Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00374 and RBAM_002580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:09
# Commandline: needle
# -asequence dna-align/BSNT_00374___ybeC.1.9828.seq
# -bsequence dna-align/RBAM_002580___ybeC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00374___ybeC-RBAM_002580___ybeC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00374___ybeC-RBAM_002580___ybeC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00374___ybeC
# 2: RBAM_002580___ybeC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1646
# Identity: 1317/1646 (80.0%)
# Similarity: 1317/1646 (80.0%)
# Gaps: 16/1646 ( 1.0%)
# Score: 5249.0
#
#
#=======================================
BSNT_00374___ 1 ATGAAAGGTGTTTACGATATGAATCAATTGCATCGAAGAATGGGAACGTT 50
.|||||||||||.||..||||||||||||.|||||.||||||||||||||
RBAM_002580__ 1 TTGAAAGGTGTTAACTTTATGAATCAATTACATCGCAGAATGGGAACGTT 50
BSNT_00374___ 51 TTCCCTCATGATGGTCGGGCTCGGGTCGATGATCGGTTCAGGCTGGCTGT 100
|.|.||||||||||||||.||.|||||||||||.||.||.||||||.|.|
RBAM_002580__ 51 TGCACTCATGATGGTCGGACTTGGGTCGATGATTGGCTCCGGCTGGTTAT 100
BSNT_00374___ 101 TCGGGGCTTGGCGTGCTGCTCAAATAGCAGGACCAGCTGCTATTATTTCA 150
|||||||.|||||.||.|||||.||.||.|||||.||.||.||||||||.
RBAM_002580__ 101 TCGGGGCGTGGCGGGCGGCTCAGATTGCGGGACCTGCCGCAATTATTTCC 150
BSNT_00374___ 151 TGGGTTATTGGAATGGTCGTCATTTTATTTATTGCTCTTTCTTATAGTGA 200
|||.||||.||.|||.||||.|||||.|||||.||.||||||||.|||||
RBAM_002580__ 151 TGGATTATCGGTATGATCGTTATTTTGTTTATCGCACTTTCTTACAGTGA 200
BSNT_00374___ 201 ACTAGGTTCTATGTTCCCTGAAGCGGGGGGAATGGTAAAATATACGCAAT 250
|.|.|||||.||||||||.|||||.||||||||||||||||||||.||||
RBAM_002580__ 201 ATTGGGTTCAATGTTCCCGGAAGCCGGGGGAATGGTAAAATATACTCAAT 250
BSNT_00374___ 251 ATTCACACGGTTCGTTTATCGGTTTTATTGCGGGCTGGGCCAACTGGATT 300
||||.||.||.||.|||||.||.|||||.||.||.|||||.|||||||||
RBAM_002580__ 251 ATTCTCATGGATCATTTATTGGATTTATCGCAGGATGGGCAAACTGGATT 300
BSNT_00374___ 301 GCGATTGTGTCCGTCATTCCGGTTGAAGCGGTGGCCTCCGTTCAATATAT 350
||||||||.|||||.||||||||.||||||||.||.||.||||||||.||
RBAM_002580__ 301 GCGATTGTTTCCGTTATTCCGGTGGAAGCGGTTGCGTCTGTTCAATACAT 350
BSNT_00374___ 351 GAGTTCTTGGCCATGGGAATGGGCGAAATGGACAAGCGGTTTGGTGAAGA 400
|||.||.|||||.|||||||||||.||||||||||||..|.|.||..|.|
RBAM_002580__ 351 GAGCTCATGGCCGTGGGAATGGGCAAAATGGACAAGCAATCTCGTTCACA 400
BSNT_00374___ 401 ATGGAACGCTGACTGGGGAAGGGCTAGCATTTGCCTCTGTATTACTTCTC 450
|.||.||.||.||.||.||.|||||.|..||.||.||.||||||||..|.
