Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00319 and RBAM_002160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:06
# Commandline: needle
# -asequence dna-align/BSNT_00319___ybbE.1.9828.seq
# -bsequence dna-align/RBAM_002160___ybbE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00319___ybbE-RBAM_002160___ybbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00319___ybbE-RBAM_002160___ybbE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00319___ybbE
# 2: RBAM_002160___ybbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1377
# Identity: 946/1377 (68.7%)
# Similarity: 946/1377 (68.7%)
# Gaps: 144/1377 (10.5%)
# Score: 3158.5
#
#
#=======================================
BSNT_00319___ 1 GTGAAAACAAAGACA-CTGTTCATATTCA-----GTGCCATTTTAACCCT 44
.||||||||..|||| |.| .||||.||| || || |.|.|||
RBAM_002160__ 1 ATGAAAACACTGACAGCCG-CCATACTCACAATGGT--CA---TCAGCCT 44
BSNT_00319___ 45 ATCGATATTC-GCGCCAAATGAAACCTTCGCACAAACAGCAGACAACTTG 93
.|| |.||| ||..|| ||||||
RBAM_002160__ 45 CTC--TTTTCTGCCGCA------------GCACAA--------------- 65
BSNT_00319___ 94 GTTGAGCCGAAAACCATAAATGCAGAAACTGCACAATTCT-CGACGAAG- 141
|||||||..|| |||.|| ||||.| |||||.||
RBAM_002160__ 66 ----AGCCGAAGCCC---AATCCA----------AATTATACGACGCAGC 98
BSNT_00319___ 142 -AAGCTAAAGAAGGTAGATCAGATGATAGAACGGGATATTGCAGCAGGAT 190
|||||.|..|||||.|||||.|||||.|||...||.||.||||||||||
RBAM_002160__ 99 AAAGCTCAGAAAGGTTGATCAAATGATTGAAAAAGACATCGCAGCAGGAT 148
BSNT_00319___ 191 TTCCAGGCGCCGTTCTTGTGGTGGTGAAGGATGGACGCATCATAAAAAAA 240
|.||.||.|||||.||.||.||.||.|||||.|||||..|.||.|||||.
RBAM_002160__ 149 TCCCCGGAGCCGTCCTCGTCGTCGTAAAGGACGGACGGGTGATCAAAAAG 198
BSNT_00319___ 241 GAAGCATACGGCTACAGTAAAAAGTACGAAGGGTCAGAA----CTGCTGC 286
.||||||||||||||||.|||||.||.||.|| ||| ||..|..
RBAM_002160__ 199 AAAGCATACGGCTACAGCAAAAAATATGACGG----GAACACCCTTTTAT 244
BSNT_00319___ 287 GCCGTCCGGCCAAAATGAAAACCCGCACGATGTTTGACTTAGCCTCAAAT 336
.|||||||...|||||||||||....||.||||||||..||||.||.|||
RBAM_002160__ 245 CCCGTCCGAAAAAAATGAAAACATCAACCATGTTTGATCTAGCTTCCAAT 294
BSNT_00319___ 337 ACAAAAATGTACGCAACAAATTTTGTATTGCAGCGCTTAGTCAGCCAAGG 386
||||||||||||||..|.|||||||.|||.|||||..|.||||||||.||
RBAM_002160__ 295 ACAAAAATGTACGCGGCGAATTTTGCATTACAGCGACTCGTCAGCCAGGG 344
BSNT_00319___ 387 AAAACTTGACGTCTATGAAAAAGTTTCTGCATATTTGCCGGGTTTCAAGG 436
|||.|||||.||.|||.|||||||.||.||.||..|.||.|.||||||.|
RBAM_002160__ 345 AAAGCTTGATGTGTATCAAAAAGTCTCGGCTTACCTTCCTGATTTCAAAG 394
BSNT_00319___ 437 ATCAG----------CCGGGTGACCTCATAAAAGGAAAAGACAAGATACG 476
| ||| ||| ||..|||.|||||||...||.||
RBAM_002160__ 395 A-CAGAAAAAGCGATCCG---------ATTCAAGAAAAAGACCGCATTCG 434
BSNT_00319___ 477 TGTCATTGATGTCCTCCAGCACCAATCAGGGCTCCCATCAAGCTTTTACT 526
.|||||.|||||.||||||||.|||||.||.||.||..||||||||||.|
RBAM_002160__ 435 CGTCATCGATGTGCTCCAGCATCAATCCGGTCTGCCGGCAAGCTTTTATT 484
BSNT_00319___ 527 TTTA-CACGCCGGAAAAAGCCGGCAAGTACTATTCCCAAGAACGGGACAA 575
|.|| || ||||||.|..||.|||...|..|||||.|||||||||||.||
RBAM_002160__ 485 TCTATCA-GCCGGACACCGCAGGCCCTTTGTATTCACAAGAACGGGATAA 533
BSNT_00319___ 576 AACGATTGAATATTTGACGAAAATTCCGCTCGATTATCAAACCGGG-ACA 624
