Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06138 and RBAM_002440

See Amino acid alignment / Visit BSNT_06138 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:36
# Commandline: needle
#    -asequence dna-align/BSNT_06138.1.9828.seq
#    -bsequence dna-align/RBAM_002440___yxaC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06138-RBAM_002440___yxaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06138-RBAM_002440___yxaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06138
# 2: RBAM_002440___yxaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 710
# Identity:     523/710 (73.7%)
# Similarity:   523/710 (73.7%)
# Gaps:          34/710 ( 4.8%)
# Score: 1872.0
# 
#
#=======================================

BSNT_06138         1 ATGCAGCAAGCATGTATCGCGATCATTATAATTCTTTTAACAGTTGCCGC     50
                     .|||||||||||||||||||.|||.||||||||.|.||.||.|..|||||
RBAM_002440__      1 GTGCAGCAAGCATGTATCGCAATCCTTATAATTTTGTTCACGGCCGCCGC     50

BSNT_06138        51 TTATTTAGCGATGGTCAAACTCTATAAGCGATTCCCGCTTCCATTTCTGA    100
                     .|||.|.||.|||||.|||.|.|||..|||.||.||...|||.|||||.|
RBAM_002440__     51 CTATCTGGCTATGGTGAAATTATATGTGCGCTTTCCATATCCCTTTCTCA    100

BSNT_06138       101 TCCCTGTTCTGACAACGACCATTTTGATTGTAGC--GGCT--TTGATGAT    146
                     |.||.|||.||||.||.||.|||||.|||.|.||  .|||  |||    |
RBAM_002440__    101 TACCGGTTTTGACGACTACGATTTTCATTATCGCCGTGCTGCTTG----T    146

BSNT_06138       147 GTTTCATGTTTCCTATGAAGGCTATATGATCGGGGGGAAATGGATCAATT    196
                     .||||||.||||.|||.|||.||||||||||||.||..||||||||||||
RBAM_002440__    147 TTTTCATATTTCGTATAAAGACTATATGATCGGCGGCCAATGGATCAATT    196

BSNT_06138       197 CTTTGCTTGGGCCGGCTGTCGTGGCACTGGCCTATCCGCTTTATAAACAA    246
                     |..||||.||.||.||.||.|||||..||||.||.|||||||||||.||.
RBAM_002440__    197 CACTGCTCGGACCCGCCGTGGTGGCTTTGGCATACCCGCTTTATAAGCAG    246

BSNT_06138       247 TG--GCATATTATTGTCAAACAT-TGTGTTCCAATTCTAGGCGGCGTCCT    293
                     .|  |..|.|||  .||||..|| ||| ||||.||..|.||||||||..|
RBAM_002440__    247 CGCCGGGTGTTA--ATCAAGTATATGT-TTCCGATCATCGGCGGCGTGTT    293

BSNT_06138       294 GGTCGGATTATGCATGGGAATGATCAGCGGGCTGATCTTCGCAGAAGC-A    342
                     ||.|||.||||.|...||||||.|||||||.|||.|.||.|||| ||| .
RBAM_002440__    294 GGCCGGTTTATTCTCCGGAATGGTCAGCGGCCTGCTATTTGCAG-AGCTG    342

BSNT_06138       343 TTCGGGATTGATCA---------TGATCTCTTATTATCCATTCTGCCAAA    383
                     |||||    .||||         |||     |.||.||.|||.|.|||||
RBAM_002440__    343 TTCGG----CATCAGCCGGAGTTTGA-----TTTTGTCAATTATCCCAAA    383

BSNT_06138       384 GTCGATCACAACCCCTGTCGCTATTCAGATCGCCGCCGGTCTTGGCGGCG    433
                     .||.||.||.||.||||||||.||.|||||.||..|||||.|.|||||.|
RBAM_002440__    384 ATCAATTACGACGCCTGTCGCGATACAGATTGCGTCCGGTATCGGCGGTG    433

BSNT_06138       434 TCCCTTCCATGACAGTCGTATTTGTCATGATTGCGGGCTTTTCAGGCGTC    483
                     |||||||||||||||||||.||.||||||||.||.||.|||||.|||||.
RBAM_002440__    434 TCCCTTCCATGACAGTCGTGTTCGTCATGATCGCAGGGTTTTCCGGCGTT    483

BSNT_06138       484 ATCCTCGGGCCGCTTTTCCTAAAATGGCTTCGCATACGCAGCTCCCTAGG    533
                     |||.|.||.|||||..|.||.||.|||.|.|||||.||||||||.||.||
RBAM_002440__    484 ATCTTAGGACCGCTGCTTCTCAAGTGGATCCGCATCCGCAGCTCACTCGG    533

BSNT_06138       534 ACAAGGCATTGCATTAGGCAGCGCCTCCCATGCACTGGGCACCTCCAAAG    583
                     ..||||.||||||||.||.|||||.||||||||.||.||||||||.||||
RBAM_002440__    534 GAAAGGAATTGCATTCGGGAGCGCTTCCCATGCGCTCGGCACCTCAAAAG    583

BSNT_06138       584 CATTGGAATATGGAGAACTGGCCGTCTCCATGAGTTCCGTCTCCATGACG    633
                     ||.||||.||.||||||.|..|.||||||||||||||.||.|||||||||
RBAM_002440__    584 CAATGGAGTACGGAGAATTAACAGTCTCCATGAGTTCTGTTTCCATGACG    633

BSNT_06138       634 CTTTGTGCGGTGCTCGGCTCATTCTTCGGCCCGCTCGTCGTCTGGCTGTT    683
                     ||.||.||.|||.|.||.||..||||||||||..||||.|..|||.||||
RBAM_002440__    634 CTCTGCGCCGTGTTAGGGTCGGTCTTCGGCCCCGTCGTAGCATGGATGTT    683

BSNT_06138       684 TCATATTTAA    693
                     |||.||||||
RBAM_002440__    684 TCAAATTTAA    693


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