Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00129 and RBAM_000850
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:55
# Commandline: needle
# -asequence dna-align/BSNT_00129___pabB.1.9828.seq
# -bsequence dna-align/RBAM_000850___pabB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00129___pabB-RBAM_000850___pabB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00129___pabB-RBAM_000850___pabB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00129___pabB
# 2: RBAM_000850___pabB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1539
# Identity: 1092/1539 (71.0%)
# Similarity: 1092/1539 (71.0%)
# Gaps: 165/1539 (10.7%)
# Score: 4089.5
#
#
#=======================================
BSNT_00129___ 1 TTGGAAGAGAAATTCACTTTTTTCACTCACAACATTGCTTTACAATTAAA 50
RBAM_000850__ 0 -------------------------------------------------- 0
BSNT_00129___ 51 AACAAGTAAAAAAGAAAATAGAGGAATGATACAAATGGCACAACGCAGAC 100
||| ||||||||||||||||
RBAM_000850__ 1 -------------------------ATG------ATGGCACAACGCAGAC 19
BSNT_00129___ 101 CGGCAGGCAAAAAAGTACCTTTTCAAAAAGACTCATTCTTACAACAATTT 150
|||||||.|.||||.||||||||...|||.|..||||.|||||.|.||.|
RBAM_000850__ 20 CGGCAGGAAGAAAAATACCTTTTACGAAACAAGCATTTTTACAGCGATAT 69
BSNT_00129___ 151 GAGAAACTTGCGCAATCCCGAAAACACCATGTACTTCTCGAAAGTGCAAG 200
||.||.|||.||.||||..||||||..|||||.||.||||||||.||.||
RBAM_000850__ 70 GAAAACCTTTCGAAATCGAGAAAACGGCATGTTCTGCTCGAAAGCGCGAG 119
BSNT_00129___ 201 AGGCGGCAGATACAGTATAGCCGGTCTTGATCCAATTGCGACTGTGAAAG 250
|||.||.||||.|||||||||||||||.|||||.||||||.|.||.|.||
RBAM_000850__ 120 AGGGGGAAGATTCAGTATAGCCGGTCTAGATCCGATTGCGTCCGTCAGAG 169
BSNT_00129___ 251 GAAAAGACGGAATAACTACAATTAAGCATGGTGATGAGATGCTGTTTAAA 300
|.|||||||||||.||.||.||.|||||||..|..||||..|||||||||
RBAM_000850__ 170 GGAAAGACGGAATTACAACGATCAAGCATGAGGGGGAGACACTGTTTAAA 219
BSNT_00129___ 301 GAAGGTGATCCATTACGGGCCTTCCACAGCTGGTTTAAAACGCTGGAAAC 350
||||||||.||..|.||||||||.||....||||||..||||||.|.|||
RBAM_000850__ 220 GAAGGTGACCCGCTGCGGGCCTTTCATGAATGGTTTGGAACGCTCGGAAC 269
BSNT_00129___ 351 AGAAACGAATCATGAGTTCCCTGACTTTCAAGGCGGGGCAATCGGGTTTC 400
.|||||.||...||||||.||.||||||||.|||||.||.||.||.|||.
