Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00416 and RBAM_002740

See Amino acid alignment / Visit BSNT_00416 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:10
# Commandline: needle
#    -asequence dna-align/BSNT_00416___ybfQ.1.9828.seq
#    -bsequence dna-align/RBAM_002740___ybfQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00416___ybfQ-RBAM_002740___ybfQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00416___ybfQ-RBAM_002740___ybfQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00416___ybfQ
# 2: RBAM_002740___ybfQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 971
# Identity:     777/971 (80.0%)
# Similarity:   777/971 (80.0%)
# Gaps:           4/971 ( 0.4%)
# Score: 3085.0
# 
#
#=======================================

BSNT_00416___      1 ATGGAAAAACAATACAGAGTATTACTTTACTATAAATATGTTCCGATTGA     50
                     ||||||||||||||.|||||.||||||||.|||||||||||...||||||
RBAM_002740__      1 ATGGAAAAACAATATAGAGTTTTACTTTATTATAAATATGTAAAGATTGA     50

BSNT_00416___     51 AGATCCAGAGGCGTTTAGAGAGCAGCATCTGGCTTTTTGTAAGGAGCTTG    100
                     .||.||.||.|.|||.|..|..||||||.||...||||||||||||||.|
RBAM_002740__     51 TGAGCCTGAAGAGTTCACGGCTCAGCATTTGAAGTTTTGTAAGGAGCTCG    100

BSNT_00416___    101 GTTTGTTAGGCCGTATCCTTG-TTTCTTCTGAAGGAATTAACGGTACGGT    149
                     ||.||||||||||||| .||| |||||...|||||.||||||||||||||
RBAM_002740__    101 GTCTGTTAGGCCGTAT-TTTGATTTCTGAAGAAGGCATTAACGGTACGGT    149

BSNT_00416___    150 ATCAGGTACGGTTGAACAGACTGAAAAATATATGGAAACAATGAAAGCTG    199
                     .||.||.||||||||||||||.|||.||||.|||.|..|..|||||||||
RBAM_002740__    150 GTCCGGAACGGTTGAACAGACGGAACAATACATGAATGCGCTGAAAGCTG    199

BSNT_00416___    200 ATCCTCGCTTTGCGGACATGGTATTTAAAATTGATGAAGCAGAAGGCCAT    249
                     ||||.||||||||.||||||....|.||||||||.||.||.||.||.|||
RBAM_002740__    200 ATCCGCGCTTTGCCGACATGCCGATCAAAATTGACGAGGCTGACGGACAT    249

BSNT_00416___    250 GCCTTCAAAAAAATCTTCGTCCGCCATAAAAAAGAGCTTGTAACGCTTCG    299
                     ||.|||...|||||.||.||.||||||||||||||..|.||.||||||||
RBAM_002740__    250 GCATTCCGCAAAATGTTTGTGCGCCATAAAAAAGAATTGGTGACGCTTCG    299

BSNT_00416___    300 TCTTGAAGATGATGTCGATCCGAACGAAACAACAGGCCAGCATTTGAAGC    349
                     |||.|||||||||||.||||||||.|..||.||.|||.||||||||||.|
RBAM_002740__    300 TCTCGAAGATGATGTTGATCCGAATGTCACGACGGGCAAGCATTTGAAAC    349

BSNT_00416___    350 CTGCAGAATTTTATGAGAAGATGCAGGATCCAAACACAATTGTCATCGAC    399
                     |...|||.|||||||||.|.|||||||||||..||||.||.||.||||||
RBAM_002740__    350 CGAAAGATTTTTATGAGCAAATGCAGGATCCTGACACGATCGTGATCGAC    399

BSNT_00416___    400 GCGCGTAACGATTACGAGTATGACCTTGGCCATTTCAGAGGTGCGGTCCG    449
                     ||..|.|||||.||.|||||||||||.||.||||||.|.||.||||||.|
RBAM_002740__    400 GCCAGAAACGACTATGAGTATGACCTCGGTCATTTCCGCGGAGCGGTCAG    449

