Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00115 and RBAM_000750
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:54
# Commandline: needle
# -asequence dna-align/BSNT_00115___spoIIE.1.9828.seq
# -bsequence dna-align/RBAM_000750___spoIIE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00115___spoIIE-RBAM_000750___spoIIE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00115___spoIIE-RBAM_000750___spoIIE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00115___spoIIE
# 2: RBAM_000750___spoIIE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2524
# Identity: 2004/2524 (79.4%)
# Similarity: 2004/2524 (79.4%)
# Gaps: 65/2524 ( 2.6%)
# Score: 7925.0
#
#
#=======================================
BSNT_00115___ 1 ATGAGAGGAATGGAAAAAGCAGAAAGAAGAGTGAACGGGCCAATGGCGGG 50
|||||||||||.||||||||||||||||||||.||||||||
RBAM_000750__ 1 ---------ATGGAAAAAGCGGAAAGAAGAGTGAACGGGCCGATGGCGGG 41
BSNT_00115___ 51 ACAAGCTTTGGAAAAACTCCAATCGTTTTTT-AACAGG-GGCACGAAGCT 98
|||||||.||||||||||.|||||||||||| ||.||| |||| ||||
RBAM_000750__ 42 ACAAGCTCTGGAAAAACTGCAATCGTTTTTTGAAAAGGCGGCA--AAGC- 88
BSNT_00115___ 99 GGTGAC---TCATCATTTGCATTCACTGTTTTTCTATAAAGGATTCATTT 145
|.|| .|||||...|||||||||.|||||||||||.||.|||||||
RBAM_000750__ 89 --TTACAGTCCATCAAGCGCATTCACTTTTTTTCTATAAGGGTTTCATTT 136
BSNT_00115___ 146 ATGTTGTCATCGGATTTTTGCTTGGACGGGCTTTCATATTATCCGAGGTG 195
||||.||.|||||.|||||.|||||||||||||||||||||||.|||||.
RBAM_000750__ 137 ATGTCGTGATCGGTTTTTTACTTGGACGGGCTTTCATATTATCTGAGGTT 186
BSNT_00115___ 196 CTTCCTTTCGCACTTCCTTTCTTTGGAGCGATGCTTCTAATCAGAAGAGA 245
|||||.||.||.||.||.||.||.||||||||||||.|.||.||||||||
RBAM_000750__ 187 CTTCCGTTTGCGCTGCCGTTTTTCGGAGCGATGCTTTTGATTAGAAGAGA 236
BSNT_00115___ 246 CAAAGCGTTTTATGCGGTTTTGGCTG----TGCTTGCAGGTGCGCTGACC 291
.|||||.||.||||| |||.||| |.|||||.||.||..|.|||
RBAM_000750__ 237 TAAAGCCTTCTATGC----TTGTCTGTCTTTACTTGCGGGCGCTTTAACC 282
BSNT_00115___ 292 ATATCTCCAAAGCACTCATTGCTCATACTGGCGGCATTGCTGGCATTCTT 341
||.||.||.||.|||||.||..|.||.||..|.||.| ||||..||||
RBAM_000750__ 283 ATTTCGCCGAAACACTCTTTATTGATTCTCACAGCTT---TGGCCGTCTT 329
BSNT_00115___ 342 C---GTATTTTCTAAAGT-GGCTGCCTTCAT-TACCG---ACGATCGTGT 383
| .|||||||.|||.| || |.||| ||.|| |.||.||.||
