Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00315 and RBAM_002140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:06
# Commandline: needle
# -asequence dna-align/BSNT_00315___ybbC.1.9828.seq
# -bsequence dna-align/RBAM_002140___ybbC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00315___ybbC-RBAM_002140___ybbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00315___ybbC-RBAM_002140___ybbC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00315___ybbC
# 2: RBAM_002140___ybbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1287
# Identity: 913/1287 (70.9%)
# Similarity: 913/1287 (70.9%)
# Gaps: 84/1287 ( 6.5%)
# Score: 3040.5
#
#
#=======================================
BSNT_00315___ 1 ATGAGAAAAACAATA----TTCGCTTTTCTGAC-----AGGGCTCATGA- 40
|||| |||.|||| | |.|||||.| ||.| ||...||||.|
RBAM_002140__ 1 ATGA-AAACACAA-ACGGCTGCGCTTCT-TGCCGGATTAGTCGTCATCAG 47
BSNT_00315___ 41 TGTTCGGAACGATAACCGCTGCCT---CTGCTTCACCCGATTCAAAGAA- 86
|| |.||.||.||.|.|| ||||||| |.|.||||
RBAM_002140__ 48 TG-------CTATGACGGCAGTCTCGGCTGCTTC-------TGACAGAAA 83
BSNT_00315___ 87 ---TCAAACGGCTAAAAAGCCTAAAG--TCCAGACCGGTATAGACACGCT 131
|||.||.||.||.||.|| ||| ||||.||.||.||.||| |||
RBAM_002140__ 84 CCTTCATACCGCCAAGAAACC--AAGCATCCAAACAGGCATCGAC-CGC- 129
BSNT_00315___ 132 CT--TGCCAGACTATAAAAAACAGCTCAAGGGAAAACGCATCGGACTGAT 179
|| ||..|||.||||||.|..|.||.|||||||||.|..||||.|||||
RBAM_002140__ 130 CTGCTGAAAGATTATAAACAGGAACTGAAGGGAAAAAGGGTCGGGCTGAT 179
BSNT_00315___ 180 CACCAATCCAACCGGAGTAAACGCATCTCTGAAAAGCAGTGTCGATATTC 229
||||||.||.|||||.||.|||...||..||||||||||.||.||..|.|
RBAM_002140__ 180 CACCAACCCGACCGGTGTGAACAATTCATTGAAAAGCAGCGTTGACGTGC 229
BSNT_00315___ 230 TTTACGAGAACCCAGATATCAAACTGACAGCTTTATTCGGCCCTGAACAC 279
|.||.|||...|||||.|||.|..||||.||.||||||||.||.||.|||
RBAM_002140__ 230 TGTATGAGGCACCAGACATCCACTTGACGGCATTATTCGGACCGGAGCAC 279
BSNT_00315___ 280 GGCGTCCGCGGTGACGCCCAGGCTGGAGACGAAGTAGGCTCTTACATTGA 329
||.||||||||.||.||.|||||.||||||.||||....||.||.||.||
RBAM_002140__ 280 GGTGTCCGCGGCGATGCTCAGGCCGGAGACAAAGTCACATCCTATATAGA 329
BSNT_00315___ 330 CGAAAAAACCGGGGTACCCGTATACAGCCTCTACGGAAAAACGAAAAAAC 379
|||||||||.|||.|.|||||.||||||||.|||||..||||||..||||
RBAM_002140__ 330 CGAAAAAACAGGGCTTCCCGTCTACAGCCTGTACGGGGAAACGAGGAAAC 379
BSNT_00315___ 380 CGACTCCAGAAATGCTGAAAAATGTCGATATTCTTATGTTTGACATTCAG 429
||||.||.||.|||||||||.||...|||.|.||.||.||.||.||||||
RBAM_002140__ 380 CGACGCCTGACATGCTGAAAGATACAGATGTACTGATTTTCGATATTCAG 429
BSNT_00315___ 430 GATGTCGGGACCCGTTTCTACACGTACATTTATACAATGGCATACGCAAT 479
||||||||.||.||.|.||||||.|||||||||||||||||.||.||.||
RBAM_002140__ 430 GATGTCGGAACGCGATACTACACCTACATTTATACAATGGCCTATGCCAT 479
BSNT_00315___ 480 GGAAGCCGCTAAAGAAAACGGCATTCC-ATTTATGGTGTTGGACCGTCCG 528
||||||.||.||||||||.|||||||| .||||| ||.||||||||.|||
RBAM_002140__ 480 GGAAGCGGCAAAAGAAAAAGGCATTCCTTTTTAT-GTATTGGACCGGCCG 528
BSNT_00315___ 529 AATCCTCAAGGAGG--GAATCATATTGAAGGACC-AATCTTAGAACCTGA 575
|||||.|||||.|| ||| ||...||.||.|| ..|||| |||||.||
RBAM_002140__ 529 AATCCGCAAGGCGGACGAA--ATCCAGACGGCCCGGTTCTT-GAACCGGA 575
BSNT_00315___ 576 CTACGCCTCATTTGTCGGATTGTATCCCATTCCATTGAAGCATGGGATGA 625
.|||||.||||||||||||.|||||||.||.||..|||||||.||.||||
RBAM_002140__ 576 TTACGCTTCATTTGTCGGACTGTATCCGATCCCGCTGAAGCACGGCATGA 625
BSNT_00315___ 626 CGATAGGCGAATTGGCTTTACTGTTCAACAAAGAATTTAGTATTAATGCC 675
||||.||.||..|.|||.|..|.|||||.|||||.|||..||||...|||
RBAM_002140__ 626 CGATCGGTGAGCTTGCTCTTTTATTCAATAAAGAGTTTCATATTGGCGCC 675
BSNT_00315___ 676 GATCTTACAGTGGTAAAAATGAAACACTGGAAGCGAAAAATG--GATTTT 723
||.||.||.||.|||||||||||.|.|||||||||.|..||| || ||
RBAM_002140__ 676 GACCTCACCGTCGTAAAAATGAAGCGCTGGAAGCGGACGATGACGA--TT 723
BSNT_00315___ 724 GACGATACCCGATTGCCTTTCGTCCTCCCTTCGCCTAACATGCCGACGGT 773
||.||||||.|..||||.||||||||||||||||||||.||.|||||...
