Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00252 and RBAM_001720
See
Amino acid alignment /
Visit
BSNT_00252 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:04
# Commandline: needle
# -asequence dna-align/BSNT_00252___ybaF.1.9828.seq
# -bsequence dna-align/RBAM_001720___ybaF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00252___ybaF-RBAM_001720___ybaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00252___ybaF-RBAM_001720___ybaF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00252___ybaF
# 2: RBAM_001720___ybaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 817
# Identity: 596/817 (72.9%)
# Similarity: 596/817 (72.9%)
# Gaps: 38/817 ( 4.7%)
# Score: 2172.0
#
#
#=======================================
BSNT_00252___ 1 ATGATGGACAGCATGATTATCGGCAAGTATGTACCGGGGACTTCACTTGT 50
|||||||||||||||||||||||.||||||||.||.||..|.||.|||.|
RBAM_001720__ 1 ATGATGGACAGCATGATTATCGGAAAGTATGTTCCCGGATCATCGCTTAT 50
BSNT_00252___ 51 TCACCGGCTTGACCCCAGAACAAAACTGATCACGATCTTTTTATTTGTCT 100
||||||..|.|||||..||||||||||..|||..||.|||.|.|||||.|
RBAM_001720__ 51 TCACCGATTGGACCCGCGAACAAAACTTGTCAGCATTTTTCTTTTTGTAT 100
BSNT_00252___ 101 GCATTGTATTCTTAGCCAATAATGTTCAGACATACGCGTTGCTTGGTTTA 150
|.||.||.||.||.||.||.||.||.|||||.|||||.|||||.|||||.
RBAM_001720__ 101 GTATCGTCTTTTTGGCAAACAACGTACAGACGTACGCTTTGCTCGGTTTG 150
BSNT_00252___ 151 TTTACAATTGGCGTCGTTTCTTTAACAAGAGTTCCTTTCTCTTTTTTAAT 200
||||||.|.||.||..|..|.||.||..|.||.||.|||...|||||..|
RBAM_001720__ 151 TTTACATTCGGGGTGATCGCCTTGACTCGCGTGCCGTTCAGCTTTTTGCT 200
BSNT_00252___ 201 GAAAGGGCTGAAGCCAATCATCTGGATTGT--------CCTTTTTACGTT 242
|||.|||||.|||||.||.||||||||||| ||||||||
RBAM_001720__ 201 GAAGGGGCTTAAGCCGATTATCTGGATTGTGGCGTTTACCTTTTTA---- 246
BSNT_00252___ 243 CCTTCTT-CACATCCTTATGACACATGAAGGACCGATTATCTTTCAAATA 291
|| |||||..|.|||||.|||||||||.|..|.||.|||||..|.
RBAM_001720__ 247 -----TTACACATTTTCATGACGCATGAAGGATCTGTCATTTTTCAGCTT 291
BSNT_00252___ 292 GGTTTTTTCAAAGTCTATGAGGGCGGTCTGGTTCAGGGGATATTCATTTC 341
||.|..||.|||||.|||||||||||.||..|.|||||.||.||.||.||
RBAM_001720__ 292 GGCTGGTTTAAAGTGTATGAGGGCGGACTTATACAGGGTATTTTTATCTC 341
BSNT_00252___ 342 TCTTAGATTCGTCTATTTGATTTTAATCACAACTTTATTAACGCTTACGA 391
.||..|.|||||.||..|.||.||.||.||.||..|..|.|||||.||.|
RBAM_001720__ 342 CCTCCGTTTCGTTTACCTTATCTTTATGACGACGCTGCTGACGCTGACAA 391
BSNT_00252___ 392 CCACACCGATTGAGATTACCGATGGAATGGAGCAGCTGCTGAACCCATTG 441
|.||.||||||||.||.||.||||||.||||||||||.|||||.||.||.
RBAM_001720__ 392 CAACGCCGATTGAAATAACGGATGGACTGGAGCAGCTCCTGAATCCTTTT 441
BSNT_00252___ 442 AAAAAATTAAAGCTTCCTGTTCATGAGCTGGCTCTTATGATGTCAATTTC 491
|||||..|.|||||.||.||.||.||.||.||..|.||||||||.||.||
RBAM_001720__ 442 AAAAAGGTGAAGCTGCCCGTACACGAACTCGCATTGATGATGTCGATATC 491
BSNT_00252___ 492 TTTACGGTTTATTCCGACACTGATGGAGGAGACAGATAAGATCATGAAGG 541
.||.||.|||||.||.|||.|||||||.|||||||||||.||||||||||
RBAM_001720__ 492 ATTGCGATTTATCCCTACATTGATGGAAGAGACAGATAAAATCATGAAGG 541
BSNT_00252___ 542 CTCAGATGGCGCGAGGCGTTGATTTTACAAGCGGGCCTGTCAAAGAAAGA 591
|.||.||||||.|.||.|..||.|||||||||||.||.||.|||||.|||
RBAM_001720__ 542 CGCAAATGGCGAGGGGTGCGGACTTTACAAGCGGCCCGGTGAAAGACAGA 591
BSNT_00252___ 592 GTGAAGGCTATTGTCCCGCTTCTTGTCCCGCTCTTCGTCAGCGCATTTAA 641
.|.||.||..||||.|||||.|||||||||||.||.||||||||.|||||
RBAM_001720__ 592 ATCAAAGCGGTTGTTCCGCTGCTTGTCCCGCTGTTTGTCAGCGCCTTTAA 641
BSNT_00252___ 642 ACGCGCCGAAGAGCTTGCGGTGGCAATGGAAGCAAGAGGCTATCAAGGCG 691
||||||.||||||||.|||||.||.|||||.||.||||||||.||.||||
RBAM_001720__ 642 ACGCGCGGAAGAGCTCGCGGTCGCCATGGAGGCGAGAGGCTACCAGGGCG 691
BSNT_00252___ 692 GAGAAGGACGTACGAAATATAGAAAGCTTGTATGGACAGGAAAAGACAC- 740
|.||.||..|.||||||||.||||||||.||.|||||.|||||.||.||
RBAM_001720__ 692 GTGAGGGGAGAACGAAATACAGAAAGCTCGTCTGGACCGGAAAGGATACC 741
BSNT_00252___ 741 -------TTCTGTCATTGTCAGCTTA--ATTGTATTAGCTGCTTTGTTAT 781
|||| ||||| ||.||||||||.|..||.||.|
RBAM_001720__ 742 GGAGCTATTCT----------GCTTATCATCGTATTAGCCGTGTTATTGT 781
BSNT_00252___ 782 TTTTCTTAAGGGCTTAG 798
||||||||||...||||
RBAM_001720__ 782 TTTTCTTAAGAAGTTAG 798
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.