Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00264 and RBAM_001810

See Amino acid alignment / Visit BSNT_00264 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:04
# Commandline: needle
#    -asequence dna-align/BSNT_00264___gerD.1.9828.seq
#    -bsequence dna-align/RBAM_001810___gerD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00264___gerD-RBAM_001810___gerD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00264___gerD-RBAM_001810___gerD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00264___gerD
# 2: RBAM_001810___gerD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 565
# Identity:     467/565 (82.7%)
# Similarity:   467/565 (82.7%)
# Gaps:          14/565 ( 2.5%)
# Score: 1954.0
# 
#
#=======================================

BSNT_00264___      1 ATGTCAAAAGCCAAAACGCTATTGATGAGCTGTTTTTTGTTATTATCTGT     50
                     ||||||||||||||||||||||||||.|||||||||.|.|||||||||||
RBAM_001810__      1 ATGTCAAAAGCCAAAACGCTATTGATAAGCTGTTTTGTTTTATTATCTGT     50

BSNT_00264___     51 AACAGCTTGCGCTCCAAAAGACCAAGCAGCGGATATGGACTATGATCAGA    100
                     |||||||||.|||||||||||||||||||||||||||||.|||||.||||
RBAM_001810__     51 AACAGCTTGTGCTCCAAAAGACCAAGCAGCGGATATGGATTATGACCAGA    100

BSNT_00264___    101 CCAAAAAAATGGTTGTTGATATATTAAAAACTGATGATGGAAAGAAAGCT    150
                     |.||||||||||||||||||||||||||.||.|||||||||||.||.||.
RBAM_001810__    101 CTAAAAAAATGGTTGTTGATATATTAAAGACCGATGATGGAAAAAAGGCA    150

BSNT_00264___    151 ATTAAGGAATTATTAAATGATGATGCCATGAATGAAGCGCTGGTGATTGA    200
                     |||||||||.||||||||||||||||.||||||||.||..||||||||||
RBAM_001810__    151 ATTAAGGAAATATTAAATGATGATGCGATGAATGAGGCATTGGTGATTGA    200

BSNT_00264___    201 CCAAGATGCAATTAAAGGAACAATAGAAAAAACACTCACATCTAAAAAAG    250
                     .|||.||||..|||||||.||||||||.|||||.|||||.||||||||||
RBAM_001810__    201 TCAAAATGCCGTTAAAGGCACAATAGAGAAAACCCTCACCTCTAAAAAAG    250

BSNT_00264___    251 GTGAAGAATTTTGGAAAAACATCTTTGAAGACACTGATTTTGCTGAGGGC    300
                     |.|..||.||.|||||||.|||||||||||||.|..|.||.||.|||.||
RBAM_001810__    251 GGGCGGAGTTCTGGAAAACCATCTTTGAAGACTCAAAATTCGCCGAGAGC    300

BSNT_00264___    301 TTTGCCAAAACTCTTCAGACAGAGCATGAAAAAGTGATTAAAAAGCTGAT    350
                     |||||.||||||||||||.|.||||||||||||.|.||.|||||.|||||
RBAM_001810__    301 TTTGCAAAAACTCTTCAGCCCGAGCATGAAAAAATCATAAAAAAACTGAT    350

BSNT_00264___    351 GAAGGATCCAGATTACCAGAA------GATGCTGATGAGCGTTATGCAGG    394
                     |||.||.||.|||||.|||||      .||||.||      |.|||||||
RBAM_001810__    351 GAAAGACCCTGATTATCAGAAAAGTTTTATGCAGA------TCATGCAGG    394

BSNT_00264___    395 ATCCCGGCATGGATAAAAAGTACAGCCAGCTGGCAAAAAGCCAAGAATTC    444
                     |.|||||||||||||||||.|||....||||||..|||||||||.|.|||
RBAM_001810__    395 ACCCCGGCATGGATAAAAAATACTATGAGCTGGTGAAAAGCCAAAAGTTC    444

BSNT_00264___    445 CGCAGTTATTTAGAAGAGGTTATTAACGAAACACTTTCTAGTCCGCTTTA    494
                     ||||||||.||||||||.||.||||..||.||||||||.||.|||||||.
RBAM_001810__    445 CGCAGTTACTTAGAAGATGTAATTACAGAGACACTTTCCAGCCCGCTTTT    494

BSNT_00264___    495 CAAAAAGCAGTTCGAAGATGAGCTGAAAAAAGCAGC-AAAAGACACAGCC    543
                     |||||||||.|||||.|||||..|.||||||||||| ..||| |.|.|..
RBAM_001810__    495 CAAAAAGCAATTCGAGGATGAATTAAAAAAAGCAGCTTCAAG-CTCTGAA    543

BSNT_00264___    544 AAAGAAAGTGAATAA    558
                     ||||||||..|||||
RBAM_001810__    544 AAAGAAAGCCAATAA    558


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