Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00263 and RBAM_001800

See Amino acid alignment / Visit BSNT_00263 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:04
# Commandline: needle
#    -asequence dna-align/BSNT_00263___ybaL.1.9828.seq
#    -bsequence dna-align/RBAM_001800___ybaL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00263___ybaL-RBAM_001800___ybaL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00263___ybaL-RBAM_001800___ybaL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00263___ybaL
# 2: RBAM_001800___ybaL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1064
# Identity:     854/1064 (80.3%)
# Similarity:   854/1064 (80.3%)
# Gaps:          16/1064 ( 1.5%)
# Score: 3419.5
# 
#
#=======================================

BSNT_00263___      1 ATGATAAGAGAAGATGAAGTAAGAAAACTAGTCGGAGAAATGCGCGAACC     50
                     ||||||||||||||||||||||||||..||||||||.|.|||||||||||
RBAM_001800__      1 ATGATAAGAGAAGATGAAGTAAGAAATATAGTCGGAAACATGCGCGAACC     50

BSNT_00263___     51 TTTTCTTCAAAGACCTCTGGGAGAATTGGATGCCGTTAAGGAAATTAAAA    100
                     |||||||||.|||||.||||||||||||||||||.||||.|||.|.||.|
RBAM_001800__     51 TTTTCTTCATAGACCGCTGGGAGAATTGGATGCCATTAAAGAAGTAAAGA    100

BSNT_00263___    101 TAAAGCCTGAAAAACGGCATATCAGTGTAAAAGTCGCTCTTGCAAAAACA    150
                     |.|||||.||||||||||||.|||||||.|||.|.||..|.||||||||.
RBAM_001800__    101 TCAAGCCGGAAAAACGGCATGTCAGTGTGAAAATTGCATTGGCAAAAACG    150

BSNT_00263___    151 GGAACTGCAGAACAAATGCAGATTCAGCAAGAGATCGTAAACGTATTAAA    200
                     ||.||.||.|||||.|||....|||||||.||.||||||..|||..|.||
RBAM_001800__    151 GGGACGGCTGAACAGATGGGTGTTCAGCAGGAAATCGTATCCGTTCTGAA    200

BSNT_00263___    201 AGGGGCAGGAGCTGAGACAGTCGGCCTTCGATTTGAAGAGCTGCCTGAAG    250
                     ||..||.||.||.||.||.||.||.||.||.||||||||||||||.||||
RBAM_001800__    201 AGAAGCGGGTGCGGAAACTGTGGGACTGCGGTTTGAAGAGCTGCCGGAAG    250

BSNT_00263___    251 AAACGGTTGCTAAATTCCGGGCGCCGTCAGCTGAGAAAAAAACATTATTA    300
                     ||||..|.||.||||||.|...||||.|.|||||.|...||||..|..|.
RBAM_001800__    251 AAACATTGGCGAAATTCAGCCGGCCGGCTGCTGAAAGCGAAACCCTGCTG    300

BSNT_00263___    301 AATATGGATAAC--CCGCCAGTCTTTCTTGCCGTAGCAAGTGGAAAAGGC    348
                     |||| ||| |||  |||||.|||||||||||.||.|||||.|||||||||
RBAM_001800__    301 AATA-GGA-AACATCCGCCGGTCTTTCTTGCGGTGGCAAGCGGAAAAGGC    348

BSNT_00263___    349 GGCGTAGGCAAGTCAACTGTGTCCGTAAACCTAGCTATTTCTCTGGCTCG    398
                     ||.||.|||||.|||||.||.|||||.|||||.||.||||||||.||.||
RBAM_001800__    349 GGTGTCGGCAAATCAACGGTTTCCGTCAACCTGGCCATTTCTCTTGCGCG    398

BSNT_00263___    399 TCTAGGGAAAAAGGTTGGTTTAATTGATGCGGATATTTATGGGTTCAGTG    448
                     .||.||.|||||.||.||.||.||.||.||||||||.||.||.|||||.|
RBAM_001800__    399 GCTCGGAAAAAAAGTCGGCTTGATCGACGCGGATATATACGGATTCAGCG    448

BSNT_00263___    449 TGCCGGACATGATGGGTATCACTGTGCGTCCAACGATTGAAGGAGAGAAA    498
                     |||||||||||||||||||.||.||.|||||.||..|.||||||||.|||
RBAM_001800__    449 TGCCGGACATGATGGGTATTACAGTTCGTCCGACAGTAGAAGGAGAAAAA    498

