Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01789 and RBAM_002030
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:30
# Commandline: needle
# -asequence dna-align/BSNT_01789___glcP.1.9828.seq
# -bsequence dna-align/RBAM_002030___glcP1.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01789___glcP-RBAM_002030___glcP1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01789___glcP-RBAM_002030___glcP1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01789___glcP
# 2: RBAM_002030___glcP1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1478
# Identity: 712/1478 (48.2%)
# Similarity: 712/1478 (48.2%)
# Gaps: 520/1478 (35.2%)
# Score: 1240.0
#
#
#=======================================
BSNT_01789___ 1 ATGTTAAGAGGGACATAT-TTATTTGGATATGC----TTTCTT------- 38
|||.|.|.| ||...| |..|.||||||.|| ||||||
RBAM_002030__ 1 ATGATGAAA---ACTCGTCTGCTGTGGATAAGCTGTTTTTCTTATGGATC 47
BSNT_01789___ 39 ------TTTTACAGTAGGCATT-----ATCCATATATCAACAG--GGAGT 75
|||||||.|.|..||| |.||.| ||.| .||||
RBAM_002030__ 48 GATTGCTTTTACACTTGTTATTCTGGGAGCCGT------ACTGCCTGAGT 91
BSNT_01789___ 76 T--TGACACCATTTCTATTAGAGTCTTTTAACAAGACAACAG--ATG--- 118
| |.|||| |||| ||.||||..|.|||| |||
RBAM_002030__ 92 TACTCACAC-------ATTA-------TTCACAAAGCTACAGTAATGGCG 127
BSNT_01789___ 119 --ATATTTCGGTCATAATCTTCTTTCAGTTTACCGGATTTCTAAGCGGAG 166
.|||| || |.||||.||||||.|..||.|||||.|.|||||
RBAM_002030__ 128 GTGTATT--GG------TATTCTCTCAGTTCATGGGCTTTCTCATCGGAG 169
BSNT_01789___ 167 TATTAATCGCA--CCGTTAATGATTAA------------GAAATACAGTC 202
|||.|.||| ||.|..|||.|.|| .|||.|| |||
RBAM_002030__ 170 --TTATTGGCATGCCATACATGGTGAAAAAACTTGGGCGCAAAAAC-GTC 216
BSNT_01789___ 203 AT----TTTAG---GACACTTACTTTAGCTTTGACAATAATG-------- 237
.| |||.| |.|||| |.|.||||.||| ||||
RBAM_002030__ 217 GTTATCTTTGGCCTGGCACT--CATCAGCTGTGA----AATGTTCATCAC 260
BSNT_01789___ 238 ---CTTGCAG-------CGTTAAGCATCTTTTTTCTAAC-TAAGGATTGG 276
|.|||.| ||.| || |||||.|||| | |.||.||.|
RBAM_002030__ 261 CTTCCTGCCGCCCTGGCCGCT--GC-TCTTTCTTCT--CGTCAGCATCG- 304
BSNT_01789___ 277 TATTATATTATTGTAATGGCTTTTCTCTTAGGATATGGGGCAGGCACAT- 325
.|.|||||..|.| .|||| |||.|.| ||
RBAM_002030__ 305 --------------CAGGGCTTGGCGC--CGGAT-TGGTGGA-----ATC 332
BSNT_01789___ 326 -----TAGAAACGACAGTTGGTTCATTTGTTATTGCTAATTTCGAAAGTA 370
|||..|||| ||| |..|.|..||||.|...|||||..
RBAM_002030__ 333 CTGTGTAGGCACGA--------TCA-TCCTCACCGCTATTAAAGAAAGAC 373
BSNT_01789___ 371 ATGCAGAAAAAATGAGTAAGCTGGAAGTTCTCTTTGGATTAG--GCGCTT 418
|.||.|.....|||||.|||.|||||||...||..||||||| |||||.