RBAM_002580__ 401 ACGGCACTCTTACGGGAGAGGGGCTCGGCTTCGCATCCGTATTACTGATT 450
BSNT_00374___ 451 ATTTATTTTCTGCTGAACTATTGGACAGTCAATCTATTTTCGAAAGCGAA 500
|||||.|||.|.|||||.|||||||||||.||..|||||||.||||||||
RBAM_002580__ 451 ATTTACTTTTTACTGAATTATTGGACAGTTAACTTATTTTCAAAAGCGAA 500
BSNT_00374___ 501 TTCATTAATTACGATTTTTAAAATTATTATTCCGGGTCTTACGATTGGAG 550
||||||.|||||.||.||||||||.|||||||||||.||.||.||.||||
RBAM_002580__ 501 TTCATTGATTACCATCTTTAAAATCATTATTCCGGGGCTGACAATCGGAG 550
BSNT_00374___ 551 CTTTGCTGTTTGTCGGATTCCACGGAGAAAACTTTACTGGCGGTCAAAGC 600
|..||||||||..|||.||.||.||.|.||||||.||...||||..|||.
RBAM_002580__ 551 CGCTGCTGTTTACCGGTTTTCATGGCGGAAACTTCACATCCGGTTCAAGT 600
BSNT_00374___ 601 ATTGCGCCGAATGGCTGGGCAAGTGTGCTGACGGCGGTTGCCACTTCCGG 650
|||||||||||.|||||||||||.||||||||||||||.|||||.||.||
RBAM_002580__ 601 ATTGCGCCGAACGGCTGGGCAAGCGTGCTGACGGCGGTGGCCACATCAGG 650
BSNT_00374___ 651 TATCGTTTTTGCGTTTAACGGTTTCCAAAGCCCGATTAATATGGCGGGTG 700
||||||.||||||||||||||.||.||||||||||||||.|||||.||.|
RBAM_002580__ 651 TATCGTATTTGCGTTTAACGGGTTTCAAAGCCCGATTAACATGGCCGGAG 700
BSNT_00374___ 701 AAGCAAAAAATCCGGGGAAATCAATTCCGATTGCGGTTGTTGGCTCTCTT 750
|||||||||||||.||.|||||.|||||||||||||||||.||.||.||.
RBAM_002580__ 701 AAGCAAAAAATCCCGGCAAATCGATTCCGATTGCGGTTGTCGGTTCGCTG 750
BSNT_00374___ 751 TTCGTTGCGACAGTGATTTATGTCCTGCTGCAGATCGCCTTCATTGGAGC 800
.|.||.||.||.||.|||||.|||||..||||.|||||.||.||.||.||
RBAM_002580__ 751 CTGGTCGCAACCGTCATTTACGTCCTATTGCAAATCGCATTTATCGGTGC 800
BSNT_00374___ 801 TG-TGAATCCTTC--TGATATTGCTCACGGCTGGAGCCATCTGAATTTTA 847
.| |||| ||||| || ||.|.||||||||||||.||.|||||.||.|
RBAM_002580__ 801 GGTTGAA-CCTTCCATG--ATCGTTCACGGCTGGAGTCACCTGAACTTCA 847
BSNT_00374___ 848 ATTCTCCTTTTGCTGATCTGGCGATTGCGCTGAATATTAACTGGCTAGTT 897
|.|||||.|||||.|||.|||||||.||..|||||||.||||||||.||.
RBAM_002580__ 848 ACTCTCCATTTGCCGATTTGGCGATCGCATTGAATATCAACTGGCTTGTC 897
BSNT_00374___ 898 ATTGTGTTATATGCGGATGCATTTGTATCACCGTCTGGAACGGGGATTAC 947
|||.|..|.|||||||||||.||.|||||.|||||.||||||||.||.||
RBAM_002580__ 898 ATTATTCTTTATGCGGATGCGTTCGTATCTCCGTCGGGAACGGGTATCAC 947
BSNT_00374___ 948 GTATACGGCGACAACGTCCCGAATGATTTACGGAATGGAAAAAAACAAAT 997
.|||||.||.||.|||||.||.|||||||||||.|||||||||||.||||
RBAM_002580__ 948 TTATACCGCTACGACGTCACGCATGATTTACGGCATGGAAAAAAATAAAT 997
BSNT_00374___ 998 ACATGCCGAGTATATTCGGGAAGCTTCATCCGATTTACGGCGTTCCGCGA 1047
|.||||||||.||.|||||.||||||||||||.|.||||||||.|||||.
