Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00217 and RBAM_001390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:01
# Commandline: needle
# -asequence dna-align/BSNT_00217___ybaC.1.9828.seq
# -bsequence dna-align/RBAM_001390___ybaC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00217___ybaC-RBAM_001390___ybaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00217___ybaC-RBAM_001390___ybaC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00217___ybaC
# 2: RBAM_001390___ybaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1110
# Identity: 625/1110 (56.3%)
# Similarity: 625/1110 (56.3%)
# Gaps: 297/1110 (26.8%)
# Score: 1626.0
#
#
#=======================================
BSNT_00217___ 1 ATGA--------TTCCTGAAAAG-AAATCAATCG-----CAATCATGAAA 36
|||| ||| ||| |||.|||||| ||||..|
RBAM_001390__ 1 ATGAACGATAACTTC-----AAGAAAACCAATCGTATTTCAATGCT---- 41
BSNT_00217___ 37 GAACTAAGC-ATTG--GA--AAT--------ACAAAGCAAATGCTGATGA 73
|.||| |||| || ||| |||||.|| |.||||
RBAM_001390__ 42 ----TCAGCAATTGCTGATTAATGGCAGTGAACAAACCA-----TTATGA 82
BSNT_00217___ 74 TTAATGGAGTTGACGTGAAAAATCCATTGCTCCTTTTTTTACATGGCGGG 123
|||||||.|.||||..||..|||||..||||..|.|||||.||.|||||.
RBAM_001390__ 83 TTAATGGTGATGACAGGAGTAATCCGCTGCTTTTATTTTTGCACGGCGGT 132
BSNT_00217___ 124 CCGGGAACGCCGCAAATCGGATATGTTAGACATTATCAAAAAGAGCTGGA 173
||.||.|||||.||||||||.||||..|||.|.||.||.||..|||||||
RBAM_001390__ 133 CCCGGCACGCCTCAAATCGGCTATGCGAGAAAATACCAGAATAAGCTGGA 182
BSNT_00217___ 174 ACAGTATTTTACAGTAGTTCATTGGGATCAGAGAGGATCGGGGCTTTCTT 223
|.||.||||.||.||.||..|.||||||||||||||..||||.||.||||
RBAM_001390__ 183 AAAGCATTTCACCGTTGTGAACTGGGATCAGAGAGGGGCGGGTCTCTCTT 232
BSNT_00217___ 224 ATTCTAAGCGAAT------TTCACATCACTCTATGACAATAGATCA-CTT 266
||||.|||..||| |||| ||||||||..|.||||| |
RBAM_001390__ 233 ATTCAAAGGAAATTCCGGGTTCA------TCTATGACCTTGGATCAGC-- 274
BSNT_00217___ 267 CATTAAA---GATACAATCCAAGTCACTCAATGGCTTT--TAGCTCATTT 311
|.|.| |||||.||.||..|.||..||.|.||.| .|||
RBAM_001390__ 275 --TGACAGCCGATACCATTCATTTGACCGAACGCCTATGCAAGC------ 316
BSNT_00217___ 312 TTCAAAATC--------AAAACTTTACCTAGCCGGTCATTCTTGGGGGTC 353
||.|| ||||.|.||..|.||||||.||||.||||||||
RBAM_001390__ 317 ----AATTCAGCAGGCAAAAAATATATATCGCCGGTTATTCGTGGGGGTC 362
BSNT_00217___ 354 AATACTGGCGCTTCATGTGCTGCAGCAGTGTCCTGATTTATTTTACGCGT 403
|.|.||||||||||||||.||.||..||.|.||||||||.|.|||.||||
RBAM_001390__ 363 AGTTCTGGCGCTTCATGTTCTTCAAGAGAGACCTGATTTGTATTATGCGT 412
BSNT_00217___ 404 ATTAT-GGAATCAGCCAGGTTGTTAACCCTCACGATGAAGAATC--AACT 450
| ||| ||.|||||.|||||.|||||...|||..|.||||||.| ||
RBAM_001390__ 413 A-TATCGGTATCAGTCAGGTGGTTAATATTCAAAAGGAAGAAACGGAA-- 459
BSNT_00217___ 451 GCTTTCC------------AA----------AATATTCGTGAA-ATTTCT 477
||||.|| || || ||..|| |||||
RBAM_001390__ 460 GCTTACCGGCTGATGTTGGAATGGAGCAGGCAA----CGCAAACATTTC- 504
BSNT_00217___ 478 AAATC------AAAAAAAGC-CAGCTTATTATCTTTCCTCACACGTTTCA 520
| ||||.|.|| .|||| |||||
RBAM_001390__ 505 ----CTGCTGGAAAAGACGCTGAGCT--TTATC----------------- 531
BSNT_00217___ 521 TTGGTGCTCCGCCTTGGAAGCAGGATATCCAGC--ACCTTATCTATCGGT 568
||.||.||.||.|||.||.|..|..|.|||| .|.||| |.||.|.
