Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00315 and RBAM_002140

See Amino acid alignment / Visit BSNT_00315 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:06
# Commandline: needle
#    -asequence dna-align/BSNT_00315___ybbC.1.9828.seq
#    -bsequence dna-align/RBAM_002140___ybbC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00315___ybbC-RBAM_002140___ybbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00315___ybbC-RBAM_002140___ybbC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00315___ybbC
# 2: RBAM_002140___ybbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1287
# Identity:     913/1287 (70.9%)
# Similarity:   913/1287 (70.9%)
# Gaps:          84/1287 ( 6.5%)
# Score: 3040.5
# 
#
#=======================================

BSNT_00315___      1 ATGAGAAAAACAATA----TTCGCTTTTCTGAC-----AGGGCTCATGA-     40
                     |||| |||.|||| |    |.|||||.| ||.|     ||...||||.| 
RBAM_002140__      1 ATGA-AAACACAA-ACGGCTGCGCTTCT-TGCCGGATTAGTCGTCATCAG     47

BSNT_00315___     41 TGTTCGGAACGATAACCGCTGCCT---CTGCTTCACCCGATTCAAAGAA-     86
                     ||       |.||.||.||.|.||   |||||||       |.|.|||| 
RBAM_002140__     48 TG-------CTATGACGGCAGTCTCGGCTGCTTC-------TGACAGAAA     83

BSNT_00315___     87 ---TCAAACGGCTAAAAAGCCTAAAG--TCCAGACCGGTATAGACACGCT    131
                        |||.||.||.||.||.||  |||  ||||.||.||.||.||| ||| 
RBAM_002140__     84 CCTTCATACCGCCAAGAAACC--AAGCATCCAAACAGGCATCGAC-CGC-    129

BSNT_00315___    132 CT--TGCCAGACTATAAAAAACAGCTCAAGGGAAAACGCATCGGACTGAT    179
                     ||  ||..|||.||||||.|..|.||.|||||||||.|..||||.|||||
RBAM_002140__    130 CTGCTGAAAGATTATAAACAGGAACTGAAGGGAAAAAGGGTCGGGCTGAT    179

BSNT_00315___    180 CACCAATCCAACCGGAGTAAACGCATCTCTGAAAAGCAGTGTCGATATTC    229
                     ||||||.||.|||||.||.|||...||..||||||||||.||.||..|.|
RBAM_002140__    180 CACCAACCCGACCGGTGTGAACAATTCATTGAAAAGCAGCGTTGACGTGC    229

BSNT_00315___    230 TTTACGAGAACCCAGATATCAAACTGACAGCTTTATTCGGCCCTGAACAC    279
                     |.||.|||...|||||.|||.|..||||.||.||||||||.||.||.|||
RBAM_002140__    230 TGTATGAGGCACCAGACATCCACTTGACGGCATTATTCGGACCGGAGCAC    279

BSNT_00315___    280 GGCGTCCGCGGTGACGCCCAGGCTGGAGACGAAGTAGGCTCTTACATTGA    329
                     ||.||||||||.||.||.|||||.||||||.||||....||.||.||.||
RBAM_002140__    280 GGTGTCCGCGGCGATGCTCAGGCCGGAGACAAAGTCACATCCTATATAGA    329

BSNT_00315___    330 CGAAAAAACCGGGGTACCCGTATACAGCCTCTACGGAAAAACGAAAAAAC    379
                     |||||||||.|||.|.|||||.||||||||.|||||..||||||..||||
RBAM_002140__    330 CGAAAAAACAGGGCTTCCCGTCTACAGCCTGTACGGGGAAACGAGGAAAC    379

BSNT_00315___    380 CGACTCCAGAAATGCTGAAAAATGTCGATATTCTTATGTTTGACATTCAG    429
                     ||||.||.||.|||||||||.||...|||.|.||.||.||.||.||||||
RBAM_002140__    380 CGACGCCTGACATGCTGAAAGATACAGATGTACTGATTTTCGATATTCAG    429

BSNT_00315___    430 GATGTCGGGACCCGTTTCTACACGTACATTTATACAATGGCATACGCAAT    479
                     ||||||||.||.||.|.||||||.|||||||||||||||||.||.||.||
RBAM_002140__    430 GATGTCGGAACGCGATACTACACCTACATTTATACAATGGCCTATGCCAT    479

BSNT_00315___    480 GGAAGCCGCTAAAGAAAACGGCATTCC-ATTTATGGTGTTGGACCGTCCG    528
                     ||||||.||.||||||||.|||||||| .||||| ||.||||||||.|||
RBAM_002140__    480 GGAAGCGGCAAAAGAAAAAGGCATTCCTTTTTAT-GTATTGGACCGGCCG    528

BSNT_00315___    529 AATCCTCAAGGAGG--GAATCATATTGAAGGACC-AATCTTAGAACCTGA    575
                     |||||.|||||.||  |||  ||...||.||.|| ..|||| |||||.||
RBAM_002140__    529 AATCCGCAAGGCGGACGAA--ATCCAGACGGCCCGGTTCTT-GAACCGGA    575

