Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00432 and RBAM_002810

See Amino acid alignment / Visit BSNT_00432 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:12
# Commandline: needle
#    -asequence dna-align/BSNT_00432.1.9828.seq
#    -bsequence dna-align/RBAM_002810___ycbA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00432-RBAM_002810___ycbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00432-RBAM_002810___ycbA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00432
# 2: RBAM_002810___ycbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1406
# Identity:     894/1406 (63.6%)
# Similarity:   894/1406 (63.6%)
# Gaps:         217/1406 (15.4%)
# Score: 2913.0
# 
#
#=======================================

BSNT_00432         1 ATGTTCTGGGTCAAAAGCAATTTGCAGGTTTTCTCCCGATTCCCCAAAAT     50
                                                                       
RBAM_002810__      0 --------------------------------------------------      0

BSNT_00432        51 AAAAAGCGAGGATGTGATCAACATAAAACTGGAACGGTTTATTGAAAAAG    100
                                                                       
RBAM_002810__      0 --------------------------------------------------      0

BSNT_00432       101 ACGGATATATATTGGCCCTGATGCTGATTACGGTGCCGCTGGCCGGTGAA    150
                                         ||||||||.||.|||||||||||.||.|||
RBAM_002810__      1 --------------------ATGCTGATCACCGTGCCGCTGGCGGGGGAA     30

BSNT_00432       151 CTGAAATTTTATCCCCTCAATGAAGAATTCCGGGTCAGCTTTGGGGCACC    200
                     |||||||||||.|||||.|||||.|.||..|||.|||||||.||.||.||
RBAM_002810__     31 CTGAAATTTTACCCCCTGAATGAGGTATATCGGATCAGCTTCGGCGCCCC     80

BSNT_00432       201 GGTTTTTTTCTTCTTTTTATCAT--TGTTGCGGCATGTGCCCGCTGTGCT    248
                     ||.||||||||  |||||.|..|  ||.|.|||||||||||.||.||..|
RBAM_002810__     81 GGCTTTTTTCT--TTTTTCTGCTGCTGCTTCGGCATGTGCCGGCAGTATT    128

BSNT_00432       249 G-CCGGGTTTTCTGACTGGAGCGGCTGTTTT--CATCTTTCGCGTCTTTC    295
                     | |.|||.|.| ||||.||.||.||.|||.|  ||  ||.||..||...|
RBAM_002810__    129 GTCAGGGCTGT-TGACAGGTGCAGCCGTTGTGGCA--TTCCGGATCGGCC    175

BSNT_00432       296 TGGAATTATGGGGCGGAGGACACAATGGACTGACT---CCGATTCTGTAT    342
                     ||||.|..|||   ||||||.|..|||  |.|.||   |.||..||.|.|
RBAM_002810__    176 TGGAGTGCTGG---GGAGGAGAGCATG--CCGGCTTTACGGAGGCTTTTT    220

BSNT_00432       343 GATCAAGC----------GTCTGGCTTTTTCTTTTATATGACTTACGCCT    382
                       || |||          ||     ||.||.|||||..|.||.||.||||
RBAM_002810__    221 --TC-AGCCAATATCCCAGT-----TTCTTTTTTTACTTTACATATGCCT    262

BSNT_00432       383 GTCTGTTTTCCATAT--TAAAGGCCAATCGTTTCCGTGAACGGCCGATTA    430
                     |..||||||  ||.|  |.||||.||..|.|||..|.||.||||||.|.|
RBAM_002810__    263 GCTTGTTTT--ATGTGCTGAAGGTCAGGCTTTTTTGGGATCGGCCGCTGA    310

BSNT_00432       431 TGCTC-GGTTTCATTGGGTTTATGATTGAAGTTGTGTCAGATTGTGTCGA    479
                     ||.|| |||||| |.||.|||.|.||||||.|||.|||.|||...||.||
RBAM_002810__    311 TGATCGGGTTTC-TCGGTTTTCTCATTGAAATTGCGTCCGATGCCGTTGA    359

BSNT_00432       480 GCTGGCTGTGCAATTTCTCATTTTTCATACGG--------TTGTCACGCC    521
                     ..||.|.||        |||.|||||...|||        ||.|.|.|||
RBAM_002810__    360 AATGACGGT--------TCAGTTTTCCGGCGGCCGGCAGATTATGATGCC    401

BSNT_00432       522 TGAGAAAATCACTGACATTGCGGTGATTGCGATTTCTCACACATTTATTG    571
                     .||.||..|..|.||.||||||||.||.||..||||||||||||||||||
RBAM_002810__    402 GGACAAGCTGGCGGATATTGCGGTTATCGCTGTTTCTCACACATTTATTG    451

BSNT_00432       572 TGATGAGCTTTTATAGTGTGCTGAAGCTGTATGAAACACA-ATCGAGAGA    620
                     ||.||||.||||..|..|||.||||||||.|.|||.|.|| .|| ||.||
RBAM_002810__    452 TGCTGAGTTTTTTCAACGTGATGAAGCTGCACGAATCTCAGGTC-AGGGA    500

BSNT_00432       621 AAAACAGACAAGGCAGCAGCACGAGCACATGCTGATGATCGTTTCCAATT    670
                     ||||||.||.||..|||||||.|||||||||||||||||.||.||.||.|
RBAM_002810__    501 AAAACAAACGAGAAAGCAGCATGAGCACATGCTGATGATTGTGTCTAACT    550