RBAM_002580__ 998 ATATGCCGAGCATTTTCGGAAAGCTTCATCCGCTGTACGGCGTGCCGCGC 1047
BSNT_00374___ 1048 CAAGCAATGTTCTTTAACTTGATTGTGTCGTTCATCTTTTTGTTCCTGTT 1097
|||||.|||.|.||.|||.||||.||.|||||.||||||.||||..|.||
RBAM_002580__ 1048 CAAGCGATGATTTTCAACCTGATCGTATCGTTTATCTTTCTGTTTTTATT 1097
BSNT_00374___ 1098 CAGAGGGTGGGGCGTATTAGCGGAAATTATTTCTGTTGCTACGTTAATTT 1147
||||||.||||||||..|.||.|||||.|||||.|||||.|||.|.||||
RBAM_002580__ 1098 CAGAGGATGGGGCGTGCTTGCTGAAATCATTTCCGTTGCGACGCTGATTT 1147
BSNT_00374___ 1148 CTTATATCACCGG-CCCGATCACAGTCATGACATTGAGACGGACGGGGAA 1196
||||||||||.|| |||| |.||.||.|||||..||.|.|||||||.|..
RBAM_002580__ 1148 CTTATATCACGGGTCCCG-TGACGGTGATGACGCTGCGGCGGACGGCGGC 1196
BSNT_00374___ 1197 AGACCTGTACAGGCCTCTTCGTTTAAAAGGTTTAAACGTGATTGCGCCGC 1246
.||..|||||.|||||||.|||.|.|||||..|.|.||||.||||.||||
RBAM_002580__ 1197 GGATTTGTACCGGCCTCTCCGTCTGAAAGGCCTCAGCGTGGTTGCACCGC 1246
BSNT_00374___ 1247 TTGGATTTATCTTTGCGTCACTGGTGCTGTATTGGGCGCGCTGGCCGTTA 1296
|.||.||..|.||.|||||.||.|||||||||||||||||||||||||||
RBAM_002580__ 1247 TCGGCTTCGTGTTCGCGTCTCTCGTGCTGTATTGGGCGCGCTGGCCGTTA 1296
BSNT_00374___ 1297 ACAGGGCAGGTTCTGTTTATTATCCTGATCGGTCTTCCCATTTATTTCTA 1346
|||||||||||.||||||||.||..|||||||.|||||.|||||||||||
RBAM_002580__ 1297 ACAGGGCAGGTGCTGTTTATCATTTTGATCGGCCTTCCGATTTATTTCTA 1346
BSNT_00374___ 1347 TTATCAGGCGAAGGCGAAATGGAAAGGGTTTGGCCGAAACTTCAAAGCCG 1396
.||.||.|||||.|||||.||||||||.||..||.|||||||.||||.||
RBAM_002580__ 1347 CTACCAAGCGAAAGCGAAGTGGAAAGGATTCCGCAGAAACTTTAAAGGCG 1396
BSNT_00374___ 1397 GCGTTTGGATGATGTTTTATCTGCTGGCCATGATGGTCATTTCTTATTTG 1446
||||.||||||.|..|.||||||||...|||||||||||||||.|...|.
RBAM_002580__ 1397 GCGTCTGGATGGTTGTCTATCTGCTCAGCATGATGGTCATTTCATGGCTC 1446
BSNT_00374___ 1447 GGCAGTGATAAATTCGGCGGCCTGAATGTCATTCATTATGGCTGGGATAT 1496
||.|||||.|||||||||||.|||||..||||||..||.|||||||||||
RBAM_002580__ 1447 GGAAGTGAAAAATTCGGCGGTCTGAACATCATTCCGTACGGCTGGGATAT 1496
BSNT_00374___ 1497 GGTTCTGATTGCGATGGTATCACTTGTATTCTATGTGTGGGCGCTGAAGA 1546
||..|||||.||.||.||..|.||||..|||||||.||||||||||||||
RBAM_002580__ 1497 GGGGCTGATCGCAATCGTTGCCCTTGCCTTCTATGCGTGGGCGCTGAAGA 1546
BSNT_00374___ 1547 GCGGCTACCAGACAGAATACTTAAAGGATGCGAAAGAGATCAATTCTCAG 1596
||||.|.|.||||.||.||.||.||.||.||.||||..||||||..|||
RBAM_002580__ 1547 GCGGATTCAAGACTGAGTATTTGAAAGACGCCAAAGCAATCAATGATCA- 1595
BSNT_00374___ 1597 CTGCTTAA----TGGACAGTCAGAAGCTGCTGCCGGAAAAGAATAA 1638
.|||| .||||||.|.|||||.||||||||||||||||||
RBAM_002580__ 1596 ---ATTAAAAGGCGGACAGGCGGAAGCCGCTGCCGGAAAAGAATAA 1638
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