Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00313 and RBAM_002130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:06
# Commandline: needle
# -asequence dna-align/BSNT_00313___ybbB.1.9828.seq
# -bsequence dna-align/RBAM_002130___ybbB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00313___ybbB-RBAM_002130___ybbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00313___ybbB-RBAM_002130___ybbB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00313___ybbB
# 2: RBAM_002130___ybbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1748
# Identity: 1075/1748 (61.5%)
# Similarity: 1075/1748 (61.5%)
# Gaps: 310/1748 (17.7%)
# Score: 3152.0
#
#
#=======================================
BSNT_00313___ 1 GTGCAAAATGCAGTGATT-TATCAACCGGTACAAATTGAATATC------ 43
.||.||||..|| |.||| |.|||.|| .|||| |||||
RBAM_002130__ 1 ATGAAAAACACA-TTATTCTTTCAGCC------CATTG-ATATCATCTCC 42
BSNT_00313___ 44 -TAAAAAAGACAAGTGATCTCTTCTCAGAACAGCAATTAGCCGATTCATT 92
|||||||.|||...||.||..|.|||||.||.||..|..|.|||||...
RBAM_002130__ 43 GTAAAAAAAACAGCCGACCTTCTGTCAGAGCATCAGCTCACTGATTCCCC 92
BSNT_00313___ 93 CGTGCTGATTTTTCATTTAAAAGGAAACGGCTATATTTCGATCGGAACAA 142
|||..||||.||||||.|.|||||..|.||..|.|||...|||||||||.
RBAM_002130__ 93 CGTATTGATCTTTCATGTGAAAGGCGAGGGACAAATTGATATCGGAACAG 142
BSNT_00313___ 143 ACACCAATCCTTTGCAAAAAAAGACACTTTATGTTTGTCCGCCTAACGAG 192
|||.|..|||..||||.||..|.||.||.||..|.|||||...|.|.|||
RBAM_002130__ 143 ACAGCTTTCCGCTGCAGAAGGAAACGCTCTACATCTGTCCTTGTGATGAG 192
BSNT_00313___ 193 ACCT------TTG--GCTTTAC-----GCCAGCAGCCGATGGACATAT-- 227
||.| ||| .||.||| |.|.|||.|| ||....||||
RBAM_002130__ 193 ACATTCAATATTGCCCCTATACCGTCAGGCGGCATCC-ATTTGTATATCG 241
BSNT_00313___ 228 --AGA-TGCCTGTCTGATCAGGCTTCAAAGCTAT--ATC----AAGGAAG 268
||| |.|.|||.|..|| |||| ||| ||.||||
RBAM_002130__ 242 TCAGACTCCGTGTTTTCTC-----------CTATTCATCAGATAATGAAG 280
BSNT_00313___ 269 C---------------CGGCCAAGATATTTTCACACCGTGCACAGAATCG 303
| .||..||||.||.||| || ||
RBAM_002130__ 281 CGATGCTTCCGGATAATGGGGAAGACATCTTC----------CA----CG 316
BSNT_00313___ 304 GAATT-AGCCAAACTGAAGCTTATAAATGTTTCA-CATATCGAAAATCTT 351
||.|| ||| ||.|||| .|||.|||.|.||.| ||| |.||.||
RBAM_002130__ 317 GACTTCAGC--AAATGAA-TTTACAAACGGTTGATCAT-TTGACAA---- 358
BSNT_00313___ 352 GCCGTCCGGCTTCAAGAGCTTGCCGCACTATGGAATGAATCGTCTCAGCT 401
.||||||||| ||| .||
RBAM_002130__ 359 ----GCCGGCTTCA---------------------------GTC---ACT 374
BSNT_00313___ 402 TTCTCAGCTAAAATGTGGGAT---------------------TGAAGTAC 430
|||| .||||.|||.||| ||||.||.
RBAM_002130__ 375 TTCT----GAAAACGTGCGATCGGCGGATGCATTGCAGAAAATGAAATAT 420
BSNT_00313___ 431 AAAGC-------------CTGATTTATGACCTCTTTACTGCC-----AGT 462
|.||| |||||.||.|| |||||| |||| ||
RBAM_002130__ 421 ACAGCCGACTTTCAGCAGCTGATGTACGA--TCTTTA-TGCCGCAAAAG- 466
BSNT_00313___ 463 TTATCTGATCAAACGGATACACATTCAGCAATCGAAAAAACAAAACACTA 512
|||...||||||...||||..|..|.||.||||||.|.||||||||.|.
