Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00225 and RBAM_001460

See Amino acid alignment / Visit BSNT_00225 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:01
# Commandline: needle
#    -asequence dna-align/BSNT_00225___rplV.1.9828.seq
#    -bsequence dna-align/RBAM_001460___rplV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00225___rplV-RBAM_001460___rplV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00225___rplV-RBAM_001460___rplV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00225___rplV
# 2: RBAM_001460___rplV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 342
# Identity:     319/342 (93.3%)
# Similarity:   319/342 (93.3%)
# Gaps:           0/342 ( 0.0%)
# Score: 1503.0
# 
#
#=======================================

BSNT_00225___      1 ATGCAAGCTAAAGCTGTTGCAAGAACAGTCCGTATTGCTCCTCGTAAAGC     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001460__      1 ATGCAAGCTAAAGCTGTTGCAAGAACAGTCCGTATTGCTCCTCGTAAAGC     50

BSNT_00225___     51 ACGTCTAGTAATGGACCTGATTCGAGGCAAGCAAGTAGGTGAGGCAGTAT    100
                     |||||||||||||||||||||||||||.|||||||||||.||.|||||||
RBAM_001460__     51 ACGTCTAGTAATGGACCTGATTCGAGGTAAGCAAGTAGGCGAAGCAGTAT    100

BSNT_00225___    101 CAATCTTGAACCTTACACCAAGAGCTGCTTCTCCAATTATCGAGAAAGTA    150
                     |.|||.|||||.|.||.||.||||||||||||||.||.|||||.|||||.
RBAM_001460__    101 CTATCCTGAACTTAACTCCGAGAGCTGCTTCTCCGATCATCGAAAAAGTT    150

BSNT_00225___    151 TTAAAATCCGCTATTGCAAATGCTGAGCATAACTATGAAATGGACGCTAA    200
                     ||||||||.|||||.||||||||||||||.|||||.||.|||||||||||
RBAM_001460__    151 TTAAAATCTGCTATCGCAAATGCTGAGCACAACTACGAGATGGACGCTAA    200

BSNT_00225___    201 CAACCTGGTTATTTCTCAAGCATTCGTTGACGAAGGCCCTACGTTAAAAA    250
                     |||.||||||||||||||.|||||.||||||||||||||.||||||||||
RBAM_001460__    201 CAATCTGGTTATTTCTCAGGCATTTGTTGACGAAGGCCCAACGTTAAAAA    250

BSNT_00225___    251 GATTCCGCCCACGTGCTATGGGACGTGCGAGCCAAATCAACAAACGTACG    300
                     ||||||||||.|||||||||||||||||||||||||||||||||||||||
RBAM_001460__    251 GATTCCGCCCGCGTGCTATGGGACGTGCGAGCCAAATCAACAAACGTACG    300

BSNT_00225___    301 AGCCACATTACAATCGTTGTATCAGAAAAGAAGGAGGGATAA    342
                     ||||||||||||||||||||||||||||||||||||||||||
RBAM_001460__    301 AGCCACATTACAATCGTTGTATCAGAAAAGAAGGAGGGATAA    342


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