BSNT_00263___    499 CTTCTTCCTGTTGAACGCTTTGGAGTAAAGGTCATGTCAATGGGCTTTTT    548
                     ||.||||||||.|||.|.||||||||||||||.|||||.|||||||||||
RBAM_001800__    499 CTGCTTCCTGTCGAAAGATTTGGAGTAAAGGTTATGTCGATGGGCTTTTT    548

BSNT_00263___    549 CGTAGAAGAAAATGCTCCGGTCGTATGGAGAGGACCGATGCTCGGCAAAA    598
                     |||.||||||||.||||||||.||.||||||||.||||||||.|||||.|
RBAM_001800__    549 CGTCGAAGAAAACGCTCCGGTTGTGTGGAGAGGGCCGATGCTGGGCAAGA    598

BSNT_00263___    599 TGCTGAATAACTTTTTCCATGAAGTAGAGTGGGGAGAAGTAGACTATATC    648
                     |||||||||||||.|||||||||||.||.||||||||.||.|||||||||
RBAM_001800__    599 TGCTGAATAACTTCTTCCATGAAGTTGACTGGGGAGAGGTTGACTATATC    648

BSNT_00263___    649 GTTCTTGATCTTCCGCCTGGTACAGGGGATGTTGCTCTCGATGTACATAC    698
                     |||||.|||||.|||||.||.||.||.|||||.||.|||||||||||.||
RBAM_001800__    649 GTTCTCGATCTGCCGCCCGGCACGGGTGATGTGGCGCTCGATGTACACAC    698

BSNT_00263___    699 AATGCTTCCGAGCTGCAAAGAAATCATCGTATCTACGCCGCATCCGACAG    748
                     .||||||||||||||||||||.||.||||||||.||||||||.||.||||
RBAM_001800__    699 GATGCTTCCGAGCTGCAAAGAGATTATCGTATCAACGCCGCACCCTACAG    748

BSNT_00263___    749 CTGCTTTTGTCGCGGCCAGAGCGGGCTCTATGGCGATTAAAACCGATCAT    798
                     |.||.|||||.|||||.||||||||.||||||||||||||.|||||||||
RBAM_001800__    749 CCGCATTTGTAGCGGCGAGAGCGGGTTCTATGGCGATTAAGACCGATCAT    798

BSNT_00263___    799 GAGGTCGTGGGGGTCATAGAGAACATGGCTTATTATGAAAGTGCAAAGAC    848
                     ||.||.||.||||||||.||.||.||||||||.||||||||||||||.||
RBAM_001800__    799 GAAGTTGTAGGGGTCATTGAAAATATGGCTTACTATGAAAGTGCAAAAAC    848

BSNT_00263___    849 AGGGGAAAGAGAATATGTCTTTGGAAAAGGCGGAGGAGATAAACTGGCTG    898
                     .||.||.|||||||||||.||.||..|||||||.||||||||.||.||.|
RBAM_001800__    849 CGGCGAGAGAGAATATGTGTTCGGTCAAGGCGGGGGAGATAAGCTTGCGG    898

BSNT_00263___    899 AGGAACTAAATGTGCCTTTGCTCGGCAGAATCCCATTGAAACAGCCAGAT    948
                     |||||.|..|.|||||..||||.||||||||.||.||.||||||||.|||
RBAM_001800__    899 AGGAATTGCAAGTGCCGCTGCTTGGCAGAATTCCTTTAAAACAGCCTGAT    948

BSNT_00263___    949 TGGGATAAGGACCAATTTGCTCCGTCTGTTTACGACGAGAA-TCATCCAA    997
                     |||||.|||||.||.|||||.||.|||||.||.||| |||| ||||||.|
RBAM_001800__    949 TGGGACAAGGATCAGTTTGCGCCTTCTGTCTATGAC-AGAAGTCATCCGA    997

BSNT_00263___    998 TCGGAGAAATATATCAGGACATCGCAAAAAAAATAGATGCAAAAATGTCT   1047
                     ||||.|||||.|||..||..|||||..|.|||.|...||.|||||     
RBAM_001800__    998 TCGGGGAAATTTATATGGGGATCGCCCAGAAAGTCATTGAAAAAA-----   1042

BSNT_00263___   1048 GTGCAG--GTATAA   1059
                        |||  |.||||
RBAM_001800__   1043 ---CAGCTGAATAA   1053


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