||||||....|.|.|.||..||||.|||||.|..|| ||||||||| |||
RBAM_002160__ 534 AACGATCCGTTTTCTCACTCAAATCCCGCTTGCATA-CAAACCGGGAACA 582
BSNT_00319___ 625 AAACACGTATACAGTGACATTGGATATATGCTACTTGGGTGTATTGTCGA 674
||||||||||||||.||.||.||.||.|||||.||.||.||.||..|.||
RBAM_002160__ 583 AAACACGTATACAGCGATATCGGTTACATGCTTCTCGGCTGCATCATTGA 632
BSNT_00319___ 675 AAAACTCACTGGCAAACCGCTTGATGTCTACACGGAGCAAGAGCTCTACA 724
|||..|.||.||.|||.|.|||||||.|||..||||.|||||.||.||||
RBAM_002160__ 633 AAACATAACCGGAAAAACCCTTGATGCCTATGCGGAACAAGAACTGTACA 682
BSNT_00319___ 725 AACCGCTCAGGCTGAAGCATACCTTGTACAATCCGCTGCAAAAGGGCTTT 774
|||||||.|..||||.|||.||..|||.|||||||||||||||.||.|||
RBAM_002160__ 683 AACCGCTGAAACTGACGCACACACTGTTCAATCCGCTGCAAAAAGGTTTT 732
BSNT_00319___ 775 AAACCGAAACAG--TTCGCAGCTACTGAACGAATGGGCAATACACGTGAC 822
||| ||||.|| |||||||||||||||||..|.|||||.|||||||||
RBAM_002160__ 733 AAA--GAAAAAGCATTCGCAGCTACTGAACGTTTAGGCAACACACGTGAC 780
BSNT_00319___ 823 GGCGTTATTCAATTCCCTAACATCCGCACAAACACGCTGCAAGGAGAGGT 872
||.||.||.||.||.|||.|||||.|.||..|.||||||||.||.||.||
RBAM_002160__ 781 GGAGTCATCCATTTTCCTCACATCAGGACGTATACGCTGCAGGGGGAAGT 830
BSNT_00319___ 873 GCATGACGAAAAAGCGTTTTACTCAATGGATGGCGTGTCTGGGCATGCCG 922
.||.||.||||||||.|||||||||||||..||.|||||.||.||.||||
RBAM_002160__ 831 TCACGATGAAAAAGCATTTTACTCAATGGGAGGGGTGTCCGGTCACGCCG 880
BSNT_00319___ 923 GATTGTTCTCAAATGCAGATGATATGGCCATACTGCTGCAAGTCATGTTA 972
|..||||.||.|..||.|||||.||||||.|.||.||.|||||||||.|.
RBAM_002160__ 881 GGCTGTTTTCCAGAGCTGATGACATGGCCGTCCTTCTTCAAGTCATGCTG 930
BSNT_00319___ 973 AACAAAG---GTTCATACCGAAACA--TTTCTTTATTTGATCAGAAAACA 1017
|||..|| ||| || ||||| |||||.|.||..||.|.|..||.
RBAM_002160__ 931 AACGGAGGCAGTT-AT----AAACACGTTTCTCTCTTCAATAAAAGGACG 975
BSNT_00319___ 1018 GCCGACCTGTTTACA------GCA-CCTTCAGCAACAGACCCGACATTCG 1060
|||||..||||.||| ||| ||| |.||.|||||.||||
RBAM_002160__ 976 GCCGATTTGTTCACAACGGCGGCATCCT-------CTGATCCGACTTTCG 1018
BSNT_00319___ 1061 CTCTTGGCTGGAGGCGGAACGGAAGTAAA----AGC------ATGGAATG 1100
||||.|||||| ||||| ||| ||| |||||.||
RBAM_002160__ 1019 CTCTCGGCTGG--------CGGAA--AAACGGCAGCCCGGATATGGAGTG 1058
BSNT_00319___ 1101 GATGTTTGGCCCTCATGCCAG-TGAAAATGCTTACGGGCATACCGGCTGG 1149
||||||.||||||.||||.|| || ..|.||.||.||.|||||.||.|||
RBAM_002160__ 1059 GATGTTCGGCCCTTATGCAAGCTG-GCAGGCATATGGCCATACAGGATGG 1107
BSNT_00319___ 1150 ACAGGGACAGTTACAATTATTGATCCAGCATACAATTTAGGCATCGCATT 1199
||.||.||..|.||.|||||||||||.||.||.||..|.||.||||||.|
RBAM_002160__ 1108 ACCGGCACCATCACGATTATTGATCCCGCTTATAAGCTGGGGATCGCACT 1157
BSNT_00319___ 1200 GTTAACAAATAAAAAGCATACACCAGTTATTGATCCGGAAGAAAATCCAA 1249
.||.||.||||||||||||.|.||.||..|...|||.|..|||||.||.|
RBAM_002160__ 1158 TTTGACCAATAAAAAGCATTCCCCCGTCGTCAGTCCCGGTGAAAACCCGA 1207
BSNT_00319___ 1250 ACGTCTTTGAGGGTGATCAATTTGCAACAGGCAGTTATGGAAGTGTCATA 1299
|.||.|||||.||.||||..|||.|.||.||.||.||.||..|.||||||
RBAM_002160__ 1208 ATGTTTTTGAAGGGGATCTTTTTCCGACCGGAAGCTACGGCCGCGTCATA 1257
BSNT_00319___ 1300 ACCGCGATTTATGAAGCGATGGAGTGA 1326
|...|||||||||||||.||.||.|||
RBAM_002160__ 1258 AAAACGATTTATGAAGCCATTGAATGA 1284
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