Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00348 and RBAM_002320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_00348___glmS.1.9828.seq
# -bsequence dna-align/RBAM_002320___glmS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00348___glmS-RBAM_002320___glmS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00348___glmS-RBAM_002320___glmS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00348___glmS
# 2: RBAM_002320___glmS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1808
# Identity: 1549/1808 (85.7%)
# Similarity: 1549/1808 (85.7%)
# Gaps: 10/1808 ( 0.6%)
# Score: 6668.0
#
#
#=======================================
BSNT_00348___ 1 ATGTGTGGAATCGTAGGTTATATCGGTCAGCTTGATGCGAAGGAAATTTT 50
|||||||||||.|||||||||||||||||||||||||||||.||.|||||
RBAM_002320__ 1 ATGTGTGGAATTGTAGGTTATATCGGTCAGCTTGATGCGAAAGAGATTTT 50
BSNT_00348___ 51 ATTAAAAGGGTTAGAGAAGCTTGAGTATCGCGGTTATGACTCTGCTGGTA 100
.||||||||.|||||||||||||||||.|||||.|||||||||||.||||
RBAM_002320__ 51 GTTAAAAGGATTAGAGAAGCTTGAGTACCGCGGCTATGACTCTGCAGGTA 100
BSNT_00348___ 101 TTGCTGTTGCCAACGAACAGGGAATCCATGTGTTCAAAGAAAAAGGACGC 150
|.|||||.||.||.||.|||||..|.|||||||.||||||||||||.|||
RBAM_002320__ 101 TCGCTGTGGCGAATGAGCAGGGCGTGCATGTGTACAAAGAAAAAGGCCGC 150
BSNT_00348___ 151 ATTGCAGATCTTCGTGAAGTTGTGGATGCCAAT--GTAGAGGCGAAAGCC 198
||.||.||.|||||||||||.|||||| ||.| ||.||..|..||||.
RBAM_002320__ 151 ATCGCCGACCTTCGTGAAGTGGTGGAT--CACTCGGTTGAATCTCAAGCG 198
BSNT_00348___ 199 GGAATTGGGCATACTCGCTGGGCTACACACGGCGAACCAAGCTATCTGAA 248
|||||.||.|||||.||||||||.||.||||||||||||||||..|||||
RBAM_002320__ 199 GGAATCGGCCATACACGCTGGGCGACTCACGGCGAACCAAGCTTCCTGAA 248
BSNT_00348___ 249 CGCTCACCCGCATCAAAGCGCACTGGGCCGCTTTACACTTGTTCATAACG 298
||||||||||||||||||||||||.||||||||||||||||||||.||||
RBAM_002320__ 249 CGCTCACCCGCATCAAAGCGCACTCGGCCGCTTTACACTTGTTCACAACG 298
BSNT_00348___ 299 GCGTGATCGAGAACTATGTTCAGCTGAAGCAAGAGTAT-TTGCAAGATGT 347
|.||||||||||||||||||||||||||||..||.||| ||| ||.|.||
RBAM_002320__ 299 GTGTGATCGAGAACTATGTTCAGCTGAAGCGCGAATATCTTG-AAAACGT 347
BSNT_00348___ 348 AGAGCTTAAAAGTGACACCGATACAGAAGTAGTCGTTCAAGTAATCGAGC 397
.||.||.|||||.||.||.||.||.|||||||||||||||.|.|||||||
RBAM_002320__ 348 TGAACTGAAAAGCGATACGGACACTGAAGTAGTCGTTCAAATGATCGAGC 397
BSNT_00348___ 398 AATTCGTCAATGGAGGACTTGAG-ACAGAAGAAGCGTTCCGTAAAACACT 446
||||.||....|||||.||| || |||||||||||||||||.||||||||
RBAM_002320__ 398 AATTTGTGGCGGGAGGTCTT-AGCACAGAAGAAGCGTTCCGCAAAACACT 446
BSNT_00348___ 447 TACACTGTTAAAAGGCTCTTATGCAATTGCTTTATTCGATAACGACAACA 496
.||.|||||||||||||||||.||||||||.|||||.||....||.||||
RBAM_002320__ 447 GACTCTGTTAAAAGGCTCTTACGCAATTGCATTATTTGACGGTGAAAACA 496
BSNT_00348___ 497 GAGAAACGATTTTTGTAGCGAAAAACAAAAGCCCTCTATTAGTAGGTCTT 546
.|||.||.||||..||.||.|||||||||||||||||.|||.|.||.|||
RBAM_002320__ 497 CAGACACCATTTACGTTGCAAAAAACAAAAGCCCTCTGTTAATCGGCCTT 546
BSNT_00348___ 547 GGAGATACATTCAACGTCGTAGCATCTGATGCAATGGCGATGCTTCAAGT 596
||||||||.||.||||||||.||.|||||.||.|||||.|||||||||||
RBAM_002320__ 547 GGAGATACGTTTAACGTCGTGGCGTCTGACGCGATGGCTATGCTTCAAGT 596
BSNT_00348___ 597 AACCAACGAATATGTTGAGCTGATGGATAAAGAAATGGTTATCGTCACTG 646
|||.||.|||||.||||||||..||||.|||||||||||.|||||.||..
