Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00096 and RBAM_000660

See Amino acid alignment / Visit BSNT_00096 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:53
# Commandline: needle
#    -asequence dna-align/BSNT_00096___yabM.1.9828.seq
#    -bsequence dna-align/RBAM_000660___yabM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00096___yabM-RBAM_000660___yabM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00096___yabM-RBAM_000660___yabM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00096___yabM
# 2: RBAM_000660___yabM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1700
# Identity:    1106/1700 (65.1%)
# Similarity:  1106/1700 (65.1%)
# Gaps:         220/1700 (12.9%)
# Score: 3230.5
# 
#
#=======================================

BSNT_00096___      1 ATGGACGATTCAATAGGCGTTAAACGGCATTGGATTTGGCAGGGGGCTTT     50
                     |||.||||||||.|.||||..||.|||||.|.|...|||.|.||.|||||
RBAM_000660__      1 ATGAACGATTCAGTTGGCGCCAAGCGGCAATCGGCATGGAAAGGTGCTTT     50

BSNT_00096___     51 TGTTTTAATTCTGGCAGGCGTCATCACAAAAATTTTAAGCGCTGTTTACA    100
                     |||..|..|..|.||.||..||.|.||.||.||.||||||||.||.||||
RBAM_000660__     51 TGTGCTCGTCGTTGCGGGTATCGTAACGAAGATATTAAGCGCCGTGTACA    100

BSNT_00096___    101 GAGTCCCGTTTCAAAACATTGTCGGCGATGTTGGATTTTATATATATCAG    150
                     |.||.||.|||||.||.||||||||.||.||.||.|||||.||.||||||
RBAM_000660__    101 GGGTTCCTTTTCAGAATATTGTCGGTGACGTCGGGTTTTACATTTATCAG    150

BSNT_00096___    151 CAGGTATATCCCTTTCTTGGTATTGCGGTCATGCTGTCCACATCAGGATT    200
                     |||||.|||||.|||.|.||.||.||||||||||||||.|||||.||.||
RBAM_000660__    151 CAGGTGTATCCGTTTTTAGGGATCGCGGTCATGCTGTCAACATCCGGTTT    200

BSNT_00096___    201 TCCAGTCATTATTTCAAAGCTGATGAATGATTATAGTGAAAAAAATCAT-    249
                     |||.||.||.||.|||||..|.|||||.||||||||.|      ||||| 
RBAM_000660__    201 TCCGGTAATCATCTCAAAATTAATGAACGATTATAGCG------ATCATA    244

BSNT_00096___    250 --CACACCATATTAAAAATATCAGCGTTGTTTTTGTCTTTAA------TC    291
                       ||.|..|||.|.|||||.||  ||...|||.||||    |      .|
RBAM_000660__    245 AACAAAAAATAATGAAAATTTC--CGCCCTTTATGTC----ACGGCGGCC    288

BSNT_00096___    292 GGTATTTTATTATTTCTT-TGTTT------ATATCTG-------GGTGCT    327
                     ||         |.||.|| |||||      ||.|.||       ||.||.
RBAM_000660__    289 GG---------ACTTGTTCTGTTTGCGCTCATGTATGCCGGCGCGGCGCC    329

BSNT_00096___    328 GTT--CCTATTGCACTCTTTATGGGGGATTCGCATCTAGCCGTGT-----    370
                     |||  ||..|       ||||||||.||..|.|     |||.|||     
RBAM_000660__    330 GTTGGCCGGT-------TTTATGGGTGACGCCC-----GCCTTGTGATGC    367

BSNT_00096___    371 TAATTCAA--GTGGCCGCATGCGCGTTTC-TGCTGTTCCCATTTGTCGCG    417
                     |.||  ||  ||.||.||.|.||| |||| |.|||||.||.|||   .||
RBAM_000660__    368 TGAT--AAGGGTCGCGGCGTTCGC-TTTCATACTGTTTCCGTTT---ACG    411

BSNT_00096___    418 TTGCTTAGAGGCGGTTTTCAGGGGCG--------------GCACGAAATG    453
                     |          ||||||||.|||| |              |||.||.|||
RBAM_000660__    412 T----------CGGTTTTCCGGGG-GTATTTCCAAGGTGTGCATGATATG    450

BSNT_00096___    454 CTCCCTTCAGCCTTATCACAGATGACAGAGCAGTTTCTGCGTGTTGCGGT    503
                     .|.||.|||||||||||.|||||.||.||.|||.||||.||.||.|||||
RBAM_000660__    451 ATGCCGTCAGCCTTATCCCAGATTACGGAACAGCTTCTTCGCGTGGCGGT    500

