Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00304 and RBAM_002070
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:05
# Commandline: needle
# -asequence dna-align/BSNT_00304___ybaR.1.9828.seq
# -bsequence dna-align/RBAM_002070___ybaR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00304___ybaR-RBAM_002070___ybaR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00304___ybaR-RBAM_002070___ybaR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00304___ybaR
# 2: RBAM_002070___ybaR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1447
# Identity: 1011/1447 (69.9%)
# Similarity: 1011/1447 (69.9%)
# Gaps: 152/1447 (10.5%)
# Score: 3842.5
#
#
#=======================================
BSNT_00304___ 1 TTGAATGATAGTTTTACATTAAAACAGCAATGGTTCGGCAATATCCGAAA 50
RBAM_002070__ 0 -------------------------------------------------- 0
BSNT_00304___ 51 AGACATTCTTGCTGGCATTTTAGTTGCGTTAGCATTAATTCCTGAAGCGA 100
RBAM_002070__ 0 -------------------------------------------------- 0
BSNT_00304___ 101 TTGGCTTTTCTATTATAGCCGGTGTGGATCCGATGGTCGGTCTTTATGCG 150
||||||||.||||||||.
RBAM_002070__ 1 --------------------------------ATGGTCGGCCTTTATGCA 18
BSNT_00304___ 151 TCATTTTGTATAGCCATTATTATTTCTATTTTTGGCGGCAGACCTGGCAT 200
|||||||||||.||.||||||||||||||.||.|||||||||||.||.||
RBAM_002070__ 19 TCATTTTGTATCGCGATTATTATTTCTATCTTCGGCGGCAGACCGGGAAT 68
BSNT_00304___ 201 GATTTCAGCTGCGACAGGCTCAATGGCAGTCGTTATGGTGTCGCTGGTTG 250
|||||||||.||.||.||.||||||||.||.||.||||||.|..||||.|
RBAM_002070__ 69 GATTTCAGCCGCTACGGGTTCAATGGCGGTTGTCATGGTGACATTGGTGG 118
BSNT_00304___ 251 CTGATCATGGGCTTCAGTATTTATTTGCGGCTACGATTTTGACAGGTATT 300
|||||.|.|||||.||||||||.||||||||.||.|||||||||||||||
RBAM_002070__ 119 CTGATTACGGGCTGCAGTATTTGTTTGCGGCAACCATTTTGACAGGTATT 168
BSNT_00304___ 301 ATTCAGGTGATTTTAGGTATCAGTAAAATTGCAAGATTAATGAAATTCAT 350
|||||..|.|||.|.|||.||||||||||.||.|.|||.||||||||.||
RBAM_002070__ 169 ATTCAATTTATTCTTGGTGTCAGTAAAATAGCGAAATTGATGAAATTTAT 218
BSNT_00304___ 351 CCCGCGTTCTGTGATGATCGGGTTTGTGAATGCGCTGGCGATCCTTATCT 400
.||||||||.||.||||||||.|||||||||||..||||||||.|.||.|
RBAM_002070__ 219 TCCGCGTTCGGTCATGATCGGATTTGTGAATGCTTTGGCGATCTTGATTT 268
BSNT_00304___ 401 TCTCAGCGCAGCTTCCCCAGTTTGAAGGTGCTTCTTGGAGCATGTATGCG 450
|.||.||||||||.||.|||||..||||.|||||.|||..|||||||||.
RBAM_002070__ 269 TTTCTGCGCAGCTGCCGCAGTTCAAAGGAGCTTCATGGGTCATGTATGCC 318
BSNT_00304___ 451 ATGCTTGCCGGGTCGTTGGTTATTATTTATGTGCTGCCGAGATTTACGAC 500
|||||||||||.||..|||.|||.||.|||.|..||||||...|||||||
RBAM_002070__ 319 ATGCTTGCCGGATCACTGGCTATCATATATCTATTGCCGAAGGTTACGAC 368
BSNT_00304___ 501 TGCTGTTCCGTCTCCGCTTGTGGCGATTATTGTGATGACAATAATTGCGG 550
.|||||.|||||||||||.||||||||||||||.|||||.||.|||||||
RBAM_002070__ 369 GGCTGTGCCGTCTCCGCTGGTGGCGATTATTGTCATGACGATCATTGCGG 418
BSNT_00304___ 551 TCACTTTCCATGTGGATGTGCGGACGGTTGGTGATATGGGCAATATTTCT 600
|....|||||||.||||||.||.|||||.||||||||||||...||..|.
RBAM_002070__ 419 TGGTCTTCCATGCGGATGTCCGCACGGTCGGTGATATGGGCGGGATCACA 468
BSNT_00304___ 601 AGTTCATTGCCTCATTTCTTAATCCCTGATGTTCCGTTTACCTTTGAAAC 650
||||||.|.||.||||||||.||.||.||||||||||..||.|||||.||
RBAM_002070__ 469 AGTTCACTTCCGCATTTCTTGATACCGGATGTTCCGTGGACGTTTGAGAC 518
BSNT_00304___ 651 ACTGCAAATTATTTTTCCTTATTCAATTGCTTTAGCGTTTGTCGGGTTGC 700
|.|||...|||||||.||.|||||..|.||..|.||.||.|||||.||.|
RBAM_002070__ 519 ATTGCGGGTTATTTTCCCGTATTCTCTGGCGCTTGCTTTCGTCGGATTAC 568
BSNT_00304___ 701 TTGAATCTTTGCTGACAGCACAGATTATTGATGAGATGACGGATACGGAC 750
|.||.||.|||||||||||.|||||.||||||||.||||||||||||||.