BSNT_00315___    576 CTACGCCTCATTTGTCGGATTGTATCCCATTCCATTGAAGCATGGGATGA    625
                     .|||||.||||||||||||.|||||||.||.||..|||||||.||.||||
RBAM_002140__    576 TTACGCTTCATTTGTCGGACTGTATCCGATCCCGCTGAAGCACGGCATGA    625

BSNT_00315___    626 CGATAGGCGAATTGGCTTTACTGTTCAACAAAGAATTTAGTATTAATGCC    675
                     ||||.||.||..|.|||.|..|.|||||.|||||.|||..||||...|||
RBAM_002140__    626 CGATCGGTGAGCTTGCTCTTTTATTCAATAAAGAGTTTCATATTGGCGCC    675

BSNT_00315___    676 GATCTTACAGTGGTAAAAATGAAACACTGGAAGCGAAAAATG--GATTTT    723
                     ||.||.||.||.|||||||||||.|.|||||||||.|..|||  ||  ||
RBAM_002140__    676 GACCTCACCGTCGTAAAAATGAAGCGCTGGAAGCGGACGATGACGA--TT    723

BSNT_00315___    724 GACGATACCCGATTGCCTTTCGTCCTCCCTTCGCCTAACATGCCGACGGT    773
                     ||.||||||.|..||||.||||||||||||||||||||.||.|||||...
RBAM_002140__    724 GAAGATACCGGTCTGCCGTTCGTCCTCCCTTCGCCTAATATCCCGACCCC    773

BSNT_00315___    774 GGAAAGCACATTTGTTTATCCTGCAACCGGGCTGATTGAAGGAACAAATA    823
                     |||.||||.|||.|..|||.|.||.||.||.||.||.|||||.|||||..
RBAM_002140__    774 GGACAGCATATTCGCATATTCGGCGACAGGACTAATCGAAGGCACAAACG    823

BSNT_00315___    824 TATCCGAAGGGCGAGGGACAACAAAGCCATTCGAATTGATCGGAGCTCCC    873
                     ||||||||||..|.||.||.||||||||.||.|||.|||||||.||.||.
RBAM_002140__    824 TATCCGAAGGAAGGGGCACGACAAAGCCGTTTGAACTGATCGGCGCGCCT    873

BSNT_00315___    874 TTTATCAAAAGCACAGAACTTGAAGAAACATTAAACAGCCTCCATTTGCC    923
                     |.|||.||||||||.||.||.||||||....|.|||||.|||.|..|.||
RBAM_002140__    874 TATATGAAAAGCACCGAGCTCGAAGAACGCCTGAACAGTCTCAAGCTTCC    923

BSNT_00315___    924 GGGCGTTACATTTAGGGCAGCATCCTTCACACCGACGTTTTCTAAACATC    973
                     ||||||.||.||.||.||.|||||.||.|..||.|..||.||.||.||.|
RBAM_002140__    924 GGGCGTCACCTTCAGAGCCGCATCATTTATCCCCAGCTTCTCCAAGCACC    973

BSNT_00315___    974 A-AGGAACGCTTTGCCACGGTGTGCAGCTCTATGTGACAGAAAGAGATAA   1022
                     | ||.|| |||.||||||||.||.||..||||.||.|||.|.|||.|.|.
RBAM_002140__    974 AGAGCAA-GCTGTGCCACGGCGTACAAGTCTACGTAACAAACAGAAACAC   1022

BSNT_00315___   1023 GTTTGAAGCCGTTAAAACGGGTCTTTCAGTCATT---AAAACCATACACG   1069
                     .||||||||.|..|||||.||.||.||   ||||   ||||||||.||.|
RBAM_002140__   1023 ATTTGAAGCGGCAAAAACAGGGCTCTC---CATTCTGAAAACCATGCATG   1069

BSNT_00315___   1070 ATCTCTATCCTGAGGA-TTTTGAGTTCCTGTCAACAGGTTCATTCGATAA   1118
                     |..|.|||||..|.|| ||||.| |||.||.|.|||||.||.||.||.||
RBAM_002140__   1070 ACTTATATCCGAATGACTTTTTA-TTCTTGCCGACAGGCTCTTTTGACAA   1118

BSNT_00315___   1119 ACTGGCAGGCAACGGCTGGATCAGGACAAAAATTGAAAATGGAACTTCGA   1168
                     .|||...||.|||||||||.|..|.|.||||||.|||||.||..||||.|
RBAM_002140__   1119 GCTGATCGGTAACGGCTGGGTACGCAAAAAAATAGAAAAAGGCGCTTCCA   1168

BSNT_00315___   1169 TTGAGAACATCATAAACAGCTATGAAAAAACACTCC------AACAATTC   1212
                     ||||..||||||....||..|||.|      ||.||      |.||||| 
RBAM_002140__   1169 TTGAAGACATCACCGGCACATATCA------ACGCCGGCTGGACCAATT-   1211

BSNT_00315___   1213 AGCAAAAC---AAGAAAAAAATATCTCATTTATTAG-   1245
                       ||||||   |||||||.||||.|||||.||.| | 
RBAM_002140__   1212 --CAAAACTCTAAGAAAACAATACCTCATATACT-GA   1245


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