Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00431 and RBAM_002800

See Amino acid alignment / Visit BSNT_00431 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:11
# Commandline: needle
#    -asequence dna-align/BSNT_00431___ybgJ.1.9828.seq
#    -bsequence dna-align/RBAM_002800___ybgJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00431___ybgJ-RBAM_002800___ybgJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00431___ybgJ-RBAM_002800___ybgJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00431___ybgJ
# 2: RBAM_002800___ybgJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 986
# Identity:     786/986 (79.7%)
# Similarity:   786/986 (79.7%)
# Gaps:           4/986 ( 0.4%)
# Score: 3106.0
# 
#
#=======================================

BSNT_00431___      1 ATGAAAGAATTGATAAAAGAGCACC-AGAAAGACATAAACCCGGCGTTAC     49
                     ||||||||..||.|.|.|||||.|| .||||.|.|..|| |.|||.|.||
RBAM_002800__      1 ATGAAAGATATGGTCAGAGAGCGCCTTGAAAAAGAGGAA-CTGGCTTCAC     49

BSNT_00431___     50 AGCTTCATGATTGGGTTGAATACTATCGCCCTTTTGCCGCCAATGGACAA     99
                     ...|.||.||||||||.||..|.||.||.||.|||.|||.|||||||.||
RBAM_002800__     50 TTTTACAAGATTGGGTCGAGCATTACCGACCGTTTTCCGTCAATGGAAAA     99

BSNT_00431___    100 AGCGCAAACTATATCCCCGCTTTAGGAAAAGTCAATGATTCACAGCTCGG    149
                     ||||||||.|||||.|||||..|.|||.||.||||.||.||.|||||.||
RBAM_002800__    100 AGCGCAAATTATATACCCGCCCTCGGAGAAATCAACGACTCTCAGCTGGG    149

BSNT_00431___    150 CATCTGTGTATTGGAGCCTGATGGAACGATGATACACGCCGGCGACTGGA    199
                     |||.||..||||.|||||.|||||..|.|||||.||.|||||.||.||||
RBAM_002800__    150 CATTTGCATATTAGAGCCGGATGGCTCAATGATTCATGCCGGTGAATGGA    199

BSNT_00431___    200 ACGTCTCTTTTACCCTGCAAAGCATTTCAAAAGTGATTAGCTTTATTGCC    249
                     |.|||.|.||.||..||||.|||||.||||||||.||.||||||||||||
RBAM_002800__    200 ATGTCCCGTTCACATTGCAGAGCATCTCAAAAGTCATCAGCTTTATTGCC    249

BSNT_00431___    250 GCCTGCATGAGCCGCGGCATTCCCTATGTGCTGGACCGCGTAGATGTCGA    299
                     ||||||||||.|.|.||||||.|.||.||||||||.||.||.||.||.||
RBAM_002800__    250 GCCTGCATGAACAGAGGCATTTCTTACGTGCTGGATCGTGTGGACGTGGA    299

BSNT_00431___    300 GCCGACAGGCGACGCCTTTAATTCAATCATCCGGCTCGAAATCAACAAGC    349
                     .|||||.||.||.||.||||||||.|||||||||||.||||||.|.||.|
RBAM_002800__    300 ACCGACGGGTGATGCGTTTAATTCTATCATCCGGCTTGAAATCCATAAAC    349

BSNT_00431___    350 CGGGGAAGCCCTTCAATCCCATGATCAACGCGGGCGCCCTCACCATCGCT    399
                     |.||||||||||||||.||.||||||||.||.||||||.|.|||.||||.
RBAM_002800__    350 CCGGGAAGCCCTTCAACCCGATGATCAATGCCGGCGCCATTACCGTCGCC    399

BSNT_00431___    400 TCGATTCTTCCCGGAGAATCGGCATACGAAAAGCTCGAGTTTCTTTACTC    449
                     |||.|.|||||.||.|||.||||..|.||.||..|.||.|.|||.|..||
RBAM_002800__    400 TCGCTGCTTCCGGGTGAAACGGCGCATGATAAATTAGAATATCTCTTTTC    449

