Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00317 and RBAM_002150
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:06
# Commandline: needle
# -asequence dna-align/BSNT_00317___ybbD.1.9828.seq
# -bsequence dna-align/RBAM_002150___ybbD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00317___ybbD-RBAM_002150___ybbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00317___ybbD-RBAM_002150___ybbD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00317___ybbD
# 2: RBAM_002150___ybbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2007
# Identity: 1414/2007 (70.5%)
# Similarity: 1414/2007 (70.5%)
# Gaps: 171/2007 ( 8.5%)
# Score: 4821.5
#
#
#=======================================
BSNT_00317___ 1 ATGAGACCTGTCTTTCCGCTTATCCTTTCAGCCGT-TCTCTTTCTTTCAT 49
||||.||.|||| ||| |||||.|| |..||.|..|||||
RBAM_002150__ 1 ATGAAACTTGTC---------ATC---TCAGCTGTATTACTGTTGTTCAT 38
BSNT_00317___ 50 GCT-TTTTCGGGGCCAGACAGACAGAAGCCTCTGCATCCAAACGTGCAAT 98
| |||||||..| ||||| |.|| ||
RBAM_002150__ 39 --TGTTTTCGGCAC-------------------GCATC---ATGT---AT 61
BSNT_00317___ 99 CGATGCCAATC---AGATT--GTCA-----------------AT--CGTA 124
||| |.||.| |.||| |||| || ||||
RBAM_002150__ 62 CGA--CAAAACCGGACATTCCGTCACAGGCGGAACAAGCGGTATCCCGTA 109
BSNT_00317___ 125 TGTCGTTAGATGAAAAACTCGGCCAGATGCTGATGCCTGATTTTAGAAAT 174
||.|.||||||||||||.|.||.||||||||.||||||||||||.|.|||
RBAM_002150__ 110 TGACATTAGATGAAAAATTAGGGCAGATGCTCATGCCTGATTTTCGCAAT 159
BSNT_00317___ 175 TGGCAAAAGGAAGGCG-AGTCCTCTCCGCAAGCCCTTACAGAAATGAATG 223
|||||||| .||||.| ||||.||.||..|.||.|||||..||||||||.
RBAM_002150__ 160 TGGCAAAA-AAAGGGGCAGTCATCACCTGAGGCTCTTACCCAAATGAATA 208
BSNT_00317___ 224 ATGAAGTCGCCA--GCCTCGTCAAGAAATATCAATTCGGAGGCATCATCC 271
|.||||||| || ||.|..|||| ||.||.|..|||||.|||.|.|||.
RBAM_002150__ 209 AAGAAGTCG-CAGGGCTTATTCAA-AAGTACCGGTTCGGCGGCGTTATCT 256
BSNT_00317___ 272 TTTTTGCAGAAAATGTAAAAACAACAAAACAAACTGTCCAACTGACAGAC 321
|.|||||||||||||||||||..||..|.|||||.||.|..||||||||.
