Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00367 and RBAM_002550

See Amino acid alignment / Visit BSNT_00367 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:08
# Commandline: needle
#    -asequence dna-align/BSNT_00367___csgA.1.9828.seq
#    -bsequence dna-align/RBAM_002550___csgA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00367___csgA-RBAM_002550___csgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00367___csgA-RBAM_002550___csgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00367___csgA
# 2: RBAM_002550___csgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 253
# Identity:     181/253 (71.5%)
# Similarity:   181/253 (71.5%)
# Gaps:           5/253 ( 2.0%)
# Score: 617.0
# 
#
#=======================================

BSNT_00367___      1 ---ATGGATGTTACACTCGGTTATTTGCGCGAATCACTTTCGAATCATCT     47
                        |||||....||||||||.|||||||||||.||.||||||||.||..|
RBAM_002550__      1 ATGATGGACAGGACACTCGGATATTTGCGCGAGTCGCTTTCGAACCACTT     50

BSNT_00367___     48 AGAAAATGAAGTCTGCC-AGCGTATTTGCAAGAAGATGCTGGCGAAGCAT     96
                     .||..||||.||.|||| || |.||||..||.|||.|.|.||||||||||
RBAM_002550__     51 GGAGCATGACGTGTGCCGAG-GGATTTATAAAAAGCTTCAGGCGAAGCAT     99

BSNT_00367___     97 TATGCAAATGAAGAGGAATTTGTAAAAGACTTAGATGATAATGAAATGTC    146
                     |||||||||||.|..||.|||||.|||||..||.|||||...||||||..
RBAM_002550__    100 TATGCAAATGAGGGCGAGTTTGTGAAAGATCTAAATGATTTGGAAATGGA    149

BSNT_00367___    147 TTTTTTGAACCATGTATTAGAAAAAGAAATTAAGTATGCCCAGAATGAAC    196
                     |....||||.||.||..|.|||||.|||||.||.|||||..||||.||.|
RBAM_002550__    150 TGCGCTGAATCAGGTGCTTGAAAAGGAAATCAAATATGCTGAGAACGAGC    199

BSNT_00367___    197 AGGATCAAAAACGGGCCAAGGAATTAAACGAGGTGTATGAATTACTGCTT    246
                     |||||.|.||.||..|.|.||||||.||.||.||.|||||..|.|||.||
RBAM_002550__    200 AGGATGAGAAGCGCACGATGGAATTGAATGAAGTATATGAGCTCCTGTTT    249

BSNT_00367___    247 TGA    249
                     |.|
RBAM_002550__    250 TAA    252


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