RBAM_000750__ 330 CACTTTATTTTCAAAAATCGG-----TACATATATCGTGCAGGACCGGGT 374
BSNT_00115___ 384 TAAAGCGCTCCCGATTGTCGTGTTCTTCTCCATGGCTGCAGCAAGAGCCG 433
.||...|||.|||||.||.|||||.|||||.||||||||.||.|||..||
RBAM_000750__ 375 GAAGATGCTGCCGATCGTGGTGTTTTTCTCTATGGCTGCCGCGAGAATCG 424
BSNT_00115___ 434 GGTTTGTTTATGCCCAAAATGGCGTATTTACAACCTATGATTATGTAATG 483
|.|||||||||....|||..||||..|||||.||||||||||||||.|||
RBAM_000750__ 425 GATTTGTTTATTTTGAAAGCGGCGCTTTTACCACCTATGATTATGTGATG 474
BSNT_00115___ 484 GCTATCGTTGAGGCTGGACTATCGTTTATCTTAACACTGATTTTCCTTCA 533
|||.|.||.|||||.||.||..|.|||||.||.||.|||||.||..|.||
RBAM_000750__ 475 GCTGTTGTCGAGGCGGGCCTGGCCTTTATTTTGACGCTGATCTTTTTACA 524
BSNT_00115___ 534 GAGCCTTCCGATTTTTACTGTGAAAAAAGTGAAACAATCATTAAAAATAG 583
.|||||.||||||||.||..|.|||||||||||.|||||.||||||||||
RBAM_000750__ 525 AAGCCTGCCGATTTTCACGATCAAAAAAGTGAAGCAATCGTTAAAAATAG 574
BSNT_00115___ 584 AGGAAATCATTTGCTTTATGATTCTT-ATTGCCTCTGTTTTAACGGGGCT 632
|.||||||||.||.||||||| |||| ||.||.||.||||||||.|||||
RBAM_000750__ 575 AAGAAATCATCTGTTTTATGA-TCTTGATCGCATCCGTTTTAACCGGGCT 623
BSNT_00115___ 633 GGCTGGCTTGTCCTACCAAGGGATGCAGGCAGAACATATATTGGCTCGTT 682
.||.||..|.||.|..||.||.||||||||.||||||||..||||.||.|
RBAM_000750__ 624 TGCGGGTGTTTCATTTCAGGGAATGCAGGCTGAACATATCCTGGCCCGCT 673
BSNT_00115___ 683 ATGTTGTGTTGAGTTTTTCCTTTATTGGCGGAGCAAGCATCGGCTGTACG 732
||||.|||.||||||||||||||.|.|||||.||||||||||||||||||
RBAM_000750__ 674 ATGTCGTGCTGAGTTTTTCCTTTGTCGGCGGGGCAAGCATCGGCTGTACG 723
BSNT_00115___ 733 GTTGGGGTTGTGACCGGCCTGATTCT-TGGCTTGGCGAATATCGGAAACC 781
||.||.|||||||||||.|||||.|| .||||| |||||||||||.||||
RBAM_000750__ 724 GTCGGTGTTGTGACCGGACTGATCCTCGGGCTT-GCGAATATCGGGAACC 772
BSNT_00115___ 782 TATATCAAATGAGTCTGCTTGCTTTTTCC-GGTTTATTGGGCGGTTTGCT 830
|.||||||||||||||||||||.|||||| ||.||.|| |||||..||||
RBAM_000750__ 773 TCTATCAAATGAGTCTGCTTGCGTTTTCCGGGCTTCTT-GGCGGGCTGCT 821
BSNT_00115___ 831 GAAGGAAGGGAAAAAAGCGGGTGCAGCAATTGGTT---TGATCGTTGGAT 877
|||.|||||.||.|||||.||.||.|||.|.||.| ||||| ||.|
RBAM_000750__ 822 GAAAGAAGGAAAGAAAGCCGGAGCCGCAGTCGGGTTAGTGATC---GGCT 868
BSNT_00115___ 878 CACTTCTTATATCTTTATATGGTGAAGGCTCTGCCGGTCTGATGACAACG 927
||||.||.||.||.||||||||.|||||.||||||||..|.|||||.||.
