 1015 GTGCTTTCGATCATTAATAATCTAACAGCAAATGCGGTAGAGGCTATGGA 1064
||.||.||||||.|.|||||.||.||.||.|||||.||.||.||.||||.
RBAM_002810__ 895 GTCCTGTCGATCTTAAATAACCTGACCGCCAATGCCGTCGAAGCCATGGG 944
BSNT_00432 1065 TGA-AGAGG-GAATGGTCAGCCTGAGGCTCCGTA-AGCCAAATGAGAGTA 1111
.|| ||.|| || |.||.||||...|||.||.| .||..||.|||| .|
RBAM_002810__ 945 AGACAGGGGTGA--GATCCGCCTCGCGCTGCGCAGGGCGGAAGGAGA-AA 991
BSNT_00432 1112 TGGTAGAATTCCAGGTGGAAGACAATGGCCCCGGGATTTCCGAGAAAATC 1161
.||..|||||.||||.||||||..|.||.|||||.|||.|.||.||||||
RBAM_002810__ 992 AGGCTGAATTTCAGGCGGAAGATGACGGTCCCGGCATTCCGGAAAAAATC 1041
BSNT_00432 1162 GGAGACATTGTGTTTGA-CCCGGGCTTTACTTCAAAATATGACGAATTTG 1210
|||||..|.||.|.||| |||||| |||||.||.|||||.||.|||||.|
RBAM_002810__ 1042 GGAGAGGTCGTTTATGATCCCGGG-TTTACGTCCAAATACGATGAATTCG 1090
BSNT_00432 1211 GCACGCCTTCTACGGGTATCGGACTTTCCTACGTAAAGGAAATCGTGACT 1260
||||.|||||.|||||.|||||.|||.|.|||||.|||||||||||.|||
RBAM_002810__ 1091 GCACACCTTCAACGGGCATCGGGCTTACTTACGTGAAGGAAATCGTAACT 1140
BSNT_00432 1261 GAGCTAGAAGGGGATATCACGTTTGATAATCAGC----AGCGGGGAGTGG 1306
||.||.||.||.||.||..|.|||.||||..||| | ||.||..
RBAM_002810__ 1141 GAACTTGACGGAGACATTTCCTTTCATAACAAGCCAAAA----GGCGTCA 1186
BSNT_00432 1307 TGTTTGCCATCAGGCTGCCTGTCCGGCATTTGATT-CAGAAAGGGTGA-- 1353
|.|||.|.||.|..|||||.||...|||||||||| ||||||||.|||
RBAM_002810__ 1187 TATTTACGATTAAACTGCCGGTGAAGCATTTGATTGCAGAAAGGATGAAC 1236
BSNT_00432 1353 ------ 1353
RBAM_002810__ 1237 TCATAA 1242
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