Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00203 and RBAM_001280

See Amino acid alignment / Visit BSNT_00203 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:58
# Commandline: needle
#    -asequence dna-align/BSNT_00203___rplA.1.9828.seq
#    -bsequence dna-align/RBAM_001280___rplA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00203___rplA-RBAM_001280___rplA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00203___rplA-RBAM_001280___rplA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00203___rplA
# 2: RBAM_001280___rplA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 699
# Identity:     631/699 (90.3%)
# Similarity:   631/699 (90.3%)
# Gaps:           0/699 ( 0.0%)
# Score: 2883.0
# 
#
#=======================================

BSNT_00203___      1 ATGGCTAAAAAAGGTAAAAAGTACGTTGAAGCTGCTAAGCTTGTAGACCG     50
                     |||||||||||||||||||||||||||||||||||.||||||||||||||
RBAM_001280__      1 ATGGCTAAAAAAGGTAAAAAGTACGTTGAAGCTGCGAAGCTTGTAGACCG     50

BSNT_00203___     51 TTCTAAAGCTTACGACGTCTCTGAAGCAGTAGCTCTCGTTAAAAAAACAA    100
                     |.|.|||||||||||||||.||||||||||.||.||...|||||||||||
RBAM_001280__     51 TGCGAAAGCTTACGACGTCGCTGAAGCAGTGGCGCTTACTAAAAAAACAA    100

BSNT_00203___    101 ACACAGCTAAATTCGACGCTACAGTTGAAGTGGCTTTCCGTTTAGGGGTT    150
                     |||||||||||||||||||||||||||||||.|||||.||||||||||||
RBAM_001280__    101 ACACAGCTAAATTCGACGCTACAGTTGAAGTTGCTTTTCGTTTAGGGGTT    150

BSNT_00203___    151 GACCCTCGTAAAAACGACCAGCAAATCCGTGGAGCAGTTGTGCTTCCAAA    200
                     |||||||||||||||||.||||||||.||.||.||||||||.|||||.||
RBAM_001280__    151 GACCCTCGTAAAAACGATCAGCAAATTCGCGGTGCAGTTGTACTTCCTAA    200

BSNT_00203___    201 CGGAACTGGTAAAACTCAGCGCGTTCTCGTTTTCGCAAAAGGCGAAAAAG    250
                     ||||||||||||||||||||||||.||.||.|||||.|||||||||||||
RBAM_001280__    201 CGGAACTGGTAAAACTCAGCGCGTGCTTGTATTCGCTAAAGGCGAAAAAG    250

BSNT_00203___    251 CGAAAGAAGCTGAAGCTGCTGGTGCAGATTTCGTAGGCGACACTGACTAC    300
                     |.|||||||||||||||||.||||||||.|.|||.|||||..||||.|||
RBAM_001280__    251 CAAAAGAAGCTGAAGCTGCCGGTGCAGACTACGTTGGCGATTCTGATTAC    300

BSNT_00203___    301 ATCAACAAAATTCAACAAGGCTGGTTCGATTTCGATGTTATCGTAGCTAC    350
                     |||...|||||.||.||||||||||||||.||||||||.|||||.||.||
RBAM_001280__    301 ATCGCGAAAATCCAGCAAGGCTGGTTCGAATTCGATGTAATCGTTGCGAC    350

BSNT_00203___    351 ACCTGACATGATGGGTGAAGTTGGTAAAATCGGTCGTGTACTTGGACCAA    400
                     .||||||||||||||||||||.|||||||||||.|||||.||||||||||
RBAM_001280__    351 TCCTGACATGATGGGTGAAGTCGGTAAAATCGGCCGTGTGCTTGGACCAA    400

BSNT_00203___    401 AAGGTTTAATGCCAAACCCTAAAACTGGTACAGTTACTTTCGAAGTTGAA    450
                     |||||.|.|||||||||||||||||.||.||.|||||.||||||||.|||
RBAM_001280__    401 AAGGTCTTATGCCAAACCCTAAAACAGGAACTGTTACATTCGAAGTGGAA    450

BSNT_00203___    451 AAAGCGATCGGCGAAATCAAAGCTGGTAAAGTTGAATACCGCGTTGATAA    500
                     |||||.||||||||||||||||||||||||||.||||||||||||||.||
RBAM_001280__    451 AAAGCAATCGGCGAAATCAAAGCTGGTAAAGTAGAATACCGCGTTGACAA    500

BSNT_00203___    501 AGCTGGAAACATTCATGTTCCTATCGGTAAAGTTTCTTTCGAGGATGAAA    550
                     ||||||.|||||.||||||||.|||||.||||||||||||||||||||||
RBAM_001280__    501 AGCTGGTAACATCCATGTTCCGATCGGAAAAGTTTCTTTCGAGGATGAAA    550

BSNT_00203___    551 AACTTGTTGAGAACTTCACAACAATGTACGATACAATCCTTAAAGCTAAA    600
                     ||||||||||||||||||||||||||||.|||||||||||.|||||.|||
RBAM_001280__    551 AACTTGTTGAGAACTTCACAACAATGTATGATACAATCCTGAAAGCAAAA    600

BSNT_00203___    601 CCTGCTGCAGCTAAAGGCGTTTACGTGAAAAACGTTGCTGTAACTTCTAC    650
                     ||.|||||.||||||||.||||||||||||||||||||.||.||||||||
RBAM_001280__    601 CCGGCTGCGGCTAAAGGTGTTTACGTGAAAAACGTTGCCGTTACTTCTAC    650

BSNT_00203___    651 TATGGGACCTGGTGTCAAAGTAGACTCTTCAACTTTTAACGTAAAATAA    699
                     ||||||.||||||||||||||||||.||||.|||||.||||||||||||
RBAM_001280__    651 TATGGGCCCTGGTGTCAAAGTAGACGCTTCTACTTTCAACGTAAAATAA    699


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