RBAM_000850__ 270 GGAAACAAACGTTGAGTTTCCGGACTTTCAGGGCGGTGCGATTGGTTTTA 319
BSNT_00129___ 401 TCAGCTATGATTACGCACGGTACATTGAAAATTTTAAAATGCTCTCATTA 450
||||.||.||.|||||.||.||.|||||.||||||||.|||||.||.|||
RBAM_000850__ 320 TCAGTTACGACTACGCCCGATATATTGAGAATTTTAAGATGCTGTCGTTA 369
BSNT_00129___ 451 GATGATCTAGAAACACCAGATATTTATTTTCTTGTTTTTGATGATATAGC 500
||||||||.||||||||.||||||||.||||||||||||||||||.|.||
RBAM_000850__ 370 GATGATCTGGAAACACCTGATATTTACTTTCTTGTTTTTGATGATGTGGC 419
BSNT_00129___ 501 AGTTTATGACCATCAAGAAGAGTCTCTATGGCTGATTACTCATGTTAATG 550
.||||||||||||.|.||||||.|..|||||||.|||||.||
RBAM_000850__ 420 CGTTTATGACCATGAGGAAGAGGCGTTATGGCTCATTACCCA-------- 461
BSNT_00129___ 551 GTTCTGATCAGGAAACAGCGGAT---------GTGAAGCTATCTGAGTTA 591
|.||||...||||..||||||| |..|||||.||....|||
RBAM_000850__ 462 -TACTGAAGCGGAAGAAGCGGATCTTGCGGAAGAAAAGCTGTCCCGCTTA 510
BSNT_00129___ 592 GAGCAGATGTGGCTGACTGAGCTTCCCGCTGTCTCTTT------GCGAGA 635
|||...|||||| || ||||| || |||
RBAM_000850__ 511 GAGGGCATGTGG-----TG---TTCCC---------TTCAAACGGCG--- 540
BSNT_00129___ 636 GATGAACC----------CTGAAAC-------AGATGGTTCCTTCGCGGC 668
||.||.|| |||||.| .||.||.||.|.|||.||
RBAM_000850__ 541 GACGAGCCTTTTTCACCGCTGAATCGGAATGGGGACGGATCGTACGCCGC 590
BSNT_00129___ 669 GCCATTTACCGAGGATGGGTTCTCACAAGCTGTAGAGAAAATCAAACAAT 718
.||.||.||.|||||.||.||.|||||.||||||||..||||.|||||||
RBAM_000850__ 591 TCCGTTCACTGAGGAAGGATTTTCACAGGCTGTAGAACAAATTAAACAAT 640
BSNT_00129___ 719 ACATTGCCAGCGGAGATGTGTTTCAAGTCAATCTATCAATAAGGCAGTCA 768
|.||.||.|||||.||||||||.||.||.|||.|.||.||.||||||||.
RBAM_000850__ 641 ATATCGCGAGCGGCGATGTGTTCCAGGTTAATTTGTCCATCAGGCAGTCT 690
BSNT_00129___ 769 CAGTCACTGTCTGCCCACCCATATCAAATTTACAAAACCTTGAGAGAAGT 818
|||||..|.||.|..||.||.|||.|..|.||.|||..|||||||.|.||
RBAM_000850__ 691 CAGTCCTTATCCGTTCATCCGTATGAGGTGTATAAACACTTGAGAAACGT 740
BSNT_00129___ 819 AAATCCTTCTCCTTATATGGCGTATTTAGAAACACCTGATTTCCAAATCA 868
.|||||.||||||||.|||||.|||.|.||.|||||.|..||.|||.|.|
RBAM_000850__ 741 CAATCCGTCTCCTTACATGGCCTATCTCGAGACACCGGGGTTTCAAGTGA 790
BSNT_00129___ 869 TTTGCGGCTCGCCTGAACTGCTTGTCAGCAAA-AAGGGCAAGCTATTAGA 917
|.|||||.|||||.||.||..|.||.| |||| |||||.|||....|.||
RBAM_000850__ 791 TATGCGGGTCGCCGGAGCTATTGGTGA-CAAAGAAGGGGAAGAAGCTTGA 839
BSNT_00129___ 918 GACGAGACCGATTGCGGGCACCCGTTCCAGAGGGAAAACA-AATGAAGAA 966
.|||||.|||||.|||||.||.|||||.||| ||||||.| .|||..|||