BSNT_00096___    504 GCTCTTGGGTTTATCATTTTGGCTCGTGAAAAAGGGAGCCTCGCTTTATA    553
                     |||..|.||||||||.||.|||||..||||||  |..|||...|.|||||
RBAM_000660__    501 GCTTCTCGGTTTATCCTTCTGGCTTTTGAAAA--GCGGCCGTTCATTATA    548

BSNT_00096___    554 CTGCG---GGAGCGGCAGCCGCTTCAGGCTCTCTTGCTGGAAGTTTGGTT    600
                     | |||   ||.||||..||.|||||.||.||..||||.|||||.||||..
RBAM_000660__    549 C-GCGGCTGGTGCGGGGGCGGCTTCGGGATCAATTGCCGGAAGCTTGGCG    597

BSNT_00096___    601 G-CATTGGTGATACTGGGGGTTTTTTGGTTCA-AAACGAAAAGAGAAAAC    648
                     | |.||.||| ||.|||..|||||.||||  | ||.||..|||   ||||
RBAM_000660__    598 GCCCTTTGTG-TATTGGCTGTTTTCTGGT--ATAAGCGGGAAG---AAAC    641

BSNT_00096___    649 CAA-----ACGGATAGG-CAAAACGAAAATGTCATCACAACAAAAGAATT    692
                     |||     ||||  .|| ||.|.|||||..|.|.||           |||
RBAM_000660__    642 CAAGAAAGACGG--CGGACATATCGAAACGGCCGTC-----------ATT    678

BSNT_00096___    693 G-ACGAAAAAACTGCTTTTATATTCGGTTACAATTTGTGTAAGCAGTTTG    741
                     | |  |||||.|||||..|.|||||.||.||.||.|||.|.||||||.|.
RBAM_000660__    679 GTA--AAAAAGCTGCTGCTTTATTCAGTCACCATCTGTATCAGCAGTGTA    726

BSNT_00096___    742 C---TGCTTTTGTTTATCCAGCTTGTTGATGCTTTGAATTTATATGCATT    788
                     |   ||||||||   ||.||||||||.||.||.||.||.||||||.||.|
RBAM_000660__    727 CTCATGCTTTTG---ATTCAGCTTGTAGACGCCTTAAACTTATATTCACT    773

BSNT_00096___    789 GCTTTCA-----GGTGGTGAGGCAAGCGAAGAAGCAAAACGCCTGAAGGG    833
                     |||||||     |..||.|||.||.||     .||.||||..|||||.||
RBAM_000660__    774 GCTTTCAGACGGGACGGAGAGTCATGC-----CGCGAAACAGCTGAAAGG    818

BSNT_00096___    834 GATCTATGATCGGGGACAACCGTTGCTGCAGCTCGGCTCCGTTTTTGCCG    883
                     .||.|||||.||.|||||.|||.|.||.|||||.||..||||.||||||.
RBAM_000660__    819 CATATATGACCGCGGACAGCCGCTCCTTCAGCTGGGAACCGTGTTTGCCA    868

BSNT_00096___    884 TAAGCATTGCGACGTCACTCGTTCCGTATATTTCTATGGCTGTAAAAAAC    933
                     |.||.||.||..|||||.|.|||||.|..|||||.|..||.||..|..|.
RBAM_000660__    869 TCAGTATCGCCGCGTCATTGGTTCCTTCAATTTCAAAAGCGGTGCATGAG    918

BSNT_00096___    934 AAAGAGCTGAAGATCATGAAAGAAAAA-----ATCA--CGTCATCTTTGA    976
                     ||..|.|.|...|||||.|||||.|||     ||||  ||||       |
RBAM_000660__    919 AATAACCCGTTTATCATAAAAGAGAAAGCGACATCAGCCGTC-------A    961

BSNT_00096___    977 AACTATGCCTTGTGCTCGGTACAGGCGCATCGGTTGGGTTGATTTGCATT   1026
                     |.||.|||||||.|.|.||.|..||.|||||.|..|||.|..||||||||
RBAM_000660__    962 AGCTCTGCCTTGCGGTAGGGATCGGTGCATCAGCCGGGCTTTTTTGCATT   1011

BSNT_00096___   1027 CTAAAGCCGGTAAATATCATGCTGTTTCAAAATGGAGAAGGGA--CAGGT   1074
                     .||.|||||||.|||||||||||.||.|||||..|.||.||||  |||  
RBAM_000660__   1012 TTAGAGCCGGTGAATATCATGCTTTTCCAAAACAGTGAGGGGACGCAG--   1059