RBAM_002130__ 467 -TATGCCATCAAAATAATACGAAAGCGGCGATCGAACAGACAAAACAATT 515
BSNT_00313___ 513 TATCGAAACCCATGCCGATACAAAAATCACGCTTGCCCAGCTGTCGCAAA 562
.||..|.||.||..||||.||||||||||||||..|||||||..|.||.|
RBAM_002130__ 516 CATACATACTCAGTCCGACACAAAAATCACGCTCACCCAGCTCGCTCATA 565
BSNT_00313___ 563 TGGCAGGAATCAGTGCCAAACACTACAGTGAAAGCTTTAAAAA-----AT 607
||||.|||||||||.||||.||.||||||||||.||||||||| ||
RBAM_002130__ 566 TGGCGGGAATCAGTCCCAAGCATTACAGTGAAACCTTTAAAAAACTATAT 615
BSNT_00313___ 608 GGACAGGACAGAGCGTAACAGAATTTATTACGAAAACA--CGAATCACAA 655
||.|||||||||||.||||.|||.|| |.||| ||.||.||.|
RBAM_002130__ 616 -----GGGCAGAGCGTAACTGAATATATCAC--AGACATCCGCATAACCA 658
BSNT_00313___ 656 AGGC---AAAACTGCTCATGGCAAAATCAAACTGCAAATTGAAAGAAATC 702
|.|| ||||||| |||||.||..|||||||||||.||...||||||
RBAM_002130__ 659 ATGCGAAAAAACTG---ATGGCCAAGGCAAACTGCAAACTGCGGGAAATC 705
BSNT_00313___ 703 GCACACCAAACCGGTTATCAAGATGAATTTTATTTCAGCAGAATCTTTAA 752
||.||.||||.|||.||.|||||.|||||||||||||||.|.||||||||
RBAM_002130__ 706 GCTCATCAAATCGGCTACCAAGACGAATTTTATTTCAGCCGCATCTTTAA 755
BSNT_00313___ 753 AAAATATACAGGCTGTTCACCTACAAGCTATATGAAAAAACGCCGAAAGA 802
||||.||||.|||.|.||||||||||||||||||||||||.|.||.|..|
RBAM_002130__ 756 AAAACATACCGGCAGCTCACCTACAAGCTATATGAAAAAAAGGCGCACAA 805
BSNT_00313___ 803 AAATCGCCGCATACGGAAGGGGCACAATGGGCCATCTCATCCCCCTTCAC 852
||||.|||||.|||||||..|..||.|||||.|||||.||.||.||.||.
RBAM_002130__ 806 AAATGGCCGCGTACGGAAAAGAAACGATGGGGCATCTGATTCCTCTGCAT 855
BSNT_00313___ 853 CACATACCTTTTGCGGCCGCTCTGCATCCAAAATGGACGTCTTACTACTA 902
|||.|.||||..||.||.||.|||||.||.|||||||||.|.||.||.||
RBAM_002130__ 856 CACGTGCCTTACGCTGCGGCGCTGCACCCGAAATGGACGGCCTATTATTA 905
BSNT_00313___ 903 TCAGCATTATTCGACAGATATACCCGTCCAGCTCAGTGCATACCGGTTTA 952
..|.||.|..||..|.|||||.||.||.||.||.|||||.|||||.|.||
RBAM_002130__ 906 CAAACAATTCTCTTCCGATATTCCGGTTCACCTGAGTGCTTACCGCTATA 955
BSNT_00313___ 953 ATGAAAAGTGGGAAGAAAACCTGTACACGTTATCACAGGCAGAACCAGAT 1002
|||.|||.||||||||.||||||.|||||.|.||.||.||.|..||.||.