RBAM_000750__ 869 CACTGCTGATTTCATTATATGGAGAAGGGTCTGCCGGATTAATGACCACT 918
BSNT_00115___ 928 CTCTATGAGTCATTAATCGCAGTCGGCCTGTTTTTGCTCACACCTCAATC 977
||.|||||.||.||.||.||.||.|...||||||||.|.||.||.|||||
RBAM_000750__ 919 CTTTATGAATCTTTGATTGCCGTTGTTTTGTTTTTGATTACGCCCCAATC 968
BSNT_00115___ 978 TATTACGAGGAAAGTGGCGAGATATATTCCGGGAACTGTCGAGCATCTTC 1027
.|||||||..||.||||||.||||.||.|||||.||||..|||||...||
RBAM_000750__ 969 GATTACGAAAAAGGTGGCGCGATACATACCGGGCACTGCTGAGCACAGTC 1018
BSNT_00115___ 1028 AAGAGCAACAGCAATACGCTAGAAAAATCCGTGATGTCACTGCTCAGAAG 1077
|.||.||.|||||.|||||.||.||||||.|.||||||||.||.|||||.
RBAM_000750__ 1019 AGGAACAGCAGCAGTACGCGAGGAAAATCAGAGATGTCACCGCCCAGAAA 1068
BSNT_00115___ 1078 GTAGACCAATTCTCCAATGTATTTCACGCGCTGTCTGAAAGCTTTGCAAC 1127
||||||||.|||||||||||.|||||.||..||||.||.|||||.||.||
RBAM_000750__ 1069 GTAGACCAGTTCTCCAATGTGTTTCATGCCTTGTCGGAGAGCTTCGCCAC 1118
BSNT_00115___ 1128 CTTTTATCAAG----CATCAGACGAACAGACAGATGACAGCGAAGTTGAT 1173
||||.||| || |.||.||.||.|||.|.||.||..|.|||||.|||
RBAM_000750__ 1119 CTTTCATC-AGACGTCTTCCGATGAGCAGGCGGAAGAAGGGGAAGTGGAT 1167
BSNT_00115___ 1174 CTGTTCTTAAGCAAAATCACGGAGCATTCCTGCCAGACGTGCTACAAGAA 1223
||.||.||||||||||||||.||||||||||||||..|.|||||.|||||
RBAM_000750__ 1168 CTCTTTTTAAGCAAAATCACCGAGCATTCCTGCCAATCCTGCTATAAGAA 1217
BSNT_00115___ 1224 AAACAGGTGCTGGGTACAGAACTTTGATAAAACATATGACTTAATGAAAC 1273
||.||..||||||||.||.|||||||||||||||||||||||||||||||
RBAM_000750__ 1218 AAGCAAATGCTGGGTTCAAAACTTTGATAAAACATATGACTTAATGAAAC 1267
BSNT_00115___ 1274 AAGTTATGCTTGAAACAGAGGAAAAAGAATATGCATCAAACCGAAGGCTG 1323
|||||||||.|||||||||.||||||.|.|||||.||||||||.||..|.
RBAM_000750__ 1268 AAGTTATGCATGAAACAGAAGAAAAACAGTATGCCTCAAACCGCAGATTA 1317
BSNT_00115___ 1324 AAAAAAGAGTTTCAACAGTATTGTTCTAAATCCAAGCAGGTTGAAGAGCT 1373
|||||.||||||||||||.|.|||||.|||||||..|||||.||||||||
RBAM_000750__ 1318 AAAAAGGAGTTTCAACAGCACTGTTCCAAATCCAGACAGGTGGAAGAGCT 1367
BSNT_00115___ 1374 GATTGAGGATGAGCTCGCACATCATCATGCCCATTTGACACTCAAGAAAA 1423
|||||||||.||.||.||.||.|||||.||||||.|||||||.||||.||
RBAM_000750__ 1368 GATTGAGGACGAACTTGCCCACCATCACGCCCATCTGACACTGAAGAGAA 1417
BSNT_00115___ 1424 AAGTCCAAGACAGCAGGCGCCTTGTTGCTGAACAGCTTTTAGGCGTTTCT 1473