BSNT_00416___    450 TCCTGACATCGAAGCCTTCCGTGAATTACCTGAATGGATTGAAGAGCACA    499
                     .|||||.||.||.||.||||||||..|.||.||.||||||||||||||||
RBAM_002740__    450 ACCTGATATTGAGGCGTTCCGTGAGCTGCCGGACTGGATTGAAGAGCACA    499

BSNT_00416___    500 AAGATATGCTTGAAGGCAAAAAGATTTTAACGTACTGTACAGGCGGCGTG    549
                     ||||.|||||||||||||||||.||..|.||||||||.|||||||||||.
RBAM_002740__    500 AAGACATGCTTGAAGGCAAAAAAATCCTCACGTACTGCACAGGCGGCGTA    549

BSNT_00416___    550 CGCTGTGAAAAGTTCTCAGGATGGCTGGTGAAGCAAGGCTTTGAAGATGT    599
                     |||||||||||.||.||.||.||||||.|||||.|.|||||||||||.||
RBAM_002740__    550 CGCTGTGAAAAATTTTCCGGCTGGCTGCTGAAGAAGGGCTTTGAAGACGT    599

BSNT_00416___    600 AGCTCAGCTTGATGGCGGAATCGTGACATACGGAAAAGATCCAGAGGTGC    649
                     ..|.||||||||.|||||.|||||.||.|||||.||||||||.||.|||.
RBAM_002740__    600 GTCCCAGCTTGACGGCGGTATCGTCACTTACGGTAAAGATCCTGAAGTGA    649

BSNT_00416___    650 AA-GGCAAGCTTTGGGACGGCCAGTGCTACGTATTTGATGAAAGAATCAG    698
                     || ||||| .|.||||||||.|||||||||||.|||||.|||||||||||
RBAM_002740__    650 AAGGGCAA-ATGTGGGACGGACAGTGCTACGTGTTTGACGAAAGAATCAG    698

BSNT_00416___    699 CGTGCCTGTCAACCGTGTCGAGCATGTGATTGTCGGCAAGGACTACTTTA    748
                     |||.||.||||||||.||.|||||.||.||..||||.||.|||||.||.|
RBAM_002740__    699 CGTACCGGTCAACCGCGTAGAGCACGTTATCATCGGAAAAGACTATTTCA    748

BSNT_00416___    749 CAGGAGAACCGTGTGAGCGTTATGTGAACTGCGCAAATCCATCTTGCAAT    798
                     |.||.||.|||||.|||||||||||||||||.||||||||..|.||.|||
RBAM_002740__    749 CGGGCGAGCCGTGCGAGCGTTATGTGAACTGTGCAAATCCGGCATGTAAT    798

BSNT_00416___    799 AAAAAAATGATATGCACACCGGAAAATGAGTATAAATATATGCGCAGCTG    848
                     |||||||||||.||||||||.||.|||||.||.|||||.|||||||||||
RBAM_002740__    799 AAAAAAATGATCTGCACACCTGAGAATGAATACAAATACATGCGCAGCTG    848

BSNT_00416___    849 CAGCCACGAATGCCGCACGAACCCAAGAAACCTGTATGTGAAAGAGCATA    898
                     |||.|||||||||||.||||||..|.|.|||.||||||||||||||||..
RBAM_002740__    849 CAGTCACGAATGCCGTACGAACGAACGCAACATGTATGTGAAAGAGCACG    898

BSNT_00416___    899 ATATGACAGAAGAAGAAGTAAACGCAAGACTGGCAGCGATTGAAACAGAA    948
                     |||||||..|.||||||.|.||.|.|.|.||.||...||||||||.|||.
RBAM_002740__    899 ATATGACTCAGGAAGAAATCAATGAACGCCTTGCTTTGATTGAAAAAGAG    948

BSNT_00416___    949 GATCACGCTGCTGCTGAATAA    969
                     |||||.||.||...|||.|||
RBAM_002740__    949 GATCATGCGGCGATTGATTAA    969


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00416 and RBAM_002740

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