RBAM_002140__ 724 GAAGATACCGGTCTGCCGTTCGTCCTCCCTTCGCCTAATATCCCGACCCC 773
BSNT_00315___ 774 GGAAAGCACATTTGTTTATCCTGCAACCGGGCTGATTGAAGGAACAAATA 823
|||.||||.|||.|..|||.|.||.||.||.||.||.|||||.|||||..
RBAM_002140__ 774 GGACAGCATATTCGCATATTCGGCGACAGGACTAATCGAAGGCACAAACG 823
BSNT_00315___ 824 TATCCGAAGGGCGAGGGACAACAAAGCCATTCGAATTGATCGGAGCTCCC 873
||||||||||..|.||.||.||||||||.||.|||.|||||||.||.||.
RBAM_002140__ 824 TATCCGAAGGAAGGGGCACGACAAAGCCGTTTGAACTGATCGGCGCGCCT 873
BSNT_00315___ 874 TTTATCAAAAGCACAGAACTTGAAGAAACATTAAACAGCCTCCATTTGCC 923
|.|||.||||||||.||.||.||||||....|.|||||.|||.|..|.||
RBAM_002140__ 874 TATATGAAAAGCACCGAGCTCGAAGAACGCCTGAACAGTCTCAAGCTTCC 923
BSNT_00315___ 924 GGGCGTTACATTTAGGGCAGCATCCTTCACACCGACGTTTTCTAAACATC 973
||||||.||.||.||.||.|||||.||.|..||.|..||.||.||.||.|
RBAM_002140__ 924 GGGCGTCACCTTCAGAGCCGCATCATTTATCCCCAGCTTCTCCAAGCACC 973
BSNT_00315___ 974 A-AGGAACGCTTTGCCACGGTGTGCAGCTCTATGTGACAGAAAGAGATAA 1022
| ||.|| |||.||||||||.||.||..||||.||.|||.|.|||.|.|.
RBAM_002140__ 974 AGAGCAA-GCTGTGCCACGGCGTACAAGTCTACGTAACAAACAGAAACAC 1022
BSNT_00315___ 1023 GTTTGAAGCCGTTAAAACGGGTCTTTCAGTCATT---AAAACCATACACG 1069
.||||||||.|..|||||.||.||.|| |||| ||||||||.||.|
RBAM_002140__ 1023 ATTTGAAGCGGCAAAAACAGGGCTCTC---CATTCTGAAAACCATGCATG 1069
BSNT_00315___ 1070 ATCTCTATCCTGAGGA-TTTTGAGTTCCTGTCAACAGGTTCATTCGATAA 1118
|..|.|||||..|.|| ||||.| |||.||.|.|||||.||.||.||.||
RBAM_002140__ 1070 ACTTATATCCGAATGACTTTTTA-TTCTTGCCGACAGGCTCTTTTGACAA 1118
BSNT_00315___ 1119 ACTGGCAGGCAACGGCTGGATCAGGACAAAAATTGAAAATGGAACTTCGA 1168
.|||...||.|||||||||.|..|.|.||||||.|||||.||..||||.|
RBAM_002140__ 1119 GCTGATCGGTAACGGCTGGGTACGCAAAAAAATAGAAAAAGGCGCTTCCA 1168
BSNT_00315___ 1169 TTGAGAACATCATAAACAGCTATGAAAAAACACTCC------AACAATTC 1212
||||..||||||....||..|||.| ||.|| |.|||||
RBAM_002140__ 1169 TTGAAGACATCACCGGCACATATCA------ACGCCGGCTGGACCAATT- 1211
BSNT_00315___ 1213 AGCAAAAC---AAGAAAAAAATATCTCATTTATTAG- 1245
|||||| |||||||.||||.|||||.||.| |
RBAM_002140__ 1212 --CAAAACTCTAAGAAAACAATACCTCATATACT-GA 1245
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