Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00374 and RBAM_002580

See Amino acid alignment / Visit BSNT_00374 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence dna-align/BSNT_00374___ybeC.1.9828.seq
#    -bsequence dna-align/RBAM_002580___ybeC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00374___ybeC-RBAM_002580___ybeC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00374___ybeC-RBAM_002580___ybeC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00374___ybeC
# 2: RBAM_002580___ybeC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1646
# Identity:    1317/1646 (80.0%)
# Similarity:  1317/1646 (80.0%)
# Gaps:          16/1646 ( 1.0%)
# Score: 5249.0
# 
#
#=======================================

BSNT_00374___      1 ATGAAAGGTGTTTACGATATGAATCAATTGCATCGAAGAATGGGAACGTT     50
                     .|||||||||||.||..||||||||||||.|||||.||||||||||||||
RBAM_002580__      1 TTGAAAGGTGTTAACTTTATGAATCAATTACATCGCAGAATGGGAACGTT     50

BSNT_00374___     51 TTCCCTCATGATGGTCGGGCTCGGGTCGATGATCGGTTCAGGCTGGCTGT    100
                     |.|.||||||||||||||.||.|||||||||||.||.||.||||||.|.|
RBAM_002580__     51 TGCACTCATGATGGTCGGACTTGGGTCGATGATTGGCTCCGGCTGGTTAT    100

BSNT_00374___    101 TCGGGGCTTGGCGTGCTGCTCAAATAGCAGGACCAGCTGCTATTATTTCA    150
                     |||||||.|||||.||.|||||.||.||.|||||.||.||.||||||||.
RBAM_002580__    101 TCGGGGCGTGGCGGGCGGCTCAGATTGCGGGACCTGCCGCAATTATTTCC    150

BSNT_00374___    151 TGGGTTATTGGAATGGTCGTCATTTTATTTATTGCTCTTTCTTATAGTGA    200
                     |||.||||.||.|||.||||.|||||.|||||.||.||||||||.|||||
RBAM_002580__    151 TGGATTATCGGTATGATCGTTATTTTGTTTATCGCACTTTCTTACAGTGA    200

BSNT_00374___    201 ACTAGGTTCTATGTTCCCTGAAGCGGGGGGAATGGTAAAATATACGCAAT    250
                     |.|.|||||.||||||||.|||||.||||||||||||||||||||.||||
RBAM_002580__    201 ATTGGGTTCAATGTTCCCGGAAGCCGGGGGAATGGTAAAATATACTCAAT    250

BSNT_00374___    251 ATTCACACGGTTCGTTTATCGGTTTTATTGCGGGCTGGGCCAACTGGATT    300
                     ||||.||.||.||.|||||.||.|||||.||.||.|||||.|||||||||
RBAM_002580__    251 ATTCTCATGGATCATTTATTGGATTTATCGCAGGATGGGCAAACTGGATT    300

BSNT_00374___    301 GCGATTGTGTCCGTCATTCCGGTTGAAGCGGTGGCCTCCGTTCAATATAT    350
                     ||||||||.|||||.||||||||.||||||||.||.||.||||||||.||
RBAM_002580__    301 GCGATTGTTTCCGTTATTCCGGTGGAAGCGGTTGCGTCTGTTCAATACAT    350

BSNT_00374___    351 GAGTTCTTGGCCATGGGAATGGGCGAAATGGACAAGCGGTTTGGTGAAGA    400
                     |||.||.|||||.|||||||||||.||||||||||||..|.|.||..|.|
RBAM_002580__    351 GAGCTCATGGCCGTGGGAATGGGCAAAATGGACAAGCAATCTCGTTCACA    400

BSNT_00374___    401 ATGGAACGCTGACTGGGGAAGGGCTAGCATTTGCCTCTGTATTACTTCTC    450
                     |.||.||.||.||.||.||.|||||.|..||.||.||.||||||||..|.
RBAM_002580__    401 ACGGCACTCTTACGGGAGAGGGGCTCGGCTTCGCATCCGTATTACTGATT    450

BSNT_00374___    451 ATTTATTTTCTGCTGAACTATTGGACAGTCAATCTATTTTCGAAAGCGAA    500
                     |||||.|||.|.|||||.|||||||||||.||..|||||||.||||||||
RBAM_002580__    451 ATTTACTTTTTACTGAATTATTGGACAGTTAACTTATTTTCAAAAGCGAA    500