RBAM_002070__ 569 TCGAGTCATTGCTGACAGCCCAGATCATTGATGAAATGACGGATACGGAT 618
BSNT_00304___ 751 AGTGATAAAAATAAAGAGAGCCGCGGACAGGGAATTGCGAATATCGTGAC 800
||||||||.||.|||||.|||||||||||.||.||.||.|||||.||||.
RBAM_002070__ 619 AGTGATAAGAACAAAGAAAGCCGCGGACAAGGCATCGCCAATATTGTGAA 668
BSNT_00304___ 801 TGGATTCTTTGGCGGAATGGCAGGCTGCGCTATGATCGGACAATCTGTCA 850
.|||||.||.||.||.|||||.||.|||||.||||||||.||.|||||||
RBAM_002070__ 669 CGGATTTTTCGGAGGCATGGCCGGATGCGCCATGATCGGCCAGTCTGTCA 718
BSNT_00304___ 851 TTAATACAAAAGCGGGCGGTCGCGGACGTTTGTCAGCATTTGTTGCCGGT 900
|||||||.|||||.|||||.|||||.||.||.||.||.|||...|||||.
RBAM_002070__ 719 TTAATACGAAAGCCGGCGGACGCGGCCGATTATCGGCTTTTACGGCCGGC 768
BSNT_00304___ 901 GCTTTTCTGATGTTTTTAATTGCGGTGTTAAGTCATGTCGTGGTGAAAAT 950
||.|||.|.||||||||||||||.||.|||||...|.||||.||||||||
RBAM_002070__ 769 GCGTTTTTAATGTTTTTAATTGCCGTATTAAGCGGTATCGTCGTGAAAAT 818
BSNT_00304___ 951 CCCAATGGCGGCGTTAGTAGCTGTAATGGTTATGGTGTCTGTCGGCACTT 1000
.||.|||||.|||.|.||.||.||.||||||||||||||..|||||||.|
RBAM_002070__ 819 TCCGATGGCTGCGCTGGTGGCCGTGATGGTTATGGTGTCCATCGGCACGT 868
BSNT_00304___ 1001 TTGATTGGTCTTCCTTAAAAGGTCTCAAAAAAGCGCCGCTCACGGACTCG 1050
|.||.|||||.||..|.||||||.|....||||||||.||.||.||.|||
RBAM_002070__ 869 TCGACTGGTCATCGATTAAAGGTTTGCGGAAAGCGCCCCTTACTGATTCG 918
BSNT_00304___ 1051 ATTGTCATGGTTGTGACTGTGGTTACGGTTGTTGTGACGGATGACTTATC 1100
||.||.||||||.|.||.||.||.|||||.||..||||..||||.|||||
RBAM_002070__ 919 ATCGTTATGGTTATTACCGTTGTGACGGTCGTCCTGACAAATGATTTATC 968
BSNT_00304___ 1101 TAAGGGTGTATTTGTCGGTGTTCTTTTAAGTGCCGTGTTCTTTGTGGCAA 1150
.||||||||.||.|..|||||.||..||||.||..|.||.|||..|||.|
RBAM_002070__ 969 AAAGGGTGTCTTCGCGGGTGTGCTGCTAAGCGCGATCTTTTTTACGGCGA 1018
BSNT_00304___ 1151 AAATCTCGAAGCTGAAAATCGTTTCTCATGCAGAGGATCAAAAGCTTAGA 1200
||||.||.||||||||.||.|..||.|||.|.||..|..||.|..|.|||
RBAM_002070__ 1019 AAATTTCTAAGCTGAAGATTGAGTCACATTCCGAACAGAAAGATGTCAGA 1068
BSNT_00304___ 1201 ACGTATCAAGTGAAGGGGCAAATCTTTTTTGCGTCAGTGACTGATCTTAC 1250
||.|||.|.||.|.|||.||.|||||||||||.||.|||.||||.||.|.
RBAM_002070__ 1069 ACTTATAAGGTAACGGGACAGATCTTTTTTGCTTCCGTGTCTGAGCTCAT 1118
BSNT_00304___ 1251 GAATG----CGTTTATATATCAAGAGGATATTG-AGCGGGTTGTGATTGA 1295
||||| ||||||| .||.||||.| || |.|||.||||.|||||
RBAM_002070__ 1119 GAATGCCATCGTTTAT-GATGAAGACG----TGAAACGGATTGTCATTGA 1163
BSNT_00304___ 1296 CTTAACTGAAGCTCACGTATGGGACGATTCTGGTGCGGCCGCACTTGATA 1345
.||.||.||.||.|||||.|||||.|||||.||.|||||.||.|||||.|
RBAM_002070__ 1164 TTTGACCGATGCCCACGTGTGGGATGATTCGGGAGCGGCGGCTCTTGAGA 1213
BSNT_00304___ 1346 AGATTGTTGCGAAGTTCAAGGAACAAGGCATTGAAGCTGAGTTAAAAGGT 1395
|.|||||.||.||.|..||.|||.|.||.|||||.|||||.|||||.||.
RBAM_002070__ 1214 AAATTGTCGCCAAATGTAAAGAATACGGAATTGAGGCTGAATTAAAGGGA 1263
BSNT_00304___ 1396 TTGAAT----AAAG-CGAGTAAATCTCTAATGAAACAGATGGCATAA 1437
||.||| |||| |||| .|.||||||||||.||||||||.
RBAM_002070__ 1264 TTAAATCAGAAAAGCCGAG-----ATTTAATGAAACAAATGGCATAG 1305
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