RBAM_002150__ 257 TATTTGCAGAAAATGTAAAAAACACTGAGCAAACGGTACGCCTGACAGAT 306
BSNT_00317___ 322 GATTACCAAAAGGCAAGTCCAAAAATCCCGCTCATGCTGAGTATTGATCA 371
|..|..||||||||.||.||..|.||.|||||..|..|.||.||||||||
RBAM_002150__ 307 GCCTTTCAAAAGGCGAGCCCTGACATTCCGCTATTATTAAGCATTGATCA 356
BSNT_00317___ 372 GGAAGGCGGCATTGTAACGCGGTTAGGGGAGGGCACTAATTTCCCAGGGA 421
|||.||||||||.|||||..|..|.||.|||||||||.||||||||||.|
RBAM_002150__ 357 GGAGGGCGGCATCGTAACTAGACTTGGTGAGGGCACTCATTTCCCAGGCA 406
BSNT_00317___ 422 ATATGGCACTGGGCGCAGCCAGAAGCAGAATCA----ATGCGTATCAGAC 467
|||||||.||.||.||.||.|||| ||.|| |.||||..|||||
RBAM_002150__ 407 ATATGGCGCTCGGAGCCGCTAGAA----AAACAGCCTACGCGTCCCAGAC 452
BSNT_00317___ 468 CGGCAGCATCATCGGGAAAG-------AGCTCTCTGCCTTAGGCATCAAT 510
||||..|||.|||||||||| |||.||| |||||.|||
RBAM_002150__ 453 CGGCGCCATTATCGGGAAAGAACTGAAAGCACTC-------GGCATTAAT 495
BSNT_00317___ 511 ACAGATTTCAGC-CCTGTCGTGGACATTAACAATAATCCTAATAATCCTG 559
||..|.||| || ||.||..|.||.||.||.||||||||....||.||||
RBAM_002150__ 496 ACGAACTTC-GCTCCCGTTCTCGATATCAATAATAATCCCGGAAACCCTG 544
BSNT_00317___ 560 TAATCGGCGTACGGTCATTCAGCTCCAATCGAGAACTGACA---TCACGC 606
|.||||||||..||||.|||||.||..|.|||||.|||||| |||
RBAM_002150__ 545 TCATCGGCGTCAGGTCGTTCAGTTCAGACCGAGATCTGACAGCTTCA--- 591
BSNT_00317___ 607 CTCGGTTTATACACGATGAAAGGGTTGCAGC---GGCAGGATATCGCGTC 653
||||||.|...|.|.||||| ||.| |||| .|||||||.||||..|
RBAM_002150__ 592 CTCGGTCTTGCCTCAATGAA--GGCT-CAGCAAAAGCAGGATGTCGCTGC 638
BSNT_00317___ 654 TGCCCTCAAACATTTCCCGGGACATGGAGACACGGACGTTGACAGCCATT 703
.|||.|||||||||||||||||||.||.||||||||.||.||||||||.|
RBAM_002150__ 639 CGCCGTCAAACATTTCCCGGGACACGGCGACACGGATGTCGACAGCCACT 688
BSNT_00317___ 704 ATGGACTGCCGCTCGTTTCCCATGGCCAAGAACGGCTTCGTGAGGTCGAG 753
|.||.||.|||||.||..||||....||||||.||||.|||.||.|.||.
RBAM_002150__ 689 ACGGTCTTCCGCTTGTCACCCACAATCAAGAAAGGCTGCGTCAGATTGAA 738
BSNT_00317___ 754 CTTTATCCTTTTCAAAAAGCAATTGATGCTGGTGCTGATATGGTGATGAC 803
||||||||.||.|..||.||.|||.|.||.||.|||||||||.|.|||||
RBAM_002150__ 739 CTTTATCCGTTCCGGAAGGCCATTCAGGCCGGAGCTGATATGATCATGAC 788
BSNT_00317___ 804 AGCCCATGTTCAGTTTCCCGCCTTTGATGACACCACTTACAAAAGCAAAC 853
|||||||||.||.||||||||.|||||.||.||.||.||.||||||||.|
RBAM_002150__ 789 AGCCCATGTGCAATTTCCCGCGTTTGACGATACAACCTATAAAAGCAAGC 838
BSNT_00317___ 854 TCGATGGATCGGACATTTTGGTTCCAGCTACACTTTCAAAAAAAGTGATG 903
|.||.||.||.|||||..|.||.||.||.|||||.||.||||||||||||