RBAM_000850__ 840 AACGAGGCCGATCGCGGGTACGCGTTCAAGA-GGAAAAGACGATGCTGAA 888
BSNT_00129___ 967 GACGAGGTGCTT--GCAAACGAATTGATACACAATGAAAAAGAACGCGCG 1014
|||.|| |||| ||..|.|||||.||.|||||.|||||||||||.|||
RBAM_000850__ 889 GACAAG--GCTTTGGCTGATGAATTAATTCACAACGAAAAAGAACGTGCG 936
BSNT_00129___ 1015 GAACATGTCATGCTGGTTGATCTTGAGCGAAATGATCTGGGAAGAGTATC 1064
|||||.||||||||.||||||||||||||.||||||||.||..|.|||||
RBAM_000850__ 937 GAACACGTCATGCTTGTTGATCTTGAGCGCAATGATCTCGGGCGCGTATC 986
BSNT_00129___ 1065 GCGTTACGGGTCTGTGCGCGTAAATGAATTCATGGCAATTGAAAAATACT 1114
|||.|||||.||.|||||.||.||.|||||.|||||.||.|||||.||.|
RBAM_000850__ 987 GCGCTACGGCTCCGTGCGGGTTAACGAATTTATGGCGATCGAAAAGTATT 1036
BSNT_00129___ 1115 CGCATGTAATGCACATTGTGTCTAATGTCCAAGGTGAACTGCAGGATGGG 1164
|.||.||.|||||.||.|||||.||.||.||.||.|||||||||||.||.
RBAM_000850__ 1037 CCCACGTCATGCATATCGTGTCAAACGTACAGGGGGAACTGCAGGACGGA 1086
BSNT_00129___ 1165 TATGATGCTGTTGATATTATTCATGCTGTGTTTCCC-GGAGGAACCATTA 1213
|||||.||....||.|||||||||||.|| |||||| ||.||.|||||.|
RBAM_000850__ 1087 TATGACGCGACAGACATTATTCATGCGGT-TTTCCCGGGGGGCACCATCA 1135
BSNT_00129___ 1214 CTGGTGCACCGAAAGTAAGAACGATGGAAATAATAGAAGAACTTGAGCCG 1263
|.||.||.||.|||||.||||||||||||||.||||||||.|||||||||
RBAM_000850__ 1136 CGGGAGCGCCCAAAGTGAGAACGATGGAAATTATAGAAGAGCTTGAGCCG 1185
BSNT_00129___ 1264 ACACGCCGGGGGCTTTATACTGGATCTATAGGATGGTTTGGATATAATCA 1313
|||.|.||||||||||||||||||||||||||.|||||.|||| |||
RBAM_000850__ 1186 ACAAGACGGGGGCTTTATACTGGATCTATAGGCTGGTTCGGAT----TCA 1231
BSNT_00129___ 1314 ----CGATCTGCAGTTTAATATCGTCATTCGAACCATTTATGCAACCGGA 1359
.|||.||||||||||.||.||.||.||.||.||.||||||.||||.
RBAM_000850__ 1232 ACGGAGATTTGCAGTTTAACATTGTGATCCGGACGATCTATGCAGCCGGC 1281
BSNT_00129___ 1360 GGGCAGGCATTTATGCAGTCCGGCGCAGGAGTTGTGATTGATTCTGTTCC 1409
||.||.||.||.|||||||||||.||||||||.||.||||||||.|||||
RBAM_000850__ 1282 GGACATGCTTTCATGCAGTCCGGAGCAGGAGTAGTCATTGATTCGGTTCC 1331
BSNT_00129___ 1410 GAAGCACGAATACAAGGAATCATTCAAAAAAGCTTTTGCGATGCAAAGAG 1459
||||||.||||||||||||||.|||||||||||||||||.|||.|||..|
RBAM_000850__ 1332 GAAGCATGAATACAAGGAATCGTTCAAAAAAGCTTTTGCAATGAAAAAGG 1381
BSNT_00129___ 1460 CATTAGAGCTGAGCAAAGAAGAGAC-AAAAATTAGATGA 1497
|.||||||||||||.|||||||||| |||||||||
RBAM_000850__ 1382 CGTTAGAGCTGAGCGAAGAAGAGACAAAAAATTAG---- 1416
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