Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00096 and RBAM_000660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:53
# Commandline: needle
# -asequence dna-align/BSNT_00096___yabM.1.9828.seq
# -bsequence dna-align/RBAM_000660___yabM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00096___yabM-RBAM_000660___yabM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00096___yabM-RBAM_000660___yabM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00096___yabM
# 2: RBAM_000660___yabM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1700
# Identity: 1106/1700 (65.1%)
# Similarity: 1106/1700 (65.1%)
# Gaps: 220/1700 (12.9%)
# Score: 3230.5
#
#
#=======================================
BSNT_00096___ 1 ATGGACGATTCAATAGGCGTTAAACGGCATTGGATTTGGCAGGGGGCTTT 50
|||.||||||||.|.||||..||.|||||.|.|...|||.|.||.|||||
RBAM_000660__ 1 ATGAACGATTCAGTTGGCGCCAAGCGGCAATCGGCATGGAAAGGTGCTTT 50
BSNT_00096___ 51 TGTTTTAATTCTGGCAGGCGTCATCACAAAAATTTTAAGCGCTGTTTACA 100
|||..|..|..|.||.||..||.|.||.||.||.||||||||.||.||||
RBAM_000660__ 51 TGTGCTCGTCGTTGCGGGTATCGTAACGAAGATATTAAGCGCCGTGTACA 100
BSNT_00096___ 101 GAGTCCCGTTTCAAAACATTGTCGGCGATGTTGGATTTTATATATATCAG 150
|.||.||.|||||.||.||||||||.||.||.||.|||||.||.||||||
RBAM_000660__ 101 GGGTTCCTTTTCAGAATATTGTCGGTGACGTCGGGTTTTACATTTATCAG 150
BSNT_00096___ 151 CAGGTATATCCCTTTCTTGGTATTGCGGTCATGCTGTCCACATCAGGATT 200
|||||.|||||.|||.|.||.||.||||||||||||||.|||||.||.||
RBAM_000660__ 151 CAGGTGTATCCGTTTTTAGGGATCGCGGTCATGCTGTCAACATCCGGTTT 200
BSNT_00096___ 201 TCCAGTCATTATTTCAAAGCTGATGAATGATTATAGTGAAAAAAATCAT- 249
|||.||.||.||.|||||..|.|||||.||||||||.| |||||
RBAM_000660__ 201 TCCGGTAATCATCTCAAAATTAATGAACGATTATAGCG------ATCATA 244
BSNT_00096___ 250 --CACACCATATTAAAAATATCAGCGTTGTTTTTGTCTTTAA------TC 291
||.|..|||.|.|||||.|| ||...|||.|||| | .|
RBAM_000660__ 245 AACAAAAAATAATGAAAATTTC--CGCCCTTTATGTC----ACGGCGGCC 288
BSNT_00096___ 292 GGTATTTTATTATTTCTT-TGTTT------ATATCTG-------GGTGCT 327
|| |.||.|| ||||| ||.|.|| ||.||.
RBAM_000660__ 289 GG---------ACTTGTTCTGTTTGCGCTCATGTATGCCGGCGCGGCGCC 329
BSNT_00096___ 328 GTT--CCTATTGCACTCTTTATGGGGGATTCGCATCTAGCCGTGT----- 370
||| ||..| ||||||||.||..|.| |||.|||
RBAM_000660__ 330 GTTGGCCGGT-------TTTATGGGTGACGCCC-----GCCTTGTGATGC 367
BSNT_00096___ 371 TAATTCAA--GTGGCCGCATGCGCGTTTC-TGCTGTTCCCATTTGTCGCG 417
|.|| || ||.||.||.|.||| |||| |.|||||.||.||| .||
RBAM_000660__ 368 TGAT--AAGGGTCGCGGCGTTCGC-TTTCATACTGTTTCCGTTT---ACG 411
BSNT_00096___ 418 TTGCTTAGAGGCGGTTTTCAGGGGCG--------------GCACGAAATG 453
| ||||||||.|||| | |||.||.|||
RBAM_000660__ 412 T----------CGGTTTTCCGGGG-GTATTTCCAAGGTGTGCATGATATG 450
BSNT_00096___ 454 CTCCCTTCAGCCTTATCACAGATGACAGAGCAGTTTCTGCGTGTTGCGGT 503
.|.||.|||||||||||.|||||.||.||.|||.||||.||.||.|||||
RBAM_000660__ 451 ATGCCGTCAGCCTTATCCCAGATTACGGAACAGCTTCTTCGCGTGGCGGT 500
BSNT_00096___ 504 GCTCTTGGGTTTATCATTTTGGCTCGTGAAAAAGGGAGCCTCGCTTTATA 553
|||..|.||||||||.||.|||||..|||||| |..|||...|.|||||
RBAM_000660__ 501 GCTTCTCGGTTTATCCTTCTGGCTTTTGAAAA--GCGGCCGTTCATTATA 548
BSNT_00096___ 554 CTGCG---GGAGCGGCAGCCGCTTCAGGCTCTCTTGCTGGAAGTTTGGTT 600
| ||| ||.||||..||.|||||.||.||..||||.|||||.||||..
RBAM_000660__ 549 C-GCGGCTGGTGCGGGGGCGGCTTCGGGATCAATTGCCGGAAGCTTGGCG 597
BSNT_00096___ 601 G-CATTGGTGATACTGGGGGTTTTTTGGTTCA-AAACGAAAAGAGAAAAC 648
| |.||.||| ||.|||..|||||.|||| | ||.||..||| ||||
RBAM_000660__ 598 GCCCTTTGTG-TATTGGCTGTTTTCTGGT--ATAAGCGGGAAG---AAAC 641
BSNT_00096___ 649 CAA-----ACGGATAGG-CAAAACGAAAATGTCATCACAACAAAAGAATT 692
||| |||| .|| ||.|.|||||..|.|.|| |||
RBAM_000660__ 642 CAAGAAAGACGG--CGGACATATCGAAACGGCCGTC-----------ATT 678
BSNT_00096___ 693 G-ACGAAAAAACTGCTTTTATATTCGGTTACAATTTGTGTAAGCAGTTTG 741
| | |||||.|||||..|.|||||.||.||.||.|||.|.||||||.|.
RBAM_000660__ 679 GTA--AAAAAGCTGCTGCTTTATTCAGTCACCATCTGTATCAGCAGTGTA 726
BSNT_00096___ 742 C---TGCTTTTGTTTATCCAGCTTGTTGATGCTTTGAATTTATATGCATT 788
| |||||||| ||.||||||||.||.||.||.||.||||||.||.|
RBAM_000660__ 727 CTCATGCTTTTG---ATTCAGCTTGTAGACGCCTTAAACTTATATTCACