Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00178 and RBAM_001110
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:57
# Commandline: needle
# -asequence dna-align/BSNT_00178___clpC.1.9828.seq
# -bsequence dna-align/RBAM_001110___clpC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00178___clpC-RBAM_001110___clpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00178___clpC-RBAM_001110___clpC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00178___clpC
# 2: RBAM_001110___clpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2435
# Identity: 2060/2435 (84.6%)
# Similarity: 2060/2435 (84.6%)
# Gaps: 4/2435 ( 0.2%)
# Score: 8795.0
#
#
#=======================================
BSNT_00178___ 1 ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAAGTACTGGCGCTAGC 50
||||||||||||||.||||||||.|||||||||||.|||.||||.||.||
RBAM_001110__ 1 ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGC 50
BSNT_00178___ 51 ACAGGAAGAAGCACTTCGGTTAGGTCATAATAACATTGGCACTGAGCATA 100
|||||||||||||||.||.|||||||||||.||.|||||.|||||.||||
RBAM_001110__ 51 ACAGGAAGAAGCACTGCGCTTAGGTCATAACAATATTGGAACTGAACATA 100
BSNT_00178___ 101 TTTTATTAGGACTGGTAAGAGAAGGAGAGGGCATTGCTGCTAAAGCTCTT 150
|.||||||||.|||||..|.||||||||.||.|||||.||||||||.||.
RBAM_001110__ 101 TCTTATTAGGTCTGGTTCGTGAAGGAGAAGGGATTGCGGCTAAAGCACTC 150
BSNT_00178___ 151 CAAGCGCTTGGACTCGGTTCAGATAAAATTCAGAAAGAAGTAGAAAGTTT 200
|||||.||.|||||||||||.||||||||||||||||||||.||.||.||
RBAM_001110__ 151 CAAGCACTCGGACTCGGTTCGGATAAAATTCAGAAAGAAGTGGAGAGCTT 200
BSNT_00178___ 201 GATCGGGCGCGGGCAGGAAATGTCTCAAACGATTCATTATACTCCTAGAG 250
.|||||.||.||.|||||||||||||||||||||||||||||.||.||||
RBAM_001110__ 201 AATCGGACGGGGACAGGAAATGTCTCAAACGATTCATTATACGCCAAGAG 250
BSNT_00178___ 251 CTAAAAAAGTCATTGAGCTTTCA--ATGGATGAGGCAAGAAAACTCGGTC 298
|.|||||||||||||||| ||| ||||||||.||.|||||.||.||.|
RBAM_001110__ 251 CAAAAAAAGTCATTGAGC--TCAGCATGGATGAAGCCAGAAAGCTAGGAC 298
BSNT_00178___ 299 ATTCTTATGTTGGAACAGAACATATTCTTCTTGGTCTGATTCGTGAAGGA 348
||||||||||.|||||||||||.||.|||||.||.|||||||||||||||
RBAM_001110__ 299 ATTCTTATGTGGGAACAGAACACATACTTCTCGGACTGATTCGTGAAGGA 348
BSNT_00178___ 349 GAAGGTGTTGCTGCGAGAGTTCTGAATAATCTCGGTGTCAGCTTAAATAA 398
|||||.||.||.||||||||||||||||||||||||||||||||.|||||
RBAM_001110__ 349 GAAGGCGTGGCGGCGAGAGTTCTGAATAATCTCGGTGTCAGCTTGAATAA 398
BSNT_00178___ 399 AGCAAGACAGCAGGTGCTCCAGCTTCTAGGAAGTAATGAAACAGGATCAT 448
.||.||||||||.|||||.||||||||.|||||.|||||.||.||.||.|
RBAM_001110__ 399 GGCGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGGTCTT 448
BSNT_00178___ 449 CAGCGGCAGGAACAAACAGCAATGCGAATACGCCTACTCTTGACAGCTTG 498
|.||..|.||.||.||||||||||||||.|||||.||.||||||||||||
RBAM_001110__ 449 CTGCATCCGGTACGAACAGCAATGCGAACACGCCGACGCTTGACAGCTTG 498
BSNT_00178___ 499 GCAAGAGACTTAACTGCTATTGCGAAGGAAGACAGCCTTGACCCTGTAAT 548
||..|.||.||||||||.|||||||||||||||||.|||||.||.||.||
RBAM_001110__ 499 GCGCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTAT 548
BSNT_00178___ 549 CGGCAGAAGCAAGGAGATCCAGCGTGTCATTGAAGTGTTAAGCCGCAGAA 598
||||.|||||||.||.||.||||||||.|||||.||.|||||||||||||
RBAM_001110__ 549 CGGCCGAAGCAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAA 598
BSNT_00178___ 599 CGAAAAACAACCCTGTTCTCATTGGGGAACCAGGTGTAGGTAAAACGGCT 648
||||.||.|||||.|||||.||.||.|||||.||||||||||||||.||.
RBAM_001110__ 599 CGAAGAATAACCCCGTTCTTATCGGAGAACCGGGTGTAGGTAAAACTGCG 648
BSNT_00178___ 649 ATCGCAGAAGGTTTGGCACAGCAAATTATCAATAATGAAGTACCCGAAAT 698
||.||.|||||..|.||||||||.||.||||||||||||||.||.|||||
RBAM_001110__ 649 ATTGCTGAAGGCCTTGCACAGCAGATCATCAATAATGAAGTGCCGGAAAT 698
BSNT_00178___ 699 TTTGCGTGATAAACGTGTGATGACATTAGACATGGGAACAGTTGTTGCCG 748
|||.|||||||||||.||.|||||||||||||||||.||.|||||.||||
RBAM_001110__ 699 TTTACGTGATAAACGCGTAATGACATTAGACATGGGTACGGTTGTAGCCG 748
BSNT_00178___ 749 GCACAAAATACCGCGGAGAATTTGAGGATCGCCTGAAGAAGGTCATGGAT 798
|.||.||||||||||||||||||||.||.|||.||||.||.||.||||||
RBAM_001110__ 749 GTACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAAGTAATGGAT 798
BSNT_00178___ 799 GAAATTCGCCAGGCAGGAAATATCATTCTATTCATCGATGAGCTCCATAC 848
|||||.||.|||||.||.|||||.|||.|||||||.||.||.||.|||||
RBAM_001110__ 799 GAAATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATAC 848
BSNT_00178___ 849 ATTAATCGGGGCAGGCGGAGCAGAAGGTGCTATTGATGCATCTAATATTT 898
|.|.|||||.||.||.||||||||||||||.|||||.||.||.|||||.|
RBAM_001110__ 849 ACTGATCGGAGCGGGGGGAGCAGAAGGTGCGATTGACGCGTCGAATATCT 898
BSNT_00178___ 899 TAAAACCTTCACTTGCTCGTGGCGAACTCCAATGTATTGGTGCAACGACT 948
|||||||||||||.||.||.||.||.||.|||||.||.||.||.||.||.
RBAM_001110__ 899 TAAAACCTTCACTGGCCCGCGGAGAGCTTCAATGCATCGGCGCGACAACG 948
BSNT_00178___ 949 CTTGATGAGTACCGTAAATATATTGAAAAAGATGCAGCACTGGAACGCCG 998
||||||||.||||||||||||||.||||||||.||.||.||.||.|||||
RBAM_001110__ 949 CTTGATGAATACCGTAAATATATCGAAAAAGACGCCGCTCTCGAGCGCCG 998
BSNT_00178___ 999 TTTTCAGCCGATTCAGGTTGATCAGCCATCTGTAGATGAAAGTATTCAAA 1048
|||.||||||||||||||.||||||||.||.|..||||||||.|||||||
RBAM_001110__ 999 TTTCCAGCCGATTCAGGTGGATCAGCCCTCAGCCGATGAAAGCATTCAAA 1048
BSNT_00178___ 1049 TTTTACAAGGTCTGCGTGACAGATACGAAGCCCACCACCGCGTTTCTATC 1098
|||||.||||.||.||||||.|.||.|||||.||.||||||||.||.||.
