Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06138 and RBAM_002440
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:36
# Commandline: needle
# -asequence dna-align/BSNT_06138.1.9828.seq
# -bsequence dna-align/RBAM_002440___yxaC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06138-RBAM_002440___yxaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06138-RBAM_002440___yxaC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06138
# 2: RBAM_002440___yxaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 710
# Identity: 523/710 (73.7%)
# Similarity: 523/710 (73.7%)
# Gaps: 34/710 ( 4.8%)
# Score: 1872.0
#
#
#=======================================
BSNT_06138 1 ATGCAGCAAGCATGTATCGCGATCATTATAATTCTTTTAACAGTTGCCGC 50
.|||||||||||||||||||.|||.||||||||.|.||.||.|..|||||
RBAM_002440__ 1 GTGCAGCAAGCATGTATCGCAATCCTTATAATTTTGTTCACGGCCGCCGC 50
BSNT_06138 51 TTATTTAGCGATGGTCAAACTCTATAAGCGATTCCCGCTTCCATTTCTGA 100
.|||.|.||.|||||.|||.|.|||..|||.||.||...|||.|||||.|
RBAM_002440__ 51 CTATCTGGCTATGGTGAAATTATATGTGCGCTTTCCATATCCCTTTCTCA 100
BSNT_06138 101 TCCCTGTTCTGACAACGACCATTTTGATTGTAGC--GGCT--TTGATGAT 146
|.||.|||.||||.||.||.|||||.|||.|.|| .||| ||| |
RBAM_002440__ 101 TACCGGTTTTGACGACTACGATTTTCATTATCGCCGTGCTGCTTG----T 146
BSNT_06138 147 GTTTCATGTTTCCTATGAAGGCTATATGATCGGGGGGAAATGGATCAATT 196
.||||||.||||.|||.|||.||||||||||||.||..||||||||||||
RBAM_002440__ 147 TTTTCATATTTCGTATAAAGACTATATGATCGGCGGCCAATGGATCAATT 196
BSNT_06138 197 CTTTGCTTGGGCCGGCTGTCGTGGCACTGGCCTATCCGCTTTATAAACAA 246
|..||||.||.||.||.||.|||||..||||.||.|||||||||||.||.
RBAM_002440__ 197 CACTGCTCGGACCCGCCGTGGTGGCTTTGGCATACCCGCTTTATAAGCAG 246
BSNT_06138 247 TG--GCATATTATTGTCAAACAT-TGTGTTCCAATTCTAGGCGGCGTCCT 293
.| |..|.||| .||||..|| ||| ||||.||..|.||||||||..|
RBAM_002440__ 247 CGCCGGGTGTTA--ATCAAGTATATGT-TTCCGATCATCGGCGGCGTGTT 293
BSNT_06138 294 GGTCGGATTATGCATGGGAATGATCAGCGGGCTGATCTTCGCAGAAGC-A 342
||.|||.||||.|...||||||.|||||||.|||.|.||.|||| ||| .
RBAM_002440__ 294 GGCCGGTTTATTCTCCGGAATGGTCAGCGGCCTGCTATTTGCAG-AGCTG 342
BSNT_06138 343 TTCGGGATTGATCA---------TGATCTCTTATTATCCATTCTGCCAAA 383
||||| .|||| ||| |.||.||.|||.|.|||||
RBAM_002440__ 343 TTCGG----CATCAGCCGGAGTTTGA-----TTTTGTCAATTATCCCAAA 383
BSNT_06138 384 GTCGATCACAACCCCTGTCGCTATTCAGATCGCCGCCGGTCTTGGCGGCG 433
.||.||.||.||.||||||||.||.|||||.||..|||||.|.|||||.|
RBAM_002440__ 384 ATCAATTACGACGCCTGTCGCGATACAGATTGCGTCCGGTATCGGCGGTG 433
BSNT_06138 434 TCCCTTCCATGACAGTCGTATTTGTCATGATTGCGGGCTTTTCAGGCGTC 483
|||||||||||||||||||.||.||||||||.||.||.|||||.|||||.
RBAM_002440__ 434 TCCCTTCCATGACAGTCGTGTTCGTCATGATCGCAGGGTTTTCCGGCGTT 483
BSNT_06138 484 ATCCTCGGGCCGCTTTTCCTAAAATGGCTTCGCATACGCAGCTCCCTAGG 533
|||.|.||.|||||..|.||.||.|||.|.|||||.||||||||.||.||
RBAM_002440__ 484 ATCTTAGGACCGCTGCTTCTCAAGTGGATCCGCATCCGCAGCTCACTCGG 533
BSNT_06138 534 ACAAGGCATTGCATTAGGCAGCGCCTCCCATGCACTGGGCACCTCCAAAG 583
..||||.||||||||.||.|||||.||||||||.||.||||||||.||||
RBAM_002440__ 534 GAAAGGAATTGCATTCGGGAGCGCTTCCCATGCGCTCGGCACCTCAAAAG 583
BSNT_06138 584 CATTGGAATATGGAGAACTGGCCGTCTCCATGAGTTCCGTCTCCATGACG 633
||.||||.||.||||||.|..|.||||||||||||||.||.|||||||||
RBAM_002440__ 584 CAATGGAGTACGGAGAATTAACAGTCTCCATGAGTTCTGTTTCCATGACG 633
BSNT_06138 634 CTTTGTGCGGTGCTCGGCTCATTCTTCGGCCCGCTCGTCGTCTGGCTGTT 683
||.||.||.|||.|.||.||..||||||||||..||||.|..|||.||||
RBAM_002440__ 634 CTCTGCGCCGTGTTAGGGTCGGTCTTCGGCCCCGTCGTAGCATGGATGTT 683
BSNT_06138 684 TCATATTTAA 693
|||.||||||
RBAM_002440__ 684 TCAAATTTAA 693
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