Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00409 and RBAM_002720

See Amino acid alignment / Visit BSNT_00409 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:10
# Commandline: needle
#    -asequence dna-align/BSNT_00409___psd.1.9828.seq
#    -bsequence dna-align/RBAM_002720___psd.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00409___psd-RBAM_002720___psd.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00409___psd-RBAM_002720___psd.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00409___psd
# 2: RBAM_002720___psd
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 832
# Identity:     593/832 (71.3%)
# Similarity:   593/832 (71.3%)
# Gaps:          56/832 ( 6.7%)
# Score: 2065.0
# 
#
#=======================================

BSNT_00409___      1 ATGTTTAATACGGCTG-TAAAGATTCTGTATCGATCATTGATAGAGCTGA     49
                     |||||||||||.||.| ||||| ||||.||.||.||||||||.||.||||
RBAM_002720__      1 ATGTTTAATACTGCCGCTAAAG-TTCTTTACCGTTCATTGATTGAACTGA     49

BSNT_00409___     50 CGAATCATCGTCTGTCATCCTATCTGATTAAAGGATTTTGCGAGTCAAAA     99
                     |.|||.||||..||.|.||.|||||.||||||...||.||.||.||.|||
RBAM_002720__     50 CTAATAATCGATTGACGTCTTATCTCATTAAAAACTTCTGTGAATCGAAA     99

BSNT_00409___    100 ATCAGCAAACCGGTCATTCCGCTTTTCTCAAAACATTTTCGGCTGAATTG    149
                     .|.|||||.|||.|.||||||||.||.||.|||||.|.|||..|.||.||
RBAM_002720__    100 CTGAGCAAGCCGATGATTCCGCTGTTTTCCAAACACTATCGCATCAACTG    149

BSNT_00409___    150 GGATGATGTGGACGGTACGGCTGCTGATTACGGATCGCTGTCTGAATTGT    199
                     |.||||...|||..|.||||||.||||.|..|..||.|||.|...|||.|
RBAM_002720__    150 GAATGAAACGGAGCGCACGGCTTCTGACTTTGATTCACTGGCGTCATTTT    199

BSNT_00409___    200 TTATTCGACAAATAAATCTGGAGCGGCGCCCTGTGTCAAAAGAGGCGCAT    249
                     |.|||||..|.||.|||.||.|.|..|||||.|||.||||||||..|.|.
RBAM_002720__    200 TCATTCGTGATATTAATTTGAATCTCCGCCCCGTGGCAAAAGAGAAGAAC    249

BSNT_00409___    250 GCGGTGGTCAGCCCTGTTGACGGTGTGGTTCAGACGGTAGGAATCATCAA    299
                     ||..|.||||||||.||.|||||.||.|||||||||||.||.||.||.||
RBAM_002720__    250 GCCATCGTCAGCCCGGTGGACGGCGTCGTTCAGACGGTGGGCATGATTAA    299

BSNT_00409___    300 CCCGAATCAAACCTTTACGGTGAAGGGAAAAGATTACTCATTCGCTGAAC    349
                     .||.||||||||.||.|.|||.||.||.||.|||||.||.|||||.||||
RBAM_002720__    300 ACCCAATCAAACTTTCATGGTAAAAGGGAAGGATTATTCGTTCGCCGAAC    349

BSNT_00409___    350 TGACCGGCTGTAAAAGCGCAGACCATCAA-TACAACGGCGGATACTTCGT    398
                     ||||.||.|.|||||||||.||.|| ||| ||.||||||||.|..||.|.
RBAM_002720__    350 TGACGGGGTTTAAAAGCGCCGATCA-CAAGTATAACGGCGGGTGTTTTGC    398

BSNT_00409___    399 CGTGCTGTATTTAAGCCCGAGGCATTATCACCGTTTCCATTCTCCGATTA    448
                     ||||||.||..|.||||||||.|||||.|||||.|||||||||||..|.|
RBAM_002720__    399 CGTGCTTTACCTGAGCCCGAGACATTACCACCGCTTCCATTCTCCCGTCA    448

BSNT_00409___    449 GCTGCAGGTATCAAAAGCTGGCCGAGCTCGGAAATCGCTCATA-CCCGGT    497
                     ||||||.||||||.||||||||||||||.||.||.|||||.|| ||||.|
RBAM_002720__    449 GCTGCACGTATCAGAAGCTGGCCGAGCTGGGGAAACGCTCCTATCCCGTT    498

BSNT_00409___    498 AAATCAATTAGGCTTAAAATACGGGAAAGATGTGCTGTCGAAAAATTACC    547
                     ||..|.| |.||.|||||.|||||||||||||||||.||.||||||||||
RBAM_002720__    499 AATACGA-TGGGGTTAAAGTACGGGAAAGATGTGCTCTCAAAAAATTACC    547

BSNT_00409___    548 GATTTGTGTACGAGCTGAATAGTG----GCAGCCGAAATGTCCTGATGAT    593
                     |.|.||||||||||||||...|||    .||||.||    |.||.|||||
RBAM_002720__    548 GTTATGTGTACGAGCTGACCCGTGCTGACCAGCAGA----TGCTCATGAT    593

BSNT_00409___    594 TCCTGTCGGCGCGATGAATATTAATTCTATCGTGCAGACGAATACCCG-T    642
                     |||.||.||.||||||||||||||.||.|||||.|||||.||.|||.| .
RBAM_002720__    594 TCCGGTAGGTGCGATGAATATTAACTCGATCGTTCAGACAAACACCGGAA    643

BSNT_00409___    643 ACTGAATTGGAGATCGGCGAAGAGCTGGGATACTTTTCATTTGGCTCAAC    692
                     ||.|..|| ||||..||.|||||||||||.||.|||||||||||.||.||
RBAM_002720__    644 ACAGGCTT-GAGACGGGGGAAGAGCTGGGCTATTTTTCATTTGGATCGAC    692

BSNT_00409___    693 CGTCATTTTGATTTTTGAAAAAGACGCGTT--CCAGCCGTCCG----CCC    736
                     |||.|||||..|.||.||.|||||...|||  ||  ||.||.|    || 
RBAM_002720__    693 CGTTATTTTAGTATTCGAGAAAGATATGTTTACC--CCTTCGGATAACC-    739

BSNT_00409___    737 ATTTAGCAGAAGGCCAAGAAGTTCAAGTCGG--AGAACTGATAGGTTATG    784
                        |..|.|||||||..|||.|.||.|||||  |||  |.||.|||||||
RBAM_002720__    740 ---TGACTGAAGGCCGTGAATTACAGGTCGGCCAGA--TCATCGGTTATG    784

BSNT_00409___    785 AAGAGTAA------------------------    792
                     ..||||.|                        
RBAM_002720__    785 CGGAGTCACAGGAGGAGGCGTCCGCTTTATAA    816


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00409 and RBAM_002720

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