RBAM_002320__ 597 AACGAATGAATACGTTGAGCTTTTGGACAAAGAAATGGTGATCGTGACAA 646
BSNT_00348___ 647 ATGACCAAGTTGTCATCAAAAACCTTGATGGTGACGTGATTACACGTGCG 696
|.|||.|||..||.||.|||||||||||.|||||.||.||.|||||||||
RBAM_002320__ 647 AAGACGAAGCCGTGATTAAAAACCTTGACGGTGAAGTCATGACACGTGCG 696
BSNT_00348___ 697 TCTTATATTGCTGAGCTTGATGCCAGTGATATCGAAAAAGGCACGTACCC 746
||||||||.|||||||||||.|||||||||||||||||||||||.|||||
RBAM_002320__ 697 TCTTATATCGCTGAGCTTGACGCCAGTGATATCGAAAAAGGCACATACCC 746
BSNT_00348___ 747 TCACTACATGTTGAAAGAAACGGATGAGCAGCCTGTTGTTATGCGCAAAA 796
||||||||||||.||||||||||||||||||||..|||||||||||||||
RBAM_002320__ 747 TCACTACATGTTAAAAGAAACGGATGAGCAGCCGCTTGTTATGCGCAAAA 796
BSNT_00348___ 797 TCATCCAAACGTATCAAGATGAAAACGGCAAGCTGTCTGTGCCTGGTGAT 846
||||||||||||||||.||.||||||||||..|||.|.|||.|.||.|||
RBAM_002320__ 797 TCATCCAAACGTATCAGGACGAAAACGGCAGACTGGCCGTGGCCGGCGAT 846
BSNT_00348___ 847 ATCGCTGCCGCTGTAGCGGAAGCGGACCGCATCTATATCATTGGC-TGCG 895
.||||||.|||.||.|||||||||||||||||.|||||| .|||| ||||
RBAM_002320__ 847 GTCGCTGACGCCGTGGCGGAAGCGGACCGCATTTATATC-GTGGCTTGCG 895
BSNT_00348___ 896 GAACAAGCTACCATGCAGGACTTGTCGGTAAACAATATATTGAAATGTGG 945
||||.||||||||.||.||.||||||||.|||||||||||||||||||||
RBAM_002320__ 896 GAACGAGCTACCACGCTGGTCTTGTCGGGAAACAATATATTGAAATGTGG 945
BSNT_00348___ 946 GCAAACGTGCCGGTTGAAGTGCATGTAGCGAGTGAATTCTCCTACAACAT 995
||||||||.||||||||||||||||||||||||||||||||.||||||||
RBAM_002320__ 946 GCAAACGTACCGGTTGAAGTGCATGTAGCGAGTGAATTCTCTTACAACAT 995
BSNT_00348___ 996 GCCGCTTCTGTCTAAGAAACCGCTCTTCATTTTCCTTTCTCAAAGCGGAG 1045
||||||||||||||||||.||||||||.||.|||||||||||||||||||
RBAM_002320__ 996 GCCGCTTCTGTCTAAGAAGCCGCTCTTTATCTTCCTTTCTCAAAGCGGAG 1045
BSNT_00348___ 1046 AAACAGCAGACAGCCGCGCGGTTCTCGTTCAAGTCAAAGCGCTCGGACAC 1095
|||||||.|||||||||||.||.||.|||||||||||||||||.||.|||
RBAM_002320__ 1046 AAACAGCGGACAGCCGCGCCGTGCTTGTTCAAGTCAAAGCGCTGGGTCAC 1095
BSNT_00348___ 1096 AAAGCCCTGACAATCACAAACGTACCTGGATCAACGCTTTCTCGTGAAGC 1145
|||||.||||||||.||||||||.||.||||||||||||||.||||||||
RBAM_002320__ 1096 AAAGCGCTGACAATTACAAACGTTCCGGGATCAACGCTTTCCCGTGAAGC 1145
BSNT_00348___ 1146 TGACTATACATTGCTGCTTCATGCAGGCCCTGAGATCGCTGTTGCGTCAA 1195
.||.||.||||||||.||.||.|||||||||||||||||||||||.||||
RBAM_002320__ 1146 GGATTACACATTGCTTCTGCACGCAGGCCCTGAGATCGCTGTTGCATCAA 1195
BSNT_00348___ 1196 CAAAAGCATACACTGCACAAATTGCAGTTCTTGCGGTTCTTGCTTCTGTG 1245
|||||||.||.||.||.||.|||||.||.||.|||.|.|||||.||.||.
