Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00345 and RBAM_002290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_00345___ybbR.1.9828.seq
# -bsequence dna-align/RBAM_002290___ybbR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00345___ybbR-RBAM_002290___ybbR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00345___ybbR-RBAM_002290___ybbR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00345___ybbR
# 2: RBAM_002290___ybbR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1472
# Identity: 1101/1472 (74.8%)
# Similarity: 1101/1472 (74.8%)
# Gaps: 49/1472 ( 3.3%)
# Score: 4040.5
#
#
#=======================================
BSNT_00345___ 1 ATGGATAAATTCTTAAACTACCGCTGGGCTGTGAAAATCATTGCTCTGCT 50
||||||||||||||||||.|||||||||||||.||.||||||||..||||
RBAM_002290__ 1 ATGGATAAATTCTTAAACAACCGCTGGGCTGTAAAGATCATTGCATTGCT 50
BSNT_00345___ 51 TTTCGCGCTCTTGCTTTATGTGGCGGTTAACAGCAACCAAGCACCGACTC 100
.||.|||||..|||||||.||.||||||||||.||||||.||.|||||||
RBAM_002290__ 51 CTTTGCGCTGCTGCTTTACGTTGCGGTTAACAACAACCAGGCGCCGACTC 100
BSNT_00345___ 101 CGAAAAAACCGGGTGAATCTTTCTTTCCGACATCAACAACTGATGAAGCA 150
|||||||.|||||.|||||.||.||||||||||||||.|||||.||.||.
RBAM_002290__ 101 CGAAAAAGCCGGGGGAATCCTTTTTTCCGACATCAACGACTGACGAGGCT 150
BSNT_00345___ 151 ACTCTGACTGATATTCCGGTTAAAGCGTATTATGATGATGAAAATTACGT 200
||.||.|||||||||||.||.|||||.||.||||||||.|..||.||.||
RBAM_002290__ 151 ACGCTTACTGATATTCCTGTAAAAGCATACTATGATGAAGCGAACTATGT 200
BSNT_00345___ 201 CGTAACGGGTGTTCCGCAAACGGTTAATGTCACGATAAAAGGCTCGACAA 250
.||.||.||.||.||.||.||.||.|||||||||||.|||||||||||||
RBAM_002290__ 201 TGTCACCGGCGTGCCCCAGACCGTAAATGTCACGATTAAAGGCTCGACAA 250
BSNT_00345___ 251 GCGCCGTGAAAAAGGCTCGGCAGACCAAAAACTTTGAAATATATGCTGAT 300
||||.|||||||||||..|.|||||.||.||.|||||.|||||.||.|||
RBAM_002290__ 251 GCGCGGTGAAAAAGGCGAGACAGACGAAGAATTTTGAGATATACGCCGAT 300
BSNT_00345___ 301 ATGGAACATTTGAAAACCGGCACACATAAGGTTGAGCTTAAGGCCAAAAA 350
|||.|..|..||||.|||||.||.||||||||.||..|.|||||.|||||
RBAM_002290__ 301 ATGAATAAGCTGAAGACCGGGACTCATAAGGTCGAATTGAAGGCGAAAAA 350
BSNT_00345___ 351 CGTGTCGGATGGGATGACAATCTCAATTAATCCGTCTGTTACGACAGTGA 400
|||.|||||.||..||||||||||.|||||.|||||.||.|||||.||.|
RBAM_002290__ 351 CGTATCGGACGGACTGACAATCTCCATTAACCCGTCAGTCACGACGGTTA 400
