Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00104 and RBAM_000720

See Amino acid alignment / Visit BSNT_00104 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:53
# Commandline: needle
#    -asequence dna-align/BSNT_00104___yabR.1.9828.seq
#    -bsequence dna-align/RBAM_000720___yabR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00104___yabR-RBAM_000720___yabR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00104___yabR-RBAM_000720___yabR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00104___yabR
# 2: RBAM_000720___yabR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 387
# Identity:     369/387 (95.3%)
# Similarity:   369/387 (95.3%)
# Gaps:           0/387 ( 0.0%)
# Score: 1773.0
# 
#
#=======================================

BSNT_00104___      1 ATGTCGATTGAAGTTGGCAGCAAGTTGCAAGGGAAAATTACAGGTATTAC     50
                     ||||||||||||||||||||||||||||||||||||||.|||||||||||
RBAM_000720__      1 ATGTCGATTGAAGTTGGCAGCAAGTTGCAAGGGAAAATAACAGGTATTAC     50

BSNT_00104___     51 AAATTTTGGAGCATTTGTTGAATTGCCTGGAGGCTCAACCGGTCTCGTTC    100
                     ||||||.|||||||||||||||||||||||||||||||||||||||||||
RBAM_000720__     51 AAATTTCGGAGCATTTGTTGAATTGCCTGGAGGCTCAACCGGTCTCGTTC    100

BSNT_00104___    101 ACATTAGTGAGGTAGCTGATAATTATGTCAAAGACATTAACGACCACTTA    150
                     |.||.|||||||||||.|||||||||||.||||||||||||||.||.|||
RBAM_000720__    101 ATATCAGTGAGGTAGCCGATAATTATGTTAAAGACATTAACGAGCATTTA    150

BSNT_00104___    151 AAAGTCGGCGACCAAGTTGAAGTGAAAGTCATCAACGTTGAAAAAGACGG    200
                     |||||||||||.||||||||||||||||||||||||||||||||||||||
RBAM_000720__    151 AAAGTCGGCGATCAAGTTGAAGTGAAAGTCATCAACGTTGAAAAAGACGG    200

BSNT_00104___    201 GAAAATTGGTTTATCTATTAAAAAAGCTAAAGACCGTCCGCAAGCCAGAC    250
                     |||||||||||||||.||||||||||||||||||||||||||||||||||
RBAM_000720__    201 GAAAATTGGTTTATCAATTAAAAAAGCTAAAGACCGTCCGCAAGCCAGAC    250

BSNT_00104___    251 CTAGAAATGATTTCCGTCCGAAAGAATCTTTTGAACAGAAAATGAATAAG    300
                     ||||||||||||||||||||||||||||||||||||||||||||||.|||
RBAM_000720__    251 CTAGAAATGATTTCCGTCCGAAAGAATCTTTTGAACAGAAAATGAACAAG    300

BSNT_00104___    301 TTTTTAAAAGACAGCGAAGATCGCTTGTCATCTTTAAAACGCAATACGGA    350
                     |||.|.|||||.||||||||.|||||.||||||||||||||.||.|||||
RBAM_000720__    301 TTTCTTAAAGATAGCGAAGACCGCTTATCATCTTTAAAACGAAACACGGA    350

BSNT_00104___    351 ATCAAAACGTGGAGGGCGCGGAGCAAGAAGAGGATAA    387
                     |||||||||||||||||||||||||||||||||||||
RBAM_000720__    351 ATCAAAACGTGGAGGGCGCGGAGCAAGAAGAGGATAA    387


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.