RBAM_002150__ 839 TGGACGGTTCAGACATCCTCGTACCCGCCACACTCTCGAAAAAAGTGATG 888
BSNT_00317___ 904 ACAGGTCTTCTTCGTCAGGAAATGGGCTTTAATGGTGTGATCGTTACCGA 953
||...||||||.|||...||||||||.|||||.||.||.||||||||.||
RBAM_002150__ 889 ACTCATCTTCTCCGTGGAGAAATGGGATTTAACGGCGTCATCGTTACGGA 938
BSNT_00317___ 954 TGCACTCAATATGAAGGCAATCGCAGATCATTTCGGACAGGAAGAGGCTG 1003
||||.|.||||||||.||.||.||.|||||||||||.|||||||||||.|
RBAM_002150__ 939 TGCATTAAATATGAAAGCCATTGCCGATCATTTCGGCCAGGAAGAGGCGG 988
BSNT_00317___ 1004 TGGTCATGGCCGTAAGAGCTGGTGTCGATATTGCATTAATGCCAGCCTCA 1053
|.|||||||||||||.|||.||.|||||||||||..|.|||||.|||..|
RBAM_002150__ 989 TCGTCATGGCCGTAAAAGCAGGAGTCGATATTGCCCTGATGCCGGCCCAA 1038
BSNT_00317___ 1054 GTCACTTCATTGAAAGAAGAACAGAAA-----TTCGCACGTGTT-ATTCA 1097
||.||.||..||.| |||.|||| ||.||.||.||| ||||
RBAM_002150__ 1039 GTGACATCGCTGCA-----AACGGAAAACCGCTTTGCCCGGGTTCATTC- 1082
BSNT_00317___ 1098 AGCTTTGAAAGAAGCCGTGAAAAACGGGGATATTC--CTGAACAACAAAT 1145
.|||||.|||.|.||.||..||||.|||||.|||| ||| ||.|||||
RBAM_002150__ 1083 CGCTTTAAAAAAGGCGGTACAAAAAGGGGAAATTCCGCTG--CAGCAAAT 1130
BSNT_00317___ 1146 CAACAATTCAGTTGAAAGAATCATTTCCCTGAAAATAAAACGCGGCATGT 1195
.|||||.||||..|||.|.|||||||||||||||||||||||.||.||.|
RBAM_002150__ 1131 TAACAAATCAGCGGAACGCATCATTTCCCTGAAAATAAAACGAGGGATAT 1180
BSNT_00317___ 1196 ATCCAG-CGCGAAACAGCGACAGTACAAA--AGAAAAA----ATAGCCAA 1238
||||.| |.|||||.|| ||||| .|||||| ||.||.||
RBAM_002150__ 1181 ATCCCGCCCCGAAAAAG-------ACAAATCTGAAAAAGAAGATTGCAAA 1223
BSNT_00317___ 1239 AGCCAAAAAAATCGTAGGAAGCAAGCAGCACCTGAAAGCAGAGAAAAAAA 1288
|||.||.||||.|||.||.|||||..|.||.||||||||.||.|||.|||
RBAM_002150__ 1224 AGCAAAGAAAACCGTCGGCAGCAAAAATCATCTGAAAGCTGAAAAACAAA 1273
BSNT_00317___ 1289 TAGCTGAAAAAGCAGTAACTGTATTAAAAAATGAACAGCACACTTTGCCA 1338
|.||.||||...|.||.||.||.|||.||||..||.|.|.|||..|.|||
RBAM_002150__ 1274 TCGCGGAAAGGTCCGTCACCGTCTTACAAAACAAAAACCGCACGCTCCCA 1323
BSNT_00317___ 1339 TTCAAGCCTAAAAAAGGCAGCCGAATCTTAATTGTGGCACCTTACGAAGA 1388
|||||.||.|||||...||||||..|..|.||||..||.||.||.|||||
RBAM_002150__ 1324 TTCAAACCGAAAAAGAACAGCCGCGTTCTCATTGCCGCTCCATATGAAGA 1373
BSNT_00317___ 1389 ACAAACTGCTTCAATCGAACAAACCATTCACGATCTCATCAAGCGAAAGA 1438
.|||||.||.|||||.|||||||||||||...|.||||||||| ||||
RBAM_002150__ 1374 TCAAACAGCGTCAATGGAACAAACCATTCGGCAGCTCATCAAG---AAGA 1420
BSNT_00317___ 1439 AAATCAAACCCG---------TATCTGTCGACAAAATGAATTTTGCCAAC 1479
||| |||.||| .|||.|| ||||||||.||.|||.|.