RBAM_001390__ 532 --GGAGCGCCTCCATGGGAGAAACAGCTGCAGCGATCGTTA--TTTCTGC 577
BSNT_00217___ 569 TTTGTGTCGAGCTAAGCAGGGGAGGCTTCACTCGCCGTCATCGTCAATCT 618
|||||.|||||.|.||..|.||.|||||.|| ||.||||| |.|||
RBAM_001390__ 578 TTTGTATCGAGATGAGGGGAGGGGGCTTTAC---CCATCATC--CGATC- 621
BSNT_00217___ 619 CTAGCTGTATTATTTCA--------AATGCTTACTGGCAATGA---GTAT 657
.||..|.|||...|| ||||||...||| ||| |||.
RBAM_001390__ 622 --GGCGCTCTTAAAGCAGGGGGGCGAATGCTGTTTGG---TGAACCGTAC 666
BSNT_00217___ 658 GGAGTGCGGAACATGCACAGCTTCCTCAATGGATT----GCGC------- 696
||.||| |.|.| .|||||| || ||||
RBAM_001390__ 667 GGTGTG----AGAGG--GAGCTTC---------TTAGCCGCGCGGGGACA 701
BSNT_00217___ 697 ----TTCAGTAAAAAACATTTAACTGGTGAG-------TTGTACCGGTTT 735
|||||....|||||..|| ||| ||| ||.| .|||
RBAM_001390__ 702 AATGTTCAGCCTGAAACACCTA--TGG-GAGGATCTCATTTT----CTTT 744
BSNT_00217___ 736 AATGCTTTTAC-----ATCAGTTCCTTCTATTAAAGTACCGTG-TGTTTT 779
.|||| | |||||||.|||||||||.|.||||||| ||||||
RBAM_001390__ 745 GATGC-----CGGAGAATCAGTTTCTTCTATTATAATACCGTGCTGTTTT 789
BSNT_00217___ 780 CATTTCAGGGAAACATGACTTAATTGTTC------------CTGCTGAAA 817
||.|||||||.|.|.||.||.|..||.| ||..||||
RBAM_001390__ 790 -ATGTCAGGGAGATACGATTTGACGGTCCCGGGGACGACGTCTTTTGAA- 837
BSNT_00217___ 818 TATCGAAACAGTATTATCAAGTGCTTGAGGCACC------CGAAAAGCGC 861
||||||||...|.||||.||.|| .|||..||..
RBAM_001390__ 838 -----------TATTATCAGAAGGTTGATGCGCCGTATAAAGAATGGCAT 876
BSNT_00217___ 862 TGGTTTCAATTTGAGAACTCAGCTCACACCCCGCATATTGAGGAGCCGGC 911
||| ||||||||||||||.||..|.||.||..|.|||||.||||
RBAM_001390__ 877 TGG------TTTGAGAACTCAGCCCATTCGCCTCACTTGGAGGAACCGG- 919
BSNT_00217___ 912 ATTATTCGCGAACACATT-----AAGTCGACATGCACG----ACA----- 947
.|||| || ||||.|.|| || || .||
RBAM_001390__ 920 ----ATCGC-------TTTGCCGAAGTTGTCA-GC-CGGTTCGCATCGTT 956
BSNT_00217___ 948 CCATTTATGA 957
||||.|.|||
RBAM_001390__ 957 CCATCTCTGA 966
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