BSNT_00374___    501 TTCATTAATTACGATTTTTAAAATTATTATTCCGGGTCTTACGATTGGAG    550
                     ||||||.|||||.||.||||||||.|||||||||||.||.||.||.||||
RBAM_002580__    501 TTCATTGATTACCATCTTTAAAATCATTATTCCGGGGCTGACAATCGGAG    550

BSNT_00374___    551 CTTTGCTGTTTGTCGGATTCCACGGAGAAAACTTTACTGGCGGTCAAAGC    600
                     |..||||||||..|||.||.||.||.|.||||||.||...||||..|||.
RBAM_002580__    551 CGCTGCTGTTTACCGGTTTTCATGGCGGAAACTTCACATCCGGTTCAAGT    600

BSNT_00374___    601 ATTGCGCCGAATGGCTGGGCAAGTGTGCTGACGGCGGTTGCCACTTCCGG    650
                     |||||||||||.|||||||||||.||||||||||||||.|||||.||.||
RBAM_002580__    601 ATTGCGCCGAACGGCTGGGCAAGCGTGCTGACGGCGGTGGCCACATCAGG    650

BSNT_00374___    651 TATCGTTTTTGCGTTTAACGGTTTCCAAAGCCCGATTAATATGGCGGGTG    700
                     ||||||.||||||||||||||.||.||||||||||||||.|||||.||.|
RBAM_002580__    651 TATCGTATTTGCGTTTAACGGGTTTCAAAGCCCGATTAACATGGCCGGAG    700

BSNT_00374___    701 AAGCAAAAAATCCGGGGAAATCAATTCCGATTGCGGTTGTTGGCTCTCTT    750
                     |||||||||||||.||.|||||.|||||||||||||||||.||.||.||.
RBAM_002580__    701 AAGCAAAAAATCCCGGCAAATCGATTCCGATTGCGGTTGTCGGTTCGCTG    750

BSNT_00374___    751 TTCGTTGCGACAGTGATTTATGTCCTGCTGCAGATCGCCTTCATTGGAGC    800
                     .|.||.||.||.||.|||||.|||||..||||.|||||.||.||.||.||
RBAM_002580__    751 CTGGTCGCAACCGTCATTTACGTCCTATTGCAAATCGCATTTATCGGTGC    800

BSNT_00374___    801 TG-TGAATCCTTC--TGATATTGCTCACGGCTGGAGCCATCTGAATTTTA    847
                     .| |||| |||||  ||  ||.|.||||||||||||.||.|||||.||.|
RBAM_002580__    801 GGTTGAA-CCTTCCATG--ATCGTTCACGGCTGGAGTCACCTGAACTTCA    847

BSNT_00374___    848 ATTCTCCTTTTGCTGATCTGGCGATTGCGCTGAATATTAACTGGCTAGTT    897
                     |.|||||.|||||.|||.|||||||.||..|||||||.||||||||.||.
RBAM_002580__    848 ACTCTCCATTTGCCGATTTGGCGATCGCATTGAATATCAACTGGCTTGTC    897

BSNT_00374___    898 ATTGTGTTATATGCGGATGCATTTGTATCACCGTCTGGAACGGGGATTAC    947
                     |||.|..|.|||||||||||.||.|||||.|||||.||||||||.||.||
RBAM_002580__    898 ATTATTCTTTATGCGGATGCGTTCGTATCTCCGTCGGGAACGGGTATCAC    947

BSNT_00374___    948 GTATACGGCGACAACGTCCCGAATGATTTACGGAATGGAAAAAAACAAAT    997
                     .|||||.||.||.|||||.||.|||||||||||.|||||||||||.||||
RBAM_002580__    948 TTATACCGCTACGACGTCACGCATGATTTACGGCATGGAAAAAAATAAAT    997

BSNT_00374___    998 ACATGCCGAGTATATTCGGGAAGCTTCATCCGATTTACGGCGTTCCGCGA   1047
                     |.||||||||.||.|||||.||||||||||||.|.||||||||.|||||.
RBAM_002580__    998 ATATGCCGAGCATTTTCGGAAAGCTTCATCCGCTGTACGGCGTGCCGCGC   1047

BSNT_00374___   1048 CAAGCAATGTTCTTTAACTTGATTGTGTCGTTCATCTTTTTGTTCCTGTT   1097
                     |||||.|||.|.||.|||.||||.||.|||||.||||||.||||..|.||
RBAM_002580__   1048 CAAGCGATGATTTTCAACCTGATCGTATCGTTTATCTTTCTGTTTTTATT   1097