BSNT_00432       671 TATATGAAGAAACGGTGCACCTAAAAAAGACATTGAAAACGACAGAGAAA    720
                     ||||||||||||||.|.||..|.|||||.||..||||||||||.|||.|.
RBAM_002810__    551 TATATGAAGAAACGATTCATTTGAAAAAAACGCTGAAAACGACGGAGCAT    600

BSNT_00432       721 GTGACAAACGATTCGTATCAGTTCTATCGGGAAATGAAGGGCAAGGATGT    770
                     |||||.||.||.||.||||||.|.|||||||||||||..||.||.||   
RBAM_002810__    601 GTGACGAAAGAATCCTATCAGCTATATCGGGAAATGAGCGGGAACGA---    647

BSNT_00432       771 TC----AGCTGAGCGGCAGAATCCTGAGACTGGCCGGAGAGATTCATGAA    816
                      |    ||||..|..||.||||.|||.|.||.||.|||||.|||||||||
RBAM_002810__    648 -CCGGGAGCTCGGTAGCCGAATGCTGCGCCTTGCGGGAGAAATTCATGAA    696

BSNT_00432       817 GTGAAAAAGGACAACCAGCGGATATTCGCAGGGCTTTCAAAACTGATTTC    866
                     ||||||||.|||||.|||||.||||||||.||..|.||.||.||||||||
RBAM_002810__    697 GTGAAAAAAGACAATCAGCGAATATTCGCCGGTTTGTCGAAGCTGATTTC    746

BSNT_00432       867 GAATGAGAGTTTGAGAGATTATATGAGGGCTTCTGATTTG--CTGCAGCT    914
                     .||||||||.||..|.|||||.||||..||..|.|.|.||  |.|||  |
RBAM_002810__    747 CAATGAGAGATTCCGGGATTACATGAATGCCGCCGCTCTGGTCGGCA--T    794

BSNT_00432       915 CGTGATTCGAATGAATGAAAAGTACGCTGAAGCACTAGGGAAGCAGATTG    964
                     |||.||.|||||.||||||||.|||||.|||.|..||||.|||.|.|||.
RBAM_002810__    795 CGTCATCCGAATCAATGAAAAATACGCCGAATCTTTAGGCAAGGACATTC    844

BSNT_00432       965 ATTTTTACTGCTCGATCGAGGGAGAGCATGACGAATATCACGTATTTATC   1014
                     |.||.....||..|||.||.|||||.|||..|||.||||||||.||||.|
RBAM_002810__    845 AATTCCGGAGCGTGATTGAAGGAGAACATCCCGATTATCACGTCTTTACC    894

BSNT_00432      1015 GTGCTTTCGATCATTAATAATCTAACAGCAAATGCGGTAGAGGCTATGGA   1064
                     ||.||.||||||.|.|||||.||.||.||.|||||.||.||.||.||||.
RBAM_002810__    895 GTCCTGTCGATCTTAAATAACCTGACCGCCAATGCCGTCGAAGCCATGGG    944

BSNT_00432      1065 TGA-AGAGG-GAATGGTCAGCCTGAGGCTCCGTA-AGCCAAATGAGAGTA   1111
                     .|| ||.|| ||  |.||.||||...|||.||.| .||..||.|||| .|
RBAM_002810__    945 AGACAGGGGTGA--GATCCGCCTCGCGCTGCGCAGGGCGGAAGGAGA-AA    991

BSNT_00432      1112 TGGTAGAATTCCAGGTGGAAGACAATGGCCCCGGGATTTCCGAGAAAATC   1161
                     .||..|||||.||||.||||||..|.||.|||||.|||.|.||.||||||
RBAM_002810__    992 AGGCTGAATTTCAGGCGGAAGATGACGGTCCCGGCATTCCGGAAAAAATC   1041

BSNT_00432      1162 GGAGACATTGTGTTTGA-CCCGGGCTTTACTTCAAAATATGACGAATTTG   1210
                     |||||..|.||.|.||| |||||| |||||.||.|||||.||.|||||.|
RBAM_002810__   1042 GGAGAGGTCGTTTATGATCCCGGG-TTTACGTCCAAATACGATGAATTCG   1090

BSNT_00432      1211 GCACGCCTTCTACGGGTATCGGACTTTCCTACGTAAAGGAAATCGTGACT   1260
                     ||||.|||||.|||||.|||||.|||.|.|||||.|||||||||||.|||
RBAM_002810__   1091 GCACACCTTCAACGGGCATCGGGCTTACTTACGTGAAGGAAATCGTAACT   1140

BSNT_00432      1261 GAGCTAGAAGGGGATATCACGTTTGATAATCAGC----AGCGGGGAGTGG   1306
                     ||.||.||.||.||.||..|.|||.||||..|||    |    ||.||..
RBAM_002810__   1141 GAACTTGACGGAGACATTTCCTTTCATAACAAGCCAAAA----GGCGTCA   1186

BSNT_00432      1307 TGTTTGCCATCAGGCTGCCTGTCCGGCATTTGATT-CAGAAAGGGTGA--   1353
                     |.|||.|.||.|..|||||.||...|||||||||| ||||||||.|||  
RBAM_002810__   1187 TATTTACGATTAAACTGCCGGTGAAGCATTTGATTGCAGAAAGGATGAAC   1236

BSNT_00432      1353 ------   1353
                           
RBAM_002810__   1237 TCATAA   1242


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