RBAM_001110__ 1049 TTTTAAAAGGACTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATT 1098
BSNT_00178___ 1099 ACTGATGATGCCATTGAAGCTGCGGTTAAGCTTTCTGACAGATATATTTC 1148
||.|||||.||.||||||||.|||||.||..|.||.|||.|.||||||||
RBAM_001110__ 1099 ACCGATGAAGCGATTGAAGCGGCGGTAAAATTGTCCGACCGTTATATTTC 1148
BSNT_00178___ 1149 TGACCGCTTCCTTCCGGATAAAGCAATTGACTTGATCGATGAAGCAGGTT 1198
||||||||||||||||||||||||.||.||.||.||.||||||||.||||
RBAM_001110__ 1149 TGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGTT 1198
BSNT_00178___ 1199 CAAAGGTGAGACTGCGCTCATTTACAACGCCTCCTAACTTAAAAGAGCTT 1248
||||.|||.|.||.||.||.||.|||||||||||.|||||||||||||||
RBAM_001110__ 1199 CAAAAGTGCGTCTCCGTTCGTTCACAACGCCTCCGAACTTAAAAGAGCTT 1248
BSNT_00178___ 1249 GAGCAGAAGCTTGATGAGGTTCGTAAAGAGAAGGATGCGGCAGTGCAAAG 1298
||||||||.||.|||||.|||||.||.||.||.||.||.||.||.||.||
RBAM_001110__ 1249 GAGCAGAAACTCGATGAAGTTCGCAAGGAAAAAGACGCTGCCGTTCAGAG 1298
BSNT_00178___ 1299 CCAAGAGTTTGAAAAAGCTGCTTCCTTGCGTGATACTGAACAACGCCTGC 1348
|||.||||||||||||||.||||||.|.||||||||.||.||.||||||.
RBAM_001110__ 1299 CCAGGAGTTTGAAAAAGCGGCTTCCCTTCGTGATACGGAGCAGCGCCTGA 1348
BSNT_00178___ 1349 GCGAGCAAGTAGAGGATACGAAGAAATCATGGAAAGAGAAGCAAGGGCAG 1398
|.||.||.||.||.||.|||||.|||.|.||||||||.||.|||||.|||
RBAM_001110__ 1349 GAGAACAGGTGGAAGACACGAAAAAAACGTGGAAAGAAAAACAAGGCCAG 1398
BSNT_00178___ 1399 GAAAACTCAGAGGTTACTGTGGATGATATTGCGATGGTTGTATCCAGCTG 1448
||.|||||.||.|||.||||.||.|||||.||||||||||||||||||||
RBAM_001110__ 1399 GAGAACTCCGAAGTTTCTGTAGAGGATATCGCGATGGTTGTATCCAGCTG 1448
BSNT_00178___ 1449 GACCGGTGTGCCTGTATCTAAAATCGCCCAAACTGAAACTGATAAGCTTC 1498
||||||.|||||||||||||||||.||||||||.|||||.||||||||||
RBAM_001110__ 1449 GACCGGGGTGCCTGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTC 1498
BSNT_00178___ 1499 TCAATATGGAAAACATTCTTCATTCCCGCGTCATCGGCCAGGATGAAGCA 1548
||||||||||||.||||||.||.||||||||||||||||||||||||||.
RBAM_001110__ 1499 TCAATATGGAAAGCATTCTGCACTCCCGCGTCATCGGCCAGGATGAAGCT 1548
BSNT_00178___ 1549 GTTGTAGCTGTTGCAAAAGCCGTCAGACGTGCGAGAGCAGGATTGAAAGA 1598
||||||||.||||||||.||||||||||||||.|||||.||..||||.||
RBAM_001110__ 1549 GTTGTAGCCGTTGCAAAGGCCGTCAGACGTGCAAGAGCCGGTCTGAAGGA 1598
BSNT_00178___ 1599 TCCTAAACGCCCAATCGGCTCATTCATTTTCTTAGGCCCTACAGGTGTAG 1648
.||.||||||||.||.||.||||||||.|||||||||||||||||.||.|
RBAM_001110__ 1599 CCCGAAACGCCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTTG 1648
BSNT_00178___ 1649 GTAAAACAGAGCTTGCACGAGCACTCGCTGAATCCATTTTTGGTGATGAA 1698
|.||.||||||||.||||||||.||.||.|||||||||||.|||||||||
RBAM_001110__ 1649 GGAAGACAGAGCTGGCACGAGCGCTGGCGGAATCCATTTTCGGTGATGAA 1698
BSNT_00178___ 1699 GAATCCATGATCAGAATTGATATGTCTGAATACATGGAAAAACACTCAAC 1748
|||.|.|||||||||.|.||||||||.|||||||||||.|||||.||.||
RBAM_001110__ 1699 GAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACATTCGAC 1748
BSNT_00178___ 1749 TTCAAGACTTGTTGGTTCACCTCCGGGGTATGTGGGATATGATGAAGGCG 1798
