Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00263 and RBAM_001800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:04
# Commandline: needle
# -asequence dna-align/BSNT_00263___ybaL.1.9828.seq
# -bsequence dna-align/RBAM_001800___ybaL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00263___ybaL-RBAM_001800___ybaL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00263___ybaL-RBAM_001800___ybaL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00263___ybaL
# 2: RBAM_001800___ybaL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1064
# Identity: 854/1064 (80.3%)
# Similarity: 854/1064 (80.3%)
# Gaps: 16/1064 ( 1.5%)
# Score: 3419.5
#
#
#=======================================
BSNT_00263___ 1 ATGATAAGAGAAGATGAAGTAAGAAAACTAGTCGGAGAAATGCGCGAACC 50
||||||||||||||||||||||||||..||||||||.|.|||||||||||
RBAM_001800__ 1 ATGATAAGAGAAGATGAAGTAAGAAATATAGTCGGAAACATGCGCGAACC 50
BSNT_00263___ 51 TTTTCTTCAAAGACCTCTGGGAGAATTGGATGCCGTTAAGGAAATTAAAA 100
|||||||||.|||||.||||||||||||||||||.||||.|||.|.||.|
RBAM_001800__ 51 TTTTCTTCATAGACCGCTGGGAGAATTGGATGCCATTAAAGAAGTAAAGA 100
BSNT_00263___ 101 TAAAGCCTGAAAAACGGCATATCAGTGTAAAAGTCGCTCTTGCAAAAACA 150
|.|||||.||||||||||||.|||||||.|||.|.||..|.||||||||.
RBAM_001800__ 101 TCAAGCCGGAAAAACGGCATGTCAGTGTGAAAATTGCATTGGCAAAAACG 150
BSNT_00263___ 151 GGAACTGCAGAACAAATGCAGATTCAGCAAGAGATCGTAAACGTATTAAA 200
||.||.||.|||||.|||....|||||||.||.||||||..|||..|.||
RBAM_001800__ 151 GGGACGGCTGAACAGATGGGTGTTCAGCAGGAAATCGTATCCGTTCTGAA 200
BSNT_00263___ 201 AGGGGCAGGAGCTGAGACAGTCGGCCTTCGATTTGAAGAGCTGCCTGAAG 250
||..||.||.||.||.||.||.||.||.||.||||||||||||||.||||
RBAM_001800__ 201 AGAAGCGGGTGCGGAAACTGTGGGACTGCGGTTTGAAGAGCTGCCGGAAG 250
BSNT_00263___ 251 AAACGGTTGCTAAATTCCGGGCGCCGTCAGCTGAGAAAAAAACATTATTA 300
||||..|.||.||||||.|...||||.|.|||||.|...||||..|..|.
RBAM_001800__ 251 AAACATTGGCGAAATTCAGCCGGCCGGCTGCTGAAAGCGAAACCCTGCTG 300
BSNT_00263___ 301 AATATGGATAAC--CCGCCAGTCTTTCTTGCCGTAGCAAGTGGAAAAGGC 348
|||| ||| ||| |||||.|||||||||||.||.|||||.|||||||||
RBAM_001800__ 301 AATA-GGA-AACATCCGCCGGTCTTTCTTGCGGTGGCAAGCGGAAAAGGC 348
BSNT_00263___ 349 GGCGTAGGCAAGTCAACTGTGTCCGTAAACCTAGCTATTTCTCTGGCTCG 398
||.||.|||||.|||||.||.|||||.|||||.||.||||||||.||.||
RBAM_001800__ 349 GGTGTCGGCAAATCAACGGTTTCCGTCAACCTGGCCATTTCTCTTGCGCG 398
BSNT_00263___ 399 TCTAGGGAAAAAGGTTGGTTTAATTGATGCGGATATTTATGGGTTCAGTG 448
.||.||.|||||.||.||.||.||.||.||||||||.||.||.|||||.|
RBAM_001800__ 399 GCTCGGAAAAAAAGTCGGCTTGATCGACGCGGATATATACGGATTCAGCG 448