BSNT_00345___ 401 CCATTCAGGAACGGACGACCAAAAGTTTTCCCGTAGAAGTGGAGTACTAC 450
|.|||||||||...|||.|..|.|||||||||||.|||||.||.||||||
RBAM_002290__ 401 CGATTCAGGAAAAAACGGCTGAGAGTTTTCCCGTGGAAGTTGAATACTAC 450
BSNT_00345___ 451 AACAAAAGCAAGATGAAAAAAGGCTATTCTCCGGAGCAGCCGATTGTCAG 500
||.||||||||.||||||||.||.||..|.||..|||||||||||.||||
RBAM_002290__ 451 AATAAAAGCAAAATGAAAAAGGGATACACCCCTCAGCAGCCGATTATCAG 500
BSNT_00345___ 501 TCCGAAAAATGTGCAGATTACCGGATCGAAAAATGTCATCGATAATATTT 550
.||||||||.|||||||||||.||.|||||||||||.||.|||||.||||
RBAM_002290__ 501 CCCGAAAAACGTGCAGATTACAGGTTCGAAAAATGTGATTGATAACATTT 550
BSNT_00345___ 551 CTCTTGTAAAAGCTTCAGTGAATTTGGAAAACGCAGATGAAACGATTGAA 600
|.|||||.|||||.||.|||||..|.|||||.|||.||||.||.||||||
RBAM_002290__ 551 CACTTGTCAAAGCATCCGTGAACCTAGAAAATGCAAATGAGACCATTGAA 600
BSNT_00345___ 601 AAGGAAGCGAAAGTGACTGTCTATGATAAAGACGGAAACGCGCTTCCTGT 650
|||||||.|||.|||||.||||||||.||||||||.|||||.||||||||
RBAM_002290__ 601 AAGGAAGTGAAGGTGACCGTCTATGACAAAGACGGCAACGCACTTCCTGT 650
BSNT_00345___ 651 CGACGTGGAGCCCTCGGTCATCAAGATTACCGTTCCGGTGACAAGTCCGA 700
.||.||.||.||.||.|||||.||..|.||.|||||.||..|.|||||||
RBAM_002290__ 651 TGATGTTGAACCGTCAGTCATTAAAGTGACGGTTCCCGTAGCCAGTCCGA 700
BSNT_00345___ 701 GTAAAAAAGTGCCCTTTAAAATTGAACGGACAGGAAGCCTTCCTGACGGT 750
|.|||||..|.||.||.|||||.|||.|||..|||||.|||||.|||||.
RBAM_002290__ 701 GCAAAAAGCTTCCTTTCAAAATCGAAAGGAAGGGAAGTCTTCCGGACGGG 750
BSNT_00345___ 751 GTCAGCATAGCGAATATTGAATCCAGCCCCAGTGAAGTAACGGTTTACGG 800
||.|||.|.||||..|||||.||.|..||.|||||.||.|||||||||||
RBAM_002290__ 751 GTGAGCGTTGCGAGCATTGACTCGAATCCGAGTGAGGTGACGGTTTACGG 800
BSNT_00345___ 801 CTCACAGGATGTGTTGGATTCTCTTGAATTTATTGACGGCGTCAGC-CTA 849
|.|.|||||||||.|||||||.|||||||||||||||||||| |.| ||.
RBAM_002290__ 801 CCCGCAGGATGTGCTGGATTCACTTGAATTTATTGACGGCGT-ATCTCTT 849
BSNT_00345___ 850 GATTTAAGTAAAATTAACAAGGATTCCGATATCGAGGCAGATATTCTGCT 899
||||||.|.||||||.|.||.|||.||||||||.|.||.|||||.|.|||
RBAM_002290__ 850 GATTTAGGCAAAATTGATAAAGATACCGATATCAATGCCGATATCCCGCT 899
BSNT_00345___ 900 TCCTGACGGTGTCAAAAAAATCTCACCGTCAAAGGTGACTTTGCATATAG 949
||||.|.|||||||..||..|.||||||..|||..|.||..|.|||.|..
RBAM_002290__ 900 TCCTAAGGGTGTCACCAAGGTATCACCGGAAAAAATCACGCTTCATGTTA 949
BSNT_00345___ 950 AAGTCGATAGTGAAGCGGATCAGAAGTTCGAGAATGTCCCTATCAAGACT 999
||||.||.|||||||...|..||.|.||.||.||||||...||||||||.