||||.|.|||||.|||||.||||||||||||||.||.|||||||||||||
RBAM_001110__ 1749 TTCACGTCTTGTCGGTTCTCCTCCGGGGTATGTCGGCTATGATGAAGGCG 1798
BSNT_00178___ 1799 GTCAATTGACAGAGAAAGTCAGAAGAAAACCTTACTCTGTCGTGCTTCTT 1848
|.||..|||||||.|||||.|||||||||||||||||||||||.||.|||
RBAM_001110__ 1799 GCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTGTCGTACTGCTT 1848
BSNT_00178___ 1849 GATGAGATCGAGAAAGCGCACCCTGATGTCTTCAATATCCTTCTGCAAGT 1898
|||||.||.||.||||||||.||||||||.||.||.||.||.||||||||
RBAM_001110__ 1849 GATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATTCTCCTGCAAGT 1898
BSNT_00178___ 1899 TCTTGAAGACGGACGATTGACTGATTCTAAAGGACGCACAGTCGATTTCC 1948
.||||||||||||||.|||||||||||.|||||||||||.||.|||||||
RBAM_001110__ 1899 GCTTGAAGACGGACGCTTGACTGATTCAAAAGGACGCACTGTGGATTTCC 1948
BSNT_00178___ 1949 GCAATACCATTCTGATCATGACATCAAACGTCGGAGCAAGTGAGCTGAAA 1998
||||.||.||.|||||.|||||.||||||||||||||.||.|||||||||
RBAM_001110__ 1949 GCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAAA 1998
BSNT_00178___ 1999 CGCAATAAATATGTCGGCTTTAACGTTCAGGATGAAACTCAAAATCATAA 2048
|||||.||||||||.|||||.||.||.|||||||||.|.|||||.|||||
RBAM_001110__ 1999 CGCAACAAATATGTGGGCTTCAATGTGCAGGATGAATCACAAAACCATAA 2048
BSNT_00178___ 2049 AGACATGAAAGACAAAGTGATGGGTGAATTAAAACGAGCGTTCAGACCTG 2098
||||||||||||||||||.|||||.||..|.||.||.||.||||||||||
RBAM_001110__ 2049 AGACATGAAAGACAAAGTCATGGGAGAGCTGAAGCGTGCCTTCAGACCTG 2098
BSNT_00178___ 2099 AGTTCATCAACCGTATCGATGAAATCATTGTCTTCCATTCACTTGAGAAA 2148
||||.||||||||.||.||.|||||.||.||||||||.||.|||||||||
RBAM_001110__ 2099 AGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAA 2148
BSNT_00178___ 2149 AAACATCTTACTGAAATTGTGTCATTAATGTCTGATCAATTAACGAAACG 2198
|||||.|||||.||.||.|||||..|.|||||||||||.|||||.|||||
RBAM_001110__ 2149 AAACACCTTACAGACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACG 2198
BSNT_00178___ 2199 CTTGAAAGAACAAGATCTTTCTATCGAATTGACAGATGCTGCAAAAGCGA 2248
..||||||||||||||||.||||||||..||||.||||||||||||||.|
RBAM_001110__ 2199 TCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGCTGCAAAAGCAA 2248
BSNT_00178___ 2249 AAGTCGCGGAAGAGGGCGTTGACCTGGAATACGGTGCCCGTCCGTTAAGA 2298
||||.||.|||||||||||.||..||||||||||.||.||||||||||||
RBAM_001110__ 2249 AAGTGGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGA 2298
BSNT_00178___ 2299 AGAGCGATCCAAAAACATGTCGAGGATCGTTTATCTGAAGAACTCCTCAG 2348
||||||||.|||||.|||||.|||||.||.|||||.||||||||||||||
RBAM_001110__ 2299 AGAGCGATTCAAAAGCATGTGGAGGACCGGTTATCAGAAGAACTCCTCAG 2348
BSNT_00178___ 2349 AGGAAATATTCATAAAGGACAGCATATTGTTCTTGATGTAGAAGATGGCG 2398
|||.||||||.|||||||.|||||.||||||||||||||.||.||.||||
RBAM_001110__ 2349 AGGCAATATTGATAAAGGCCAGCACATTGTTCTTGATGTTGAGGACGGCG 2398
BSNT_00178___ 2399 AATTTGTCGTAAAAACGACTGCTAAAACGAATTAA 2433
||||||||||||||||.||||||||||||||.|||
RBAM_001110__ 2399 AATTTGTCGTAAAAACAACTGCTAAAACGAACTAA 2433
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