RBAM_002150__ 1421 AAA--AAATCCGGCCGGTAACCATCAGT----AAAATGAACTTCGCCGAG 1464
BSNT_00317___ 1480 CAAGTATTTAAGGCCGAGCATGCAAAACAAGTAAAAA----AGGCTGATT 1525
|....||||.|.|..||.|| |||| |||.|.|.| |.|||||||
RBAM_002150__ 1465 CGCACATTTCATGATGAACA--CAAA--AAGCAGATATCTGACGCTGATT 1510
BSNT_00317___ 1526 ATATCATAACCGGCTCCTATGTCGTCAAAAATGATCCTGTCGTCAACGAC 1575
|..|.||.||.|||||.|||||.||.|||||||||||||||||.||||||
RBAM_002150__ 1511 ACGTGATTACAGGCTCATATGTTGTGAAAAATGATCCTGTCGTAAACGAC 1560
BSNT_00317___ 1576 GGTGTCATCGACGACACAATATCAGATTCAAGCAAATGGGCCACCGTGTT 1625
||.||.||.|||||..|..|..|||||.|..||||.|||.|.||.|..||
RBAM_002150__ 1561 GGCGTGATTGACGATTCCGTCACAGATCCCGGCAAGTGGACGACTGCATT 1610
BSNT_00317___ 1626 TCCGAGAGCTGTCATGAAAGCCGCACTGCAGCACAACAAACCATTTGTCT 1675
||||.|.||.||||||||||||||||....|.||.|.|||||.|||||..
RBAM_002150__ 1611 TCCGCGGGCCGTCATGAAAGCCGCACAATCGAACCAAAAACCCTTTGTGC 1660
BSNT_00317___ 1676 TAATGAGCCTGCGCAACCCCTATGACGCAGCCAATTTCGAAGAAACAAAG 1725
|.|||||||||||.||.||.||||||||.||.||.||.||||||.|..|.
RBAM_002150__ 1661 TGATGAGCCTGCGTAATCCATATGACGCTGCGAACTTTGAAGAAGCTGAA 1710
BSNT_00317___ 1726 GCACTGATTGCAGTCTATGGCTTTAAAGGATACGCAAATGGCCGTTATCT 1775
||.||.||.||||||||.||||||||||||||..||.|.||.|..|.|||
RBAM_002150__ 1711 GCCCTTATCGCAGTCTACGGCTTTAAAGGATATACAGACGGACAATTTCT 1760
BSNT_00317___ 1776 TCAACCTAATATTCCGGCCGGAGTGATG--GCGATATTCGGCCAGGCAAA 1823
.||.||.||.||||||||.||.|| || |||||||||||.|||.||||
RBAM_002150__ 1761 CCAGCCAAACATTCCGGCAGGCGT--TGAAGCGATATTCGGACAGACAAA 1808
BSNT_00317___ 1824 ACCTAAAGGCACACTTCCAGTTGACATTCCGTCAGTCACGAAACCAGGGA 1873
|||..||||||..||.||.|.|||||||||.||.||||||.|.|| ||||
RBAM_002150__ 1809 ACCGCAAGGCAGGCTGCCCGCTGACATTCCTTCCGTCACGCATCC-GGGA 1857
BSNT_00317___ 1874 AC-ACCCTTTACCCATTTGGCTACGGATTAAATATCAAAACGGGAAGACC 1922
|| ||.||.||.||.|.|||.|.|||..|.|||.|.||.||.||||.|||
RBAM_002150__ 1858 ACGACACTGTATCCTTATGGTTTCGGTATCAATCTGAAGACCGGAAAACC 1907
BSNT_00317___ 1923 GCTTTAA 1929
|||||||
RBAM_002150__ 1908 GCTTTAA 1914
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