||||.||.||||||||..|.||||||||.||.|||||.||.||.||||||
RBAM_000750__ 1418 AAGTTCAGGACAGCAGAAGGCTTGTTGCCGAGCAGCTGTTGGGGGTTTCT 1467
BSNT_00115___ 1474 GAGGTTATGGCCGACTTTTCTCGGGAAATAAAAAGAGAGCGAGAACAGCA 1523
|||||.|||||.|||||||||||||||||||||.|.|||.|.||.|||||
RBAM_000750__ 1468 GAGGTCATGGCGGACTTTTCTCGGGAAATAAAACGGGAGAGGGAGCAGCA 1517
BSNT_00115___ 1524 CTTTCTGCAGGAAGAGCAAATCATAGAAGCGCTTCAGCATTTCGGAATTG 1573
.|||.|.||||||||.|||||.|||||.||||||||||||||.|||||.|
RBAM_000750__ 1518 TTTTATTCAGGAAGAACAAATGATAGAGGCGCTTCAGCATTTTGGAATCG 1567
BSNT_00115___ 1574 AGATTCAGCATGTCGAGATCTATAGTCTT-GAACAAGGAAATATCGATAT 1622
|||||||||||||||||||.||.|| ||| ||.||.||.|||||.|||||
RBAM_000750__ 1568 AGATTCAGCATGTCGAGATATACAG-CTTGGAGCAGGGCAATATTGATAT 1616
BSNT_00115___ 1623 TGAAATGACCATTCCGTTCAGC---GGACATGGAGAAAGTGAAAAAATCA 1669
.||||||||.||.||||||||| |||||.||.||.|||||.|||||.|
RBAM_000750__ 1617 CGAAATGACAATCCCGTTCAGCGGAGGACACGGCGAGAGTGAGAAAATTA 1666
BSNT_00115___ 1670 TTGCTCCTATGCTTTCTGACATTCTGGAGGAACAAATTCTTGTGAAAGCC 1719
|.||.||.|||||.|||||||||||.|||||.||.||.|||||.|||..|
RBAM_000750__ 1667 TCGCCCCGATGCTGTCTGACATTCTTGAGGAGCAGATACTTGTCAAAAGC 1716
BSNT_00115___ 1720 GAACAGCACTCTCCGCATCCGAATGGATACAGCCATGTCGCCTTTGGATC 1769
|||||||||||..|.|||||||||||.||||||||||||||.||.||.||
RBAM_000750__ 1717 GAACAGCACTCGACTCATCCGAATGGCTACAGCCATGTCGCGTTCGGTTC 1766
BSNT_00115___ 1770 AACAAAATCATACAGGGTGTCCACGGGAGCTGCTCACGCTGCGAAGGGCG 1819
.||.||.||.|||.||||.||.||.||.||.|||||.||.||.||.||||
RBAM_000750__ 1767 GACCAAGTCGTACCGGGTATCGACAGGCGCGGCTCATGCGGCAAAAGGCG 1816
BSNT_00115___ 1820 GCGGCCTTGTCTCCGGTGACAGCTACAGCATGATGGAGCTTGGAGCCAGA 1869
||||||||||||||||.||||||||||||||||||||.||.||.||.|||
RBAM_000750__ 1817 GCGGCCTTGTCTCCGGCGACAGCTACAGCATGATGGAACTGGGGGCGAGA 1866
BSNT_00115___ 1870 AAATATGCTGCAGCAATCAGTGACGGAATGGGCAATGGCGCAAGAGCGCA 1919
||.|||||.||.||.|||||||||||.|||||||||||.||.||.||.||
RBAM_000750__ 1867 AAGTATGCGGCCGCGATCAGTGACGGCATGGGCAATGGGGCGAGGGCCCA 1916
BSNT_00115___ 1920 CTTTGAAAGCAATGAAACGATCAAGCTTCTTGAAAAAATCCTTGAATCGG 1969
.|.|||.||||||||||||||.|||||.||.||||||||.||.|||||.|
RBAM_000750__ 1917 TTATGAGAGCAATGAAACGATTAAGCTGCTCGAAAAAATTCTCGAATCAG 1966
