Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00248 and RBAM_001680
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_00248___rpoA.1.9828.seq
# -bsequence dna-align/RBAM_001680___rpoA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00248___rpoA-RBAM_001680___rpoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00248___rpoA-RBAM_001680___rpoA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00248___rpoA
# 2: RBAM_001680___rpoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 945
# Identity: 895/945 (94.7%)
# Similarity: 895/945 (94.7%)
# Gaps: 0/945 ( 0.0%)
# Score: 4275.0
#
#
#=======================================
BSNT_00248___ 1 ATGATCGAGATTGAAAAACCAAAAATCGAAACGGTTGAAATCAGCGACGA 50
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001680__ 1 ATGATCGAGATTGAAAAACCAAAAATCGAAACGGTTGAAATCAGCGACGA 50
BSNT_00248___ 51 TGCCAAATTTGGTAAGTTTGTCGTAGAGCCACTTGAGCGTGGATATGGTA 100
||||||||||||||||||||||||||||||.|||||||||||||||||||
RBAM_001680__ 51 TGCCAAATTTGGTAAGTTTGTCGTAGAGCCGCTTGAGCGTGGATATGGTA 100
BSNT_00248___ 101 CAACTCTGGGTAACTCCTTACGTCGTATCCTCTTATCCTCACTCCCTGGT 150
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001680__ 101 CAACTCTGGGTAACTCCTTACGTCGTATCCTCTTATCCTCACTCCCTGGT 150
BSNT_00248___ 151 GCCGCTGTAACATCAATCCAGATAGATGGTGTACTGCACGAATTCTCGAC 200
||||||||||||||.|||||||||||||||||||||||||||||||||||
RBAM_001680__ 151 GCCGCTGTAACATCGATCCAGATAGATGGTGTACTGCACGAATTCTCGAC 200
BSNT_00248___ 201 AATTGAAGGCGTTGTGGAAGATGTTACAACGATTATCTTACACATTAAAA 250
|||.|||||||||||||||||||||||||||||.|||||.||||||||||
RBAM_001680__ 201 AATCGAAGGCGTTGTGGAAGATGTTACAACGATAATCTTGCACATTAAAA 250
BSNT_00248___ 251 AGCTTGCATTGAAAATCTACTCTGATGAAGAGAAGACGCTAGAAATTGAT 300
||||||||||||||||||||||||||||||||||||||||.|||||||||
RBAM_001680__ 251 AGCTTGCATTGAAAATCTACTCTGATGAAGAGAAGACGCTTGAAATTGAT 300
BSNT_00248___ 301 GTACAGGGTGAAGGAACTGTAACGGCAGCTGATATTACACACGATAGTGA 350
||||||||.|||||||||||.||.||||||||||||||||||||.||.||
RBAM_001680__ 301 GTACAGGGCGAAGGAACTGTCACAGCAGCTGATATTACACACGACAGCGA 350
BSNT_00248___ 351 TGTAGAGATCTTAAATCCTGATCTTCATATCGCGACTCTTGGTGAGAATG 400
|||.||.|||.|.|||||.|||||||||||.|||||||||||||||||||
RBAM_001680__ 351 TGTTGAAATCCTTAATCCGGATCTTCATATTGCGACTCTTGGTGAGAATG 400
BSNT_00248___ 401 CGAGTTTCCGAGTTCGCCTTACTGCTCAAAGAGGACGTGGGTATACGCCT 450
|||||||||||||||||||||||||.||||||||||||||||||||.|||
RBAM_001680__ 401 CGAGTTTCCGAGTTCGCCTTACTGCACAAAGAGGACGTGGGTATACACCT 450
BSNT_00248___ 451 GCTGACGCAAACAAGAGAGACGATCAGCCAATCGGCGTGATTCCGATCGA 500
|||||..|.|||||.|||||||||||||||||||||||||||||||||||
RBAM_001680__ 451 GCTGATTCGAACAAAAGAGACGATCAGCCAATCGGCGTGATTCCGATCGA 500
BSNT_00248___ 501 TTCTATCTATACGCCAGTTTCTCGTGTATCTTATCAGGTAGAGAACACTC 550
|||.||||.||||||||||||||||.||||||||||||||||.|||||||
RBAM_001680__ 501 TTCAATCTTTACGCCAGTTTCTCGTTTATCTTATCAGGTAGAAAACACTC 550
BSNT_00248___ 551 GTGTAGGCCAAGTTGCAAACTATGATAAACTTACACTTGATGTTTGGACT 600
||||||||||.||||||||||||||.||||||||||||||||||||||||
RBAM_001680__ 551 GTGTAGGCCAGGTTGCAAACTATGACAAACTTACACTTGATGTTTGGACT 600
BSNT_00248___ 601 GATGGAAGCACTGGACCGAAAGAAGCAATTGCGCTTGGTTCAAAGATTTT 650
||.|||||||||||||||||.|||||||||||.||.||||||||||||||
RBAM_001680__ 601 GACGGAAGCACTGGACCGAAGGAAGCAATTGCTCTCGGTTCAAAGATTTT 650
BSNT_00248___ 651 AACTGAACACCTTAATATATTCGTTGGTTTAACTGACGAAGCTCAACATG 700
||||||||||||||||||||||||.||||||||||||||||||||.||||
RBAM_001680__ 651 AACTGAACACCTTAATATATTCGTCGGTTTAACTGACGAAGCTCAGCATG 700
BSNT_00248___ 701 CTGAAATCATGGTTGAAAAAGAAGAAGATCAAAAAGAGAAAGTTCTTGAA 750
|||||||||||||||||||||||||.|||||||||||.||||||||||||
RBAM_001680__ 701 CTGAAATCATGGTTGAAAAAGAAGAGGATCAAAAAGAAAAAGTTCTTGAA 750
BSNT_00248___ 751 ATGACAATTGAAGAATTGGATCTTTCTGTTCGTTCTTACAACTGCTTAAA 800
|||||.|||||.|||.|.||.||||||||.|||||||||||||||||.||
RBAM_001680__ 751 ATGACGATTGAGGAACTTGACCTTTCTGTCCGTTCTTACAACTGCTTGAA 800
BSNT_00248___ 801 GCGTGCGGGTATTAACACGGTTCAAGAGCTTGCGAACAAGACGGAAGAAG 850
|||||||||.|||||||||||||||||.||||||||||||||||||||||
RBAM_001680__ 801 GCGTGCGGGCATTAACACGGTTCAAGAACTTGCGAACAAGACGGAAGAAG 850
BSNT_00248___ 851 ATATGATGAAAGTTCGAAATCTAGGACGCAAATCACTTGAAGAAGTGAAA 900
||||||||||||||||.||.||.|||||||||||||||||||||||||||
RBAM_001680__ 851 ATATGATGAAAGTTCGCAACCTGGGACGCAAATCACTTGAAGAAGTGAAA 900
BSNT_00248___ 901 GCGAAACTAGAAGAACTTGGACTCGGACTTCGCAAAGACGATTGA 945
||||||||||||||||||||||||||.||||||||||||||||||
RBAM_001680__ 901 GCGAAACTAGAAGAACTTGGACTCGGCCTTCGCAAAGACGATTGA 945
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