Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00174 and RBAM_001080

See Amino acid alignment / Visit BSNT_00174 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:56
# Commandline: needle
#    -asequence dna-align/BSNT_00174___ctsR.1.9828.seq
#    -bsequence dna-align/RBAM_001080___ctsR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00174___ctsR-RBAM_001080___ctsR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00174___ctsR-RBAM_001080___ctsR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00174___ctsR
# 2: RBAM_001080___ctsR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 465
# Identity:     404/465 (86.9%)
# Similarity:   404/465 (86.9%)
# Gaps:           0/465 ( 0.0%)
# Score: 1776.0
# 
#
#=======================================

BSNT_00174___      1 GTGGGACATAATATTTCTGACATCATTGAACAATATTTAAAACGAGTGTT     50
                     ||||||||||||||||||||||||||||||||.||.||.||||.|||.||
RBAM_001080__      1 GTGGGACATAATATTTCTGACATCATTGAACAGTACTTGAAACAAGTATT     50

BSNT_00174___     51 AGATCAAAATGGCAAGGAAATTTTAGAGATTAAACGAAGTGAAATTGCAG    100
                     |||||||||||||||.||||||||||||||.|||||.||||||||.||.|
RBAM_001080__     51 AGATCAAAATGGCAAAGAAATTTTAGAGATCAAACGCAGTGAAATCGCTG    100

BSNT_00174___    101 ATAAATTTCAATGCGTTCCTTCCCAAATAAATTATGTCATCAACACCAGA    150
                     |||||||||||||.||||||||||||||||||||||||||||||||||||
RBAM_001080__    101 ATAAATTTCAATGTGTTCCTTCCCAAATAAATTATGTCATCAACACCAGA    150

BSNT_00174___    151 TTTACAAGCGAAAGAGGATATATTGTTGAGAGCAAACGCGGGGGCGGCGG    200
                     ||||||||.||||||||||||||||||||.||.|||||.||.||||||||
RBAM_001080__    151 TTTACAAGTGAAAGAGGATATATTGTTGAAAGTAAACGGGGAGGCGGCGG    200

BSNT_00174___    201 TTACATCAGAATCATTAAAATTAAAATGAACAATGAAGTTGTCCTGATCA    250
                     |||.||..|.||.||.||||||||||||||.||.|||||.|||||.||||
RBAM_001080__    201 TTATATTCGTATTATCAAAATTAAAATGAATAACGAAGTCGTCCTCATCA    250

BSNT_00174___    251 ATAATATAATTTCTCAAATTAATACCCATTTGTCTCAAGCAGCCTCTGAT    300
                     |||||||.|||||.||.|||.|||||||.|||||.||.||||||||||||
RBAM_001080__    251 ATAATATTATTTCGCAGATTCATACCCACTTGTCCCAGGCAGCCTCTGAT    300

BSNT_00174___    301 GACATTATTTTAAGGCTATTAGAAGACAAGGTAATTTCAGAAAGAGAAGC    350
                     |||||||||.|.||.||.|||||.|||...||.|||||.|||||||||||
RBAM_001080__    301 GACATTATTCTCAGACTGTTAGAGGACGGAGTTATTTCGGAAAGAGAAGC    350

BSNT_00174___    351 AAAAATGATGGTCAGTGTAATGGACCGCTCAGTTTTACACATTGACTTAC    400
                     .|||||||||||.|||||||||||.||.||||||.||.|.|||||.||.|
RBAM_001080__    351 TAAAATGATGGTGAGTGTAATGGATCGTTCAGTTCTATATATTGATTTGC    400

BSNT_00174___    401 CTGAACGTGATGAATTAAGAGCGAGAATGATGAAGGCAATGCTGACTTCT    450
                     |.|||||.||||||.|||||||.|||||||||||.||||||||.||.|||
RBAM_001080__    401 CCGAACGGGATGAACTAAGAGCCAGAATGATGAAAGCAATGCTCACATCT    450

BSNT_00174___    451 TTAAAATTAAAATAA    465
                     ||||||.||||.|||
RBAM_001080__    451 TTAAAACTAAAGTAA    465


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