RBAM_002130__ 956 ATGCAAATTGGGAAGAGAACCTGCACACGCTGTCCCAAGCTGCCCCGGAC 1005
BSNT_00313___ 1003 GTGATTGTCAGCATGGATTCTATTTCTCCAGAAGAACAAGATCGCCTGAA 1052
.|.|||.||||..|.||||||.|...|..|||||||.||.|.||||||||
RBAM_002130__ 1006 ATCATTTTCAGTCTTGATTCTGTCAGTGAAGAAGAAAAACAGCGCCTGAA 1055
BSNT_00313___ 1053 TCGCATCGCAGAAGTCATGTACCTTCCTTCAGAAGAAAGCTGGAGAACCC 1102
|..||||.|.||.||..|.||||||||..|..||||.|..||||||..||
RBAM_002130__ 1056 TGACATCACTGACGTTTTTTACCTTCCGGCTCAAGAGAATTGGAGAGACC 1105
BSNT_00313___ 1103 ACTTTCTGCAAACTGCCTCATTTTTAAAGGAGGAGTCCGAAGCAGAAA-- 1150
|.|||||.|..||.|||.|||.|||.||.||.| |||||.||
RBAM_002130__ 1106 AGTTTCTTCGCACAGCCGCATATTTGAATGAAG-------AGCAGGAAGC 1148
BSNT_00313___ 1151 -----AGTGGCT---AGCGGATTATGACCAGCAGACAACAG--------- 1183
|.||||| ||| |||| ||| ||
RBAM_002130__ 1149 TCGGCACTGGCTTAAAGC---TTAT----------CAA-AGTCTCGCCCA 1184
BSNT_00313___ 1184 --CCGCCAAAAAAACACTTCAACACGTTCAAGGG---CTGCGTTTTCTCT 1228
|.||.|||.|..|.|||.|||||||.| || |.|||.| |||
RBAM_002130__ 1185 TTCAGCGAAAGATGCTCTTAAACACGTGC---GGCATCAGCGGT---TCT 1228
BSNT_00313___ 1229 T-TTTGAGGCTGC------ATAAGCAAAACTTCTATCTGGCACATAACCG 1271
| |||| |.| ||||..||||..|.||..|.||.||||||..
RBAM_002130__ 1229 TATTTG----TCCGTGTATATAAAGAAAATATGTACATCGCCCATAACAA 1274
BSNT_00313___ 1272 AAGTGTCCGCGAAGTTTTCTTTGGGGATTTAGGACTCAG-CTCGGCAACA 1320
.|||.|....||.||.|||||.||.|||||||| ||..| |||.||||.|
RBAM_002130__ 1275 CAGTATTGAGGATGTCTTCTTCGGTGATTTAGG-CTTTGCCTCCGCAAAA 1323
BSNT_00313___ 1321 ACGG------------CTGACACACCTTCAGAACAAGCGATTTCGTTAGA 1358
.||| ||||| |||.| ||||||.||.||
RBAM_002130__ 1324 CCGGAATCTTTTGCTCCTGAC---------GAAAA---GATTTCCTTGGA 1361
BSNT_00313___ 1359 AAATATCGCAAATTACCAAGCTGACTGTATGATGCTTTTTCTTTTTAAAG 1408
.|...|.||..|||.|||.||||||||.||.||||||||...||.|||||
RBAM_002130__ 1362 CATGCTGGCGGATTGCCAGGCTGACTGCATCATGCTTTTCACTTGTAAAG 1411
BSNT_00313___ 1409 AGCCGGAGACTATAGC----TTACTACCAGC-AATTACAGCAGACAGAAG 1453
|.|||||.|| || |||.|..|||| .||| ||||||||.|...
RBAM_002130__ 1412 AACCGGAAAC----GCTTCGTTATTTTCAGCGGATT-CAGCAGACCGGGA 1456
BSNT_00313___ 1454 CATGGCAAAACCTAAGCGCGGTACGGAATAA--GCGTGTT-----TATCT 1496
.||||||.|||||.||.||.||..|.||||| ||||||| ||||.
RBAM_002130__ 1457 TATGGCAGAACCTTAGAGCCGTCAGCAATAAACGCGTGTTTCCCATATCA 1506
BSNT_00313___ 1497 TCTATCCCTTGACCCGTGGAATGAATACTCAGCTTGCGGGCACGAACGCA 1546
|| |||||||||||.||||||.||..|..||||.||..|.||.|
RBAM_002130__ 1507 TC-------TGACCCGTGGATTGAATATTCTCCAAGCGGACATCAGCGGA 1549
BSNT_00313___ 1547 TCGTTC-AGCAAACTGTTTCTTTATTATCCGGAGATTGTCCATGA--- 1590
| |.|| ||||||...||||..|.|||||||.||||.|||||||.
RBAM_002130__ 1550 T-GATCGAGCAAAGCATTTCCATTTTATCCGAAGATCGTCCATGGTAA 1596
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