Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00231 and RBAM_001520

See Amino acid alignment / Visit BSNT_00231 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:02
# Commandline: needle
#    -asequence dna-align/BSNT_00231___rplX.1.9828.seq
#    -bsequence dna-align/RBAM_001520___rplX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00231___rplX-RBAM_001520___rplX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00231___rplX-RBAM_001520___rplX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00231___rplX
# 2: RBAM_001520___rplX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 312
# Identity:     298/312 (95.5%)
# Similarity:   298/312 (95.5%)
# Gaps:           0/312 ( 0.0%)
# Score: 1434.0
# 
#
#=======================================

BSNT_00231___      1 ATGCATGTAAAAAAAGGCGATAAAGTTATGGTTATCTCTGGTAAAGATAA     50
                     ||||||||.|||||||||||||||||.|||||||||||||||||||||||
RBAM_001520__      1 ATGCATGTGAAAAAAGGCGATAAAGTAATGGTTATCTCTGGTAAAGATAA     50

BSNT_00231___     51 AGGCAAACAAGGAACAATCCTTGCTGCTTTCCCTAAAAAGGACCGCGTTT    100
                     ||||||||||||.||.|||||||||||||||||||||||||||||||||.
RBAM_001520__     51 AGGCAAACAAGGTACGATCCTTGCTGCTTTCCCTAAAAAGGACCGCGTTC    100

BSNT_00231___    101 TAGTTGAAGGTGTTAACATGGTAAAGAAACACTCTAAACCAACTCAAGCT    150
                     |||||||.||.||.||||||||.|||||.||||||||||||||||||||.
RBAM_001520__    101 TAGTTGAGGGCGTAAACATGGTGAAGAAGCACTCTAAACCAACTCAAGCA    150

BSNT_00231___    151 AACCCTCAAGGCGGTATTTCTAATCAAGAGGCGCCAATTCATGTATCAAA    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001520__    151 AACCCTCAAGGCGGTATTTCTAATCAAGAGGCGCCAATTCATGTATCAAA    200

BSNT_00231___    201 CGTTATGCCGCTCGATCCTAAAACAGGTGAAGTGACTCGCGTAGGATACA    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001520__    201 CGTTATGCCGCTCGATCCTAAAACAGGTGAAGTGACTCGCGTAGGATACA    250

BSNT_00231___    251 AAGTGGAAGATGGCAAAAAAGTTCGTGTAGCAAAAAAATCTGGGCAAGTT    300
                     ||||||||||||||||||||||||||||.||||||||||||||||||||.
RBAM_001520__    251 AAGTGGAAGATGGCAAAAAAGTTCGTGTTGCAAAAAAATCTGGGCAAGTC    300

BSNT_00231___    301 CTAGATAAATAG    312
                     .|||||||||||
RBAM_001520__    301 TTAGATAAATAG    312


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