RBAM_002320__ 1196 CAAAAGCGTATACGGCTCAGATTGCCGTCCTCGCGATCCTTGCGTCCGTT 1245
BSNT_00348___ 1246 GCTGCTGACAAAAACGGCATCGATATCGGATTTGACCTCGTCAAAGAACT 1295
||.||.||....||||||.|.||||||||.|||||..|.|||||||||.|
RBAM_002320__ 1246 GCAGCAGAACGCAACGGCGTTGATATCGGTTTTGATTTAGTCAAAGAATT 1295
BSNT_00348___ 1296 CGCTATCGCTGCAAACGCAATGGAAGCTCTATGCGACCAGAAAGACGAAA 1345
.|.|||.||.||||||||.||||||||.||.|||||||||||.|||||||
RBAM_002320__ 1296 AGGTATTGCGGCAAACGCCATGGAAGCCCTCTGCGACCAGAAGGACGAAA 1345
BSNT_00348___ 1346 TGGAAATGATCGCCCGTGAATACCTGACTGTATCCAGAAACGCTTTCTTC 1395
|||||||||||||.|||||.|||||||||||.||.|||||||||||||||
RBAM_002320__ 1346 TGGAAATGATCGCGCGTGAGTACCTGACTGTTTCAAGAAACGCTTTCTTC 1395
BSNT_00348___ 1396 ATCGGACGTGGCCTTGACTACTTCGTATGTGTCGAAGGCGCACTGAAGCT 1445
|||||.||.||||||||||||||||||||||||||||||||.||||||||
RBAM_002320__ 1396 ATCGGCCGCGGCCTTGACTACTTCGTATGTGTCGAAGGCGCCCTGAAGCT 1445
BSNT_00348___ 1446 GAAAGAGATTTCTTACATCCAGGCAGAAGGTTTTGCCGGCGGTGAGCTAA 1495
||||||||||||||||||||||||.|||||.||.||||||||.|||||.|
RBAM_002320__ 1446 GAAAGAGATTTCTTACATCCAGGCGGAAGGCTTCGCCGGCGGCGAGCTGA 1495
BSNT_00348___ 1496 AGCACGGAACGATTGCCTTGATCGAACAAGGAACACCAGTATTCGCACTG 1545
||||.|||||.||.||..||||.|||.||||||||||.||.||.||.|||
RBAM_002320__ 1496 AGCATGGAACAATCGCTCTGATTGAAGAAGGAACACCGGTCTTTGCGCTG 1545
BSNT_00348___ 1546 GCAACTCAAGAGCACGTAAACCTAAGCATCCGCGGAAACGTCAAAGAAGT 1595
||.||.|||||.|||||.|||||.|||||||||||||||||.||.|||||
RBAM_002320__ 1546 GCGACACAAGAACACGTCAACCTGAGCATCCGCGGAAACGTGAAGGAAGT 1595
BSNT_00348___ 1596 TGCCGCTCGCGGAGCAAACACATGCATCATCTCACTGAAAGGCCTAGACG 1645
.||.||.|||||.||.|||||.|||||||||||.|||||||||.||||.|
RBAM_002320__ 1596 CGCAGCCCGCGGCGCCAACACTTGCATCATCTCGCTGAAAGGCTTAGAAG 1645
BSNT_00348___ 1646 ATGCGGATGACAGATTCGTACTGCCGGAAGTAAACCCAGCGCTTGCTCCG 1695
|.||.||.|||||||||.|.|||||||||||.|||||.||||||||||||
RBAM_002320__ 1646 ACGCAGACGACAGATTCATCCTGCCGGAAGTCAACCCTGCGCTTGCTCCG 1695
BSNT_00348___ 1696 TTGGTATCTGTTGTTCCATTGCAGCTGATCGCTTACTATGCTGCACTGCA 1745
.|||||||||||||.|||||||||||||||||||||||.|||||||||||
RBAM_002320__ 1696 CTGGTATCTGTTGTGCCATTGCAGCTGATCGCTTACTACGCTGCACTGCA 1745
BSNT_00348___ 1746 TCGCGGCTGTGATGTGGATAAACCTCGTAACCTTGCGAAGAGTGTTACTG 1795
.|||||||||||.||.||||||||.||.|||||||||||||||||.||||
RBAM_002320__ 1746 CCGCGGCTGTGACGTTGATAAACCGCGCAACCTTGCGAAGAGTGTGACTG 1795
BSNT_00348___ 1796 TGGAGTAA 1803
||||.||.
RBAM_002320__ 1796 TGGAATAG 1803
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