BSNT_00374___   1098 CAGAGGGTGGGGCGTATTAGCGGAAATTATTTCTGTTGCTACGTTAATTT   1147
                     ||||||.||||||||..|.||.|||||.|||||.|||||.|||.|.||||
RBAM_002580__   1098 CAGAGGATGGGGCGTGCTTGCTGAAATCATTTCCGTTGCGACGCTGATTT   1147

BSNT_00374___   1148 CTTATATCACCGG-CCCGATCACAGTCATGACATTGAGACGGACGGGGAA   1196
                     ||||||||||.|| |||| |.||.||.|||||..||.|.|||||||.|..
RBAM_002580__   1148 CTTATATCACGGGTCCCG-TGACGGTGATGACGCTGCGGCGGACGGCGGC   1196

BSNT_00374___   1197 AGACCTGTACAGGCCTCTTCGTTTAAAAGGTTTAAACGTGATTGCGCCGC   1246
                     .||..|||||.|||||||.|||.|.|||||..|.|.||||.||||.||||
RBAM_002580__   1197 GGATTTGTACCGGCCTCTCCGTCTGAAAGGCCTCAGCGTGGTTGCACCGC   1246

BSNT_00374___   1247 TTGGATTTATCTTTGCGTCACTGGTGCTGTATTGGGCGCGCTGGCCGTTA   1296
                     |.||.||..|.||.|||||.||.|||||||||||||||||||||||||||
RBAM_002580__   1247 TCGGCTTCGTGTTCGCGTCTCTCGTGCTGTATTGGGCGCGCTGGCCGTTA   1296

BSNT_00374___   1297 ACAGGGCAGGTTCTGTTTATTATCCTGATCGGTCTTCCCATTTATTTCTA   1346
                     |||||||||||.||||||||.||..|||||||.|||||.|||||||||||
RBAM_002580__   1297 ACAGGGCAGGTGCTGTTTATCATTTTGATCGGCCTTCCGATTTATTTCTA   1346

BSNT_00374___   1347 TTATCAGGCGAAGGCGAAATGGAAAGGGTTTGGCCGAAACTTCAAAGCCG   1396
                     .||.||.|||||.|||||.||||||||.||..||.|||||||.||||.||
RBAM_002580__   1347 CTACCAAGCGAAAGCGAAGTGGAAAGGATTCCGCAGAAACTTTAAAGGCG   1396

BSNT_00374___   1397 GCGTTTGGATGATGTTTTATCTGCTGGCCATGATGGTCATTTCTTATTTG   1446
                     ||||.||||||.|..|.||||||||...|||||||||||||||.|...|.
RBAM_002580__   1397 GCGTCTGGATGGTTGTCTATCTGCTCAGCATGATGGTCATTTCATGGCTC   1446

BSNT_00374___   1447 GGCAGTGATAAATTCGGCGGCCTGAATGTCATTCATTATGGCTGGGATAT   1496
                     ||.|||||.|||||||||||.|||||..||||||..||.|||||||||||
RBAM_002580__   1447 GGAAGTGAAAAATTCGGCGGTCTGAACATCATTCCGTACGGCTGGGATAT   1496

BSNT_00374___   1497 GGTTCTGATTGCGATGGTATCACTTGTATTCTATGTGTGGGCGCTGAAGA   1546
                     ||..|||||.||.||.||..|.||||..|||||||.||||||||||||||
RBAM_002580__   1497 GGGGCTGATCGCAATCGTTGCCCTTGCCTTCTATGCGTGGGCGCTGAAGA   1546

BSNT_00374___   1547 GCGGCTACCAGACAGAATACTTAAAGGATGCGAAAGAGATCAATTCTCAG   1596
                     ||||.|.|.||||.||.||.||.||.||.||.||||..||||||..||| 
RBAM_002580__   1547 GCGGATTCAAGACTGAGTATTTGAAAGACGCCAAAGCAATCAATGATCA-   1595

BSNT_00374___   1597 CTGCTTAA----TGGACAGTCAGAAGCTGCTGCCGGAAAAGAATAA   1638
                        .||||    .||||||.|.|||||.||||||||||||||||||
RBAM_002580__   1596 ---ATTAAAAGGCGGACAGGCGGAAGCCGCTGCCGGAAAAGAATAA   1638


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