RBAM_002030__ 374 AGGCTGTGGCCATGAGCAAGATGGAAGTGGCCTACGGATTAGGTGCGCTG 423
BSNT_01789___ 419 TATCTTTCCCATTATTAATTAATTC----------CTTCATAGATATCAA 458
| ||.|.|| || ||||.| ||||||
RBAM_002030__ 424 T-TCATGCC--------------TCTGCTCTCAGGCTTCCT---TATCAA 455
BSNT_01789___ 459 TAAC------TGG---------TTTTTACCGTATTACTGTATATTCACCT 493
.||| ||| |||||| ||||||..|| |||.||..|
RBAM_002030__ 456 CAACCACATGTGGACAATTGCTTTTTTA--GTATTAGGGT-TATCCAGTT 502
BSNT_01789___ 494 TTTTATTCGTCCTATTCGTAGGG----TGGTTAATTTTCTTGTCCAAGAA 539
||..| .||.||.|||.|.|| .|.|.|.|||
RBAM_002030__ 503 TTGCA---CTCTTAATCGCATGGAAGCAGATGAGTTT------------- 536
BSNT_01789___ 540 CCGAAAGTA-CGCTAAGAATGCCAACCAACAAGTGACCT-TTCCAGATGG 587
||..|||| .|.|.||..|..||.||...|||.|..|| |||| ||||
RBAM_002030__ 537 -CGGCAGTATTGATCAGCTTCTCATCCGCAAAGAGGTCTCTTCC-GATG- 583
BSNT_01789___ 588 AGGAGCATTTCAATACTTTATAGGAGATAGAAAAAAATCAAAGCA----- 632
|.||| |||||..||||||
RBAM_002030__ 584 ------------ACACT---------------AAAAAAGAAAGCACCGGT 606
BSNT_01789___ 633 --------------ATTAGGCTTTTTTGTATT---TT---------TTGC 656
||| |||.|| |||| || ||.|
RBAM_002030__ 607 TATCGGTCACACGGATT--GCTGTT---TATTGCCTTGGCGGGTGCTTAC 651
BSNT_01789___ 657 T--TTCCTATATGCTGGAATTGAAACAAATTTTGCCA----ACTTTTTA- 699
| |||.|.||.|..||.|.|||| .||.||| ||.|||||
RBAM_002030__ 652 TTCTTCTTTTACGGCGGCAGTGAA------GTTTCCATTGTACATTTTAT 695
BSNT_01789___ 700 -CCTTCAATC----ATGATAAA----------CCAA------GACAATG- 727
||.||.||| .|||.||| |||| |.|||.|
RBAM_002030__ 696 CCCCTCCATCTTCGCTGAGAAATGGGATATCCCCAACTCTTTGGCAACGA 745
BSNT_01789___ 728 -AACAAATTAGTCTTATA-AGTGTCTCCTTTTTCTGGGTAGGGATCATCA 775
||| ||| || |||||.| |||...|||||.||||
RBAM_002030__ 746 TAAC-----AGT----TACAGTGTAT--------TGGACGGGGATGATCA 778
BSNT_01789___ 776 TAGGAAGAATATTGATTGGTTTAGTA--AGTAGAAGGCTCGATTTTTC-C 822
|.||.||..||||.|..||....||| || .||.||| ||..|.|| |
RBAM_002030__ 779 TCGGTAGGTTATTAACAGGCCCGGTATCAG--AAAAGCT-GACATATCAC 825
BSNT_01789___ 823 AAATACCTCCTTTTTAGCTGTAGTTGTTTAATTGTTTTGTTGAT-TGCCT 871
...||.||||.|.|.| ||| |..|||..|.| ||.|.
RBAM_002030__ 826 CGTTATCTCCGTCTCA------------TAA--GCATTGGCGGTCTGGCA 861
BSNT_01789___ 872 TCTCTTA---TATAAG---TAACCCAATACTTCAATTGGGT--GGTACAT 913
.|.|||| |||.|| |||.|.||.||.| || ||| ||| |
RBAM_002030__ 862 GCACTTACCGTATTAGCATTAAGCAAAAACGT--AT--GGTTCGGT---T 904
BSNT_01789___ 914 T-----TTTGATT-------GGCCTAAGT--ATAGCGGGTATATTTCCCA 949
| ||||.|| ||.|| || ||.||.||.||.|||.|.|
RBAM_002030__ 905 TTGCCCTTTGCTTCTTTTTAGGGCT--GTTCATGGCAGGCATGTTTGCAA 952
BSNT_01789___ 950 TTGCTTTAACACTAGCATC---AATCATTATT------------CAGAAG 984
|.||..|| |.|||| |||||||.|| |||||
RBAM_002030__ 953 TAGCCCTA-----ATCATCACGAATCATTTTTATCCCGGAAAGACAGAA- 996
BSNT_01789___ 985 TACGTTGACGAAGTTACAAGTTTATTTATTGCCTCG--GCAA---GTTTC 1029
|| |..|||.|| |||| .|| |||| .||| |.||.
RBAM_002030__ 997 -------AC--AACTACCAG--TATT--CTG-CTCGCTTCAAATGGATTA 1032
BSNT_01789___ 1030 GGAGGAGCGATCATCTCTTTCTTA-----ATTGGATGGAGTTTAAATCAG 1074
|||| |.||| |||.|||..| .|.||.|||||.|||.|| |
RBAM_002030__ 1033 GGAG----GTTCA-CTCCTTCCGATCGCCGTCGGTTGGAGCTTAGAT--G 1075
BSNT_01789___ 1075 GATA--------------CGATCTTATTAACCATGGGAATATTTAC--AA 1108
.||| ||.||| |..|.||||| .|
RBAM_002030__ 1076 AATATCCCGCACAAACTGCGTTCT------------GGCTGTTTACTGCA 1113
BSNT_01789___ 1109 CTATGGCGGTCATTCTAGTAGGTATTTCTGTAAAGATTA--------GGA 1150
|||..|| ||.||.| |..|.|..||.|||..||.||| .||
RBAM_002030__ 1114 CTAATGC--TCCTTAT-GCTGCTGATTGTGTTCAGTTTAAGAATGCTCGA 1160
BSNT_01789___ 1151 GA-ACTAAAA-CAGAAGACCCTAT-TTC-ACTTGAAAA---CAAAGCATC 1193
|| |.||||| ||.| |.|| ||| ||.|.|.|| ||||| |
RBAM_002030__ 1161 GACAATAAAATCAAA-----CAATCTTCAACATCACAACAGCAAAG---C 1202
BSNT_01789___ 1194 AAAAACACGTGTAAATGAAAGATACTAA 1221
||||.|| .|||||
RBAM_002030__ 1203 AAAATCA-ATGTAA-------------- 1215
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