RBAM_002290__ 950 AAGTGGACAGTGAAGACAAAAAGGATTTTGACAATGTCGGAATCAAGACG 999
BSNT_00345___ 1000 GTAGGGCTGAGCAGCTCACAAAACATTGAATATCTTGATCCTGAATCACA 1049
||.||.|||.|..|||||||..|.|||||.|.|||.|||||||||||.||
RBAM_002290__ 1000 GTCGGACTGGGAGGCTCACAGCAGATTGAGTTTCTCGATCCTGAATCGCA 1049
BSNT_00345___ 1050 AGCGATAGACGTAACGGCTAAAGGCTCTCCCGCGAATATAAAAAAACTGA 1099
.||||||.|..|.|||||.||||||||.|||||.||.||.||....||||
RBAM_002290__ 1050 GGCGATAAATATTACGGCCAAAGGCTCCCCCGCCAACATTAAGGCGCTGA 1099
BSNT_00345___ 1100 AAAAATCAGATATTGAATTGTATGTGAATGTTTCAGATTTAGAGGACGGG 1149
||||.||.||.||||||.||||||..|||||.||.||.||.||.|||||.
RBAM_002290__ 1100 AAAAGTCGGACATTGAACTGTATGCCAATGTCTCGGACTTGGATGACGGA 1149
BSNT_00345___ 1150 GAGCATAGCGTGAAGCTTGAAGTGAACGGGCCACAGAATGTAACCTGGTC 1199
|||||....||.|||||||||||.|||||.||.||.||.||.||.|||.|
RBAM_002290__ 1150 GAGCACTCTGTAAAGCTTGAAGTAAACGGCCCGCAAAACGTCACATGGGC 1199
BSNT_00345___ 1200 CTTGGGGCGGAAAA---AC-GCCAAAATCAAGCTGACGTCTAAGAAAAGC 1245
|.|| ..|||| || |..||.|||||||||||.||||||||||.|
RBAM_002290__ 1200 CCTG----TCAAAAGACACGGTTAAGATCAAGCTGACTTCTAAGAAAAAC 1245
BSNT_00345___ 1246 AATACATCAACGAATGATAACAGCAGC------AATACATCAGGGAACCA 1289
|..|..||||..||..||.||.||.|| .|| ||.||.||..|
RBAM_002290__ 1246 ACAAGTTCAAATAAAAATGACGGCGGCTCCGCTGAT---TCCGGCAATAA 1292
BSNT_00345___ 1290 GGATGACACA----GATAAACAAACAAATGATCAA-AAGAACAATCAGCA 1334
|.|.|.|||| ||.|..||.||||| || ||| ||.||.||.|.|.|
RBAM_002290__ 1293 GAACGGCACAAGCGGAGACGCAGACAAA-GA-CAAGAACAAGAACCGGGA 1340
BSNT_00345___ 1335 AGAAGATACAAAGAACACTGATAAAAACAACAACGATCA-AAACCAAGAC 1383
|||.| |||||| |||.|||||| ||...|||.|
RBAM_002290__ 1341 AGACG---------ACACTG---------ACAGCGATCAGAATAAAAGTC 1372
BSNT_00345___ 1384 GAAAATAAAGATCAAAACCAAGATCAGGATGAGGATGAATCCACTGCGAA 1433
||||..|.||||||||.|||||.||||||||.||.|.|||.|..||..|
RBAM_002290__ 1373 -AAAACCAGGATCAAAATCAAGACCAGGATGAAGACGGATCAAGCGCTGA 1421
BSNT_00345___ 1434 TTCACAATCCTCATCGGAATAA 1455
||| .||.|||.|.||||.|
RBAM_002290__ 1422 TTC---TTCTTCAACAGAATGA 1440
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