Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00342 and RBAM_002260

See Amino acid alignment / Visit BSNT_00342 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:07
# Commandline: needle
#    -asequence dna-align/BSNT_00342___sigW.1.9828.seq
#    -bsequence dna-align/RBAM_002260___sigW.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00342___sigW-RBAM_002260___sigW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00342___sigW-RBAM_002260___sigW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00342___sigW
# 2: RBAM_002260___sigW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 564
# Identity:     471/564 (83.5%)
# Similarity:   471/564 (83.5%)
# Gaps:           0/564 ( 0.0%)
# Score: 1983.0
# 
#
#=======================================

BSNT_00342___      1 ATGGAAATGATGATTAAAAAAAGAATTAAACAAGTCAAAAAAGGCGACCA     50
                     |||||||...||||||||||||||||.||.|||||||||||||||||.||
RBAM_002260__      1 ATGGAAAACCTGATTAAAAAAAGAATCAAGCAAGTCAAAAAAGGCGATCA     50

BSNT_00342___     51 GAATGCATTTGCGGACATCGTAGATATTTACAAAGATAAAATTTATCAGC    100
                     .|||||.|||||.||.|||||.||..||||.||||||||.|||||.||||
RBAM_002260__     51 AAATGCGTTTGCAGAAATCGTTGACCTTTATAAAGATAAGATTTACCAGC    100

BSNT_00342___    101 TTTGCTACCGTATGCTTGGCAATGTGCATGAGGCGGAGGATATTGCACAG    150
                     ||||||||||.|||||.||||||||.||.||.|||||.||||||||.|||
RBAM_002260__    101 TTTGCTACCGCATGCTCGGCAATGTTCACGAAGCGGAAGATATTGCGCAG    150

BSNT_00342___    151 GAAGCTTTCATCAGAGCGTACGTTAATATCGACAGTTTTGATATTAACCG    200
                     ||||||||.|||||||||||.||.||||||||||||||.|||||.|||.|
RBAM_002260__    151 GAAGCTTTTATCAGAGCGTATGTCAATATCGACAGTTTCGATATCAACAG    200

BSNT_00342___    201 GAAATTTTCAACTTGGCTTTATCGAATCGCGACCAATTTGACCATTGACC    250
                     .||.||||||||.||||||||..||||.||||||||..||||||||||||
RBAM_002260__    201 AAAGTTTTCAACGTGGCTTTACAGAATTGCGACCAACCTGACCATTGACC    250

BSNT_00342___    251 GCATTCGCAAAAAGAAGCCGGATTATTACCTCGATGCAGAGGTGGCTGGT    300
                     ||||.|||||.||.|||||.|||||.||.||.||.|||||.||.||.||.
RBAM_002260__    251 GCATCCGCAAGAAAAAGCCTGATTACTATCTGGACGCAGAAGTAGCGGGA    300

BSNT_00342___    301 ACGGAAGGCTTGACCATGTATTCTCAAATCGCCGCAGATGGTGTTTTGCC    350
                     .|.|||||..||||.||||||||.||.||||||||.||.||.|||.|.||
RBAM_002260__    301 GCAGAAGGGCTGACGATGTATTCGCAGATCGCCGCGGACGGGGTTCTCCC    350

BSNT_00342___    351 TGAAGATGCAGTTGTGTCGCTGGAGCTCTCAAACACGATACAGCAGAAAA    400
                     ||||||.||.||..||||..|||||||.||..||||.||.|||.|.||.|
RBAM_002260__    351 TGAAGACGCCGTATTGTCATTGGAGCTGTCGGACACAATTCAGAAAAAGA    400

BSNT_00342___    401 TTTTAAAGCTTCCTGACAAATACAGAACAGTCATCGTATTAAAGTATATT    450
                     ||||||||||.||||||||.||||||||.||.||.|||||||||||||||
RBAM_002260__    401 TTTTAAAGCTGCCTGACAAGTACAGAACGGTTATTGTATTAAAGTATATT    450

BSNT_00342___    451 GACGAACTCTCATTAATTGAAATCGGGGAGATTCTAAACATTCCTGTGGG    500
                     |||||||||||.|||||||||||||||||||||||.||.||.|||||.||
RBAM_002260__    451 GACGAACTCTCTTTAATTGAAATCGGGGAGATTCTGAATATCCCTGTCGG    500

BSNT_00342___    501 GACTGTGAAAACGCGGATTCACAGAGGCAGAGAGGCTCTTAGAAAACAAT    550
                     .||.||.||.||..||||.|||||||||||||||||||||||||||||||
RBAM_002260__    501 CACCGTCAAGACAAGGATACACAGAGGCAGAGAGGCTCTTAGAAAACAAT    550

BSNT_00342___    551 TAAGGGATCTTTAA    564
                     |.||||||||||||
RBAM_002260__    551 TGAGGGATCTTTAA    564


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