BSNT_00263___ 449 TGCCGGACATGATGGGTATCACTGTGCGTCCAACGATTGAAGGAGAGAAA 498
|||||||||||||||||||.||.||.|||||.||..|.||||||||.|||
RBAM_001800__ 449 TGCCGGACATGATGGGTATTACAGTTCGTCCGACAGTAGAAGGAGAAAAA 498
BSNT_00263___ 499 CTTCTTCCTGTTGAACGCTTTGGAGTAAAGGTCATGTCAATGGGCTTTTT 548
||.||||||||.|||.|.||||||||||||||.|||||.|||||||||||
RBAM_001800__ 499 CTGCTTCCTGTCGAAAGATTTGGAGTAAAGGTTATGTCGATGGGCTTTTT 548
BSNT_00263___ 549 CGTAGAAGAAAATGCTCCGGTCGTATGGAGAGGACCGATGCTCGGCAAAA 598
|||.||||||||.||||||||.||.||||||||.||||||||.|||||.|
RBAM_001800__ 549 CGTCGAAGAAAACGCTCCGGTTGTGTGGAGAGGGCCGATGCTGGGCAAGA 598
BSNT_00263___ 599 TGCTGAATAACTTTTTCCATGAAGTAGAGTGGGGAGAAGTAGACTATATC 648
|||||||||||||.|||||||||||.||.||||||||.||.|||||||||
RBAM_001800__ 599 TGCTGAATAACTTCTTCCATGAAGTTGACTGGGGAGAGGTTGACTATATC 648
BSNT_00263___ 649 GTTCTTGATCTTCCGCCTGGTACAGGGGATGTTGCTCTCGATGTACATAC 698
|||||.|||||.|||||.||.||.||.|||||.||.|||||||||||.||
RBAM_001800__ 649 GTTCTCGATCTGCCGCCCGGCACGGGTGATGTGGCGCTCGATGTACACAC 698
BSNT_00263___ 699 AATGCTTCCGAGCTGCAAAGAAATCATCGTATCTACGCCGCATCCGACAG 748
.||||||||||||||||||||.||.||||||||.||||||||.||.||||
RBAM_001800__ 699 GATGCTTCCGAGCTGCAAAGAGATTATCGTATCAACGCCGCACCCTACAG 748
BSNT_00263___ 749 CTGCTTTTGTCGCGGCCAGAGCGGGCTCTATGGCGATTAAAACCGATCAT 798
|.||.|||||.|||||.||||||||.||||||||||||||.|||||||||
RBAM_001800__ 749 CCGCATTTGTAGCGGCGAGAGCGGGTTCTATGGCGATTAAGACCGATCAT 798
BSNT_00263___ 799 GAGGTCGTGGGGGTCATAGAGAACATGGCTTATTATGAAAGTGCAAAGAC 848
||.||.||.||||||||.||.||.||||||||.||||||||||||||.||
RBAM_001800__ 799 GAAGTTGTAGGGGTCATTGAAAATATGGCTTACTATGAAAGTGCAAAAAC 848
BSNT_00263___ 849 AGGGGAAAGAGAATATGTCTTTGGAAAAGGCGGAGGAGATAAACTGGCTG 898
.||.||.|||||||||||.||.||..|||||||.||||||||.||.||.|
RBAM_001800__ 849 CGGCGAGAGAGAATATGTGTTCGGTCAAGGCGGGGGAGATAAGCTTGCGG 898
BSNT_00263___ 899 AGGAACTAAATGTGCCTTTGCTCGGCAGAATCCCATTGAAACAGCCAGAT 948
|||||.|..|.|||||..||||.||||||||.||.||.||||||||.|||
RBAM_001800__ 899 AGGAATTGCAAGTGCCGCTGCTTGGCAGAATTCCTTTAAAACAGCCTGAT 948
BSNT_00263___ 949 TGGGATAAGGACCAATTTGCTCCGTCTGTTTACGACGAGAA-TCATCCAA 997
|||||.|||||.||.|||||.||.|||||.||.||| |||| ||||||.|
RBAM_001800__ 949 TGGGACAAGGATCAGTTTGCGCCTTCTGTCTATGAC-AGAAGTCATCCGA 997
BSNT_00263___ 998 TCGGAGAAATATATCAGGACATCGCAAAAAAAATAGATGCAAAAATGTCT 1047
||||.|||||.|||..||..|||||..|.|||.|...||.|||||
RBAM_001800__ 998 TCGGGGAAATTTATATGGGGATCGCCCAGAAAGTCATTGAAAAAA----- 1042
BSNT_00263___ 1048 GTGCAG--GTATAA 1059
||| |.||||
RBAM_001800__ 1043 ---CAGCTGAATAA 1053
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