BSNT_00115___ 1970 GCATTGATGAAAAAATAGCAATTAAAACGATCAACAGCATACTGTCTCTA 2019
|.|||||||||||||||||.||.||||||||||||||.||.||||||.||
RBAM_000750__ 1967 GTATTGATGAAAAAATAGCGATAAAAACGATCAACAGTATTCTGTCTTTA 2016
BSNT_00115___ 2020 AGGACAACTGACGAAATATATTCCACGCTTGACCTATCTATTATCGATCT 2069
.||||.||.||||||||.||.||.||.||.||.||.|||||.||.|||||
RBAM_000750__ 2017 CGGACGACAGACGAAATCTACTCAACTCTCGATCTTTCTATCATTGATCT 2066
BSNT_00115___ 2070 TCAAGATGCCAGCTGTAAATTTTTGAAGGTTGGATCGACGCCCAGCTTTA 2119
|||.|||||.|||||.|||||.||||||||.||.||.|||||.||.||||
RBAM_000750__ 2067 TCAGGATGCAAGCTGCAAATTCTTGAAGGTCGGTTCAACGCCGAGTTTTA 2116
BSNT_00115___ 2120 TCAAACGGGGTGACCAGGTCATGAAAGTTCAAGCGAGCAATCTGCCAATC 2169
||||.|||||.||.||.|||||||||||.||.||.|||||||||||.|||
RBAM_000750__ 2117 TCAAGCGGGGAGATCAAGTCATGAAAGTGCAGGCCAGCAATCTGCCGATC 2166
BSNT_00115___ 2170 GGTATTATTAATGAATTCGATGTGGAGGTTGTGAGTGAACAGCTGAAAGC 2219
||.||.||.||||||||.||||||||||||||.|||||||||.|.|||||
RBAM_000750__ 2167 GGCATCATCAATGAATTTGATGTGGAGGTTGTAAGTGAACAGTTAAAAGC 2216
BSNT_00115___ 2220 GGGTGACCTCTTAATTATGATGAGTGATGGCATTTTTGAGGGGCCTAAGC 2269
|||.||.||..|..|.|||||||||||.||.||||||||.|||||.||||
RBAM_000750__ 2217 GGGAGATCTGCTCGTCATGATGAGTGACGGTATTTTTGAAGGGCCGAAGC 2266
BSNT_00115___ 2270 ATGTGGAAAATCACGACTTATGGATGAAACGTAAAATGAAAGGGTTGAAA 2319
|.||.|||||.||||||.|.|||||||||||.||||||||||||.|||||
RBAM_000750__ 2267 ACGTTGAAAACCACGACCTGTGGATGAAACGGAAAATGAAAGGGCTGAAA 2316
BSNT_00115___ 2320 ACAAATGACCCGCAGGAGATTGCCGATTTGCTTATGGAAGAAGTCATCCG 2369
||..|.|||||||||||.||.||.|||.|..|.||||||||.||||||.|
RBAM_000750__ 2317 ACCGAAGACCCGCAGGAAATCGCTGATATATTAATGGAAGAGGTCATCAG 2366
BSNT_00115___ 2370 CACAAGATCCGGCCAAATTGAGGACGATATGACTGTTGTTGTCGTCCGGA 2419
.||..|.|||||||||||.||.|||||||||||.||.|||||.|||||||
RBAM_000750__ 2367 AACGCGTTCCGGCCAAATCGAAGACGATATGACAGTGGTTGTTGTCCGGA 2416
BSNT_00115___ 2420 TTGATCACAATACACCGAAGTGGGCATCCATTCCTGTTCCGGCAATCTTT 2469
||||||||||.||.|||||.|||||.|||||.||.||.|||||.||.||.
RBAM_000750__ 2417 TTGATCACAACACGCCGAAATGGGCTTCCATACCGGTACCGGCGATTTTC 2466
BSNT_00115___ 2470 CAAAACAAACAAGAAATTTCATAA 2493
|||||.|||.|.||.|||||.|||
RBAM_000750__ 2467 CAAAATAAAAAGGAGATTTCTTAA 2490
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