BSNT_00431___    450 GGTGATGGAAACTTTGATAGGAAAACGGCCGAGA-ATTCATGAGGAAGTA    498
                     .||..|.||||..||.|||||||||| |||.|.| |||||.|||||.||.
RBAM_002800__    450 CGTTTTTGAAAAATTAATAGGAAAAC-GCCCACACATTCACGAGGAGGTC    498

BSNT_00431___    499 TTCCGTTCTGAATGGGAAACCGCCCACCGCAACAGAGCGCTGGCCTACTA    548
                     |||||||||||||||.|.|||||.||.||.|||.|||||||.||||||||
RBAM_002800__    499 TTCCGTTCTGAATGGCAGACCGCGCATCGGAACCGAGCGCTCGCCTACTA    548

BSNT_00431___    549 TTTAAAAGAAACAAACTTTTTAGAAGCTGAAGTAGAAGAAACACTTGAGG    598
                     ||||||||||||.||||||.|.||.||.||.||.||||||||.|||||.|
RBAM_002800__    549 TTTAAAAGAAACGAACTTTCTCGAGGCGGATGTGGAAGAAACGCTTGAAG    598

BSNT_00431___    599 TGTACTTGAAGCAATGCGCTATGGAGAGCACCACAGAAGATATTGCGTTG    648
                     ||||.||.|||||.|||||.||||||.|.||.||.||.||.||.||.||.
RBAM_002800__    599 TGTATTTAAAGCAGTGCGCCATGGAGGGTACAACCGAGGACATCGCTTTA    648

BSNT_00431___    649 ATCGGCCTGATCCTTGCTCATGACGGGTATCATCCGATTCGACGCGAGCA    698
                     |||||..||||.|||||.||||||||.||.||||||||.|||||.||.||
RBAM_002800__    649 ATCGGATTGATACTTGCGCATGACGGATACCATCCGATCCGACGGGAACA    698

BSNT_00431___    699 GGTGATTCCAAAAGATGTGGCAAAATTGGCCAAGGCGTTAATGCTGACGT    748
                     |||.|||||.||||||||.||.|||.|.|||||.||..|.||||||||||
RBAM_002800__    699 GGTCATTCCGAAAGATGTCGCGAAACTCGCCAAAGCCCTGATGCTGACGT    748

BSNT_00431___    749 GCGGCATGTACAACGCTTCAGGCAAATATGCGGCGTTTGTCGGCGTGCCG    798
                     ||||.||||||||.||.|||||||||||||||||.||.||||||||.|||
RBAM_002800__    749 GCGGAATGTACAATGCGTCAGGCAAATATGCGGCTTTCGTCGGCGTCCCG    798

BSNT_00431___    799 GCCAAAAGCGGCGTCTCCGGCGGCATCATGGCGCTGGTGCCTCCAAGCGC    848
                     |||||||||||.||.|||||||||||.|||||..||||.||.||||||||
RBAM_002800__    799 GCCAAAAGCGGGGTATCCGGCGGCATTATGGCATTGGTTCCCCCAAGCGC    848

BSNT_00431___    849 CAGAAGAGAACAGCCTTTTCAATCCGGATGCGGCATCGGCATTTACGGGC    898
                     |||||||||||||||||||||...|||.||||||||||||||||||||.|
RBAM_002800__    849 CAGAAGAGAACAGCCTTTTCATAACGGCTGCGGCATCGGCATTTACGGTC    898

BSNT_00431___    899 CTGCCATTGATGAATACGGTAACAGCCTCACTGGCGGTATGCTGCTGAAG    948
                     |.|||||||||||||||||.||||||||.||.|||||.|||||||||||.
RBAM_002800__    899 CGGCCATTGATGAATACGGCAACAGCCTGACCGGCGGCATGCTGCTGAAA    948

BSNT_00431___    949 CATATGGCGCAGGAGTGGGAGCTCAGCATTTTTTAA    984
                     |||||.||.|||||||||||||||||.|||||||||
RBAM_002800__    949 CATATCGCACAGGAGTGGGAGCTCAGTATTTTTTAA    984


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