BSNT_00096___   1075 GCGTTACAAGTATTTAGCTGTTCCATTTTGTTTGCATCTATGGCGGTAAC   1124
                     .|.||||||.||||.||||..||.||.||.|||||.||.||.|||.|.||
RBAM_000660__   1060 ACCTTACAAATATTCAGCTTATCTATCTTTTTTGCCTCGATTGCGCTTAC   1109

BSNT_00096___   1125 GGCAGCGGC-AGTCTTACAGGGAGCGGGGTACACAGTTTTTCCTGCGATA   1173
                     .|||||.|| |.|| |.||.||||||||..|.||.|||||.||.||..||
RBAM_000660__   1110 AGCAGCCGCGATTC-TGCAAGGAGCGGGACATACCGTTTTCCCCGCCGTA   1158

BSNT_00096___   1174 GCGGTGGGCGCGGGTGTTGCGGTGAAATGGGTGTTAAATACACTTT---T   1220
                     .|.||....|||||.|..|||.|||||||||||.|.|||   .|||   |
RBAM_000660__   1159 TCCGTTTTGGCGGGAGGGGCGCTGAAATGGGTGCTGAAT---GTTTGGCT   1205

BSNT_00096___   1221 GGTTCCGCGCTATGGGATTGAAGGCGCATCGCTTGCGACAGCGGCTT--C   1268
                     |||.||..|||..||.|||..|||.||..|.||.|||||  ||.|||  |
RBAM_000660__   1206 GGTCCCCGGCTGGGGTATTACAGGAGCGGCACTGGCGAC--CGTCTTGGC   1253

BSNT_00096___   1269 CTTTGCGGCTGTCGCCGGCCTTAACTTGTATCAG----CTTCGGCAAAAG   1314
                     .|||||.||.||.||..||||.||    |.||.|    .||.||...|||
RBAM_000660__   1254 ATTTGCCGCAGTTGCGTGCCTGAA----TCTCCGGAGAATTTGGTCGAAG   1299

BSNT_00096___   1315 GAATGGCTTGA-TAAGCTTAGAGGCGTTTTGATT--CCGATTAT--TGGA   1359
                     |..|||| ||| .||   ||..||||...|||||  |||..|.|  ||| 
RBAM_000660__   1300 GGCTGGC-TGACGAA---TATCGGCGGCGTGATTGCCCGTCTGTGCTGG-   1344

BSNT_00096___   1360 TCTGC--TCTTTTGAT-GTCAGCTGTCTTGCTTGCGTATACGCGTCTATG   1406
                       |||  |||..|||| |||..||.|| ||||.|..||||.|...|||||
RBAM_000660__   1345 --TGCAGTCTGCTGATGGTCTTCTTTC-TGCTCGTATATATGAAGCTATG   1391

BSNT_00096___   1407 G-ACTTTCTTGTTTCCTGCAACAGGAAG-AGGAGCGGCTGTGAT-TGAGA   1453
                     | |.||..||.||.||..||.||||  | .|||   ||||| || |||||
RBAM_000660__   1392 GCAGTTATTTCTTCCCGTCAGCAGG--GCCGGA---GCTGT-ATGTGAGA   1435

BSNT_00096___   1454 GCCTTTCTGCTGT-TGCCATTGGTGGCGC-GGTGTTTATTTATTGTATGA   1501
                     |.||.||||| || .|.|||.||.|| || ..||||||||||||||||||
RBAM_000660__   1436 GTCTGTCTGC-GTCGGTCATCGGAGG-GCTATTGTTTATTTATTGTATGA   1483

BSNT_00096___   1502 TGAGATTGGGAATATTT--ACAGATGAAGAGCTGAACAGTGTGCCATTCG   1549
                     |.|||.|  |||.||||  ||.||.||||||||||.|.|..|.||.||||
RBAM_000660__   1484 TAAGAAT--GAAGATTTTCACGGACGAAGAGCTGAGCGGCCTTCCTTTCG   1531

BSNT_00096___   1550 GCAGCAAGTTAAGCAAATTCATGAGAAGGAGAGAACAAAATGGCGGGTAA   1599
                     ||||....|||||||||||.|..|..|||||||||.||.|||||.|||||
RBAM_000660__   1532 GCAGTGCTTTAAGCAAATTGAAAAAGAGGAGAGAAAAACATGGCAGGTAA   1581


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