Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01249 and RBAM_002470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:55
# Commandline: needle
# -asequence dna-align/BSNT_01249___yfnB.1.9828.seq
# -bsequence dna-align/RBAM_002470___yfnB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01249___yfnB-RBAM_002470___yfnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01249___yfnB-RBAM_002470___yfnB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01249___yfnB
# 2: RBAM_002470___yfnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 744
# Identity: 331/744 (44.5%)
# Similarity: 331/744 (44.5%)
# Gaps: 309/744 (41.5%)
# Score: 1003.0
#
#
#=======================================
BSNT_01249___ 1 ATGAAACGATACCGCACTTTATTATTTGATGTAGATGATACCATCCTTGA 50
||||..|..|||||.||.||||||||||||.||||..||||..|.||.||
RBAM_002470__ 1 ATGAGTCATTACCGTACGTTATTATTTGATATAGACAATACGCTGCTGGA 50
BSNT_01249___ 51 TTTTCAAGCGGCAGAAGCTTTAGCCCTGCGTTTGCTGTTTGAAGATCAGA 100
||||...||..|||||.| || .||||.| ||| |
RBAM_002470__ 51 TTTTACCGCTTCAGAAAC----------CG-ATGCTCT-------TCA-A 81
BSNT_01249___ 101 ACATTCCTTTAA----CAAA--------TGAC-------ATGAAGGCGCA 131
|.|||..||.|| |||| |||| .||.|.||.|.
RBAM_002470__ 82 AAATTGTTTCAAGGTTCAAAGCTGGAGCTGACGGCAGAGGTGGAAGCCCG 131
BSNT_01249___ 132 GTATAAAACCAGC----AATCAAGGTCTCTGGAGAGCCTTTGAAGAAGGT 177
.||||| ||| ||||||||.||.||||..||.||||||||.||.
RBAM_002470__ 132 TTATAA----AGCGTTAAATCAAGGGCTGTGGAAGGCGTTTGAAGAGGGG 177
BSNT_01249___ 178 AAGATGACACGGGATGAAGTCGTAAACACACGTTTCTCCGCTTTGCTCAA 227
.|.|||||.||.||||||||.||.||.|||||.||..||..||||.|.||
RBAM_002470__ 178 GAAATGACCCGCGATGAAGTGGTGAATACACGGTTTGCCCTTTTGTTTAA 227
BSNT_01249___ 228 GGAGTACGTTTACGAAGCGGACGGCGCTTTGCTTGAGCAAAAA----TAC 273
.||.||||....||||||.||||||| ||| |||..||..| |||
RBAM_002470__ 228 AGAATACGGCCTCGAAGCCGACGGCG---TGC-TGATGAATCAGGCGTAC 273
BSNT_01249___ 274 CGCCGCTTTCTT-GAAGAAGGACATCAGCTTATTGACGGTGCATTTGATC 322
|||| ..|.||| ||||||||.||.|||.|.||.|||||.||.|.|||.|
RBAM_002470__ 274 CGCC-AATACTTAGAAGAAGGGCACCAGGTGATAGACGGAGCTTATGAGC 322
BSNT_01249___ 323 TCATCTCAAATCTGCAGCAACAG-------TTTGATTTGTACATCGTGAC 365
|.|| |.|| |.||.| || ||||||||.|||||||||||
RBAM_002470__ 323 TGAT-TGAA--CGGCTG----AGTCCTTTATTTGATTTATACATCGTGAC 365
BSNT_01249___ 366 AAACGGCGTGTCTAACA-CACAATATAAGCGTCTCCGTGATTCAGGATTA 414
.||||||||.|| ||.| |||||||||||||.||..|.||.||.||..|.
RBAM_002470__ 366 GAACGGCGTCTC-AAGATCACAATATAAGCGGCTGGGCGACTCCGGTCTG 414
BSNT_01249___ 415 TTTCCATTCTTCAAGGACATTTTCGTTTCTGAAGACACAGGCTTCCAAAA 464
|.|||.||||| ||.||..|.||.||.|||||.|||||.||.||.|||||
RBAM_002470__ 415 TATCCGTTCTT-AAAGATGTGTTTGTATCTGAGGACACGGGTTTTCAAAA 463
BSNT_01249___ 465 GCCGATGAAGGAATATTTCGATTACGTATTTGAACGGATTCCTCAATTTT 514
||||||||
RBAM_002470__ 464 GCCGATGA------------------------------------------ 471
BSNT_01249___ 515 CAGCAGAGCACACATTAATCATTGGGGATTCACTGACTGCTGATATCAAA 564
RBAM_002470__ 471 -------------------------------------------------- 471
BSNT_01249___ 565 GGCGGACAGCTCGCCGGACTTGACACTTGTTGGATGAACCCTGACATGAA 614
RBAM_002470__ 471 -------------------------------------------------- 471
BSNT_01249___ 615 GCCGAATGTGCCAGAGATCATACCAACCTATGAGATTCGTAAGCTTGAAG 664
RBAM_002470__ 471 -------------------------------------------------- 471
BSNT_01249___ 665 AGCTATATCACATTTTGAATATCGAAAATACCGTCAGCTCCTAA 708
RBAM_002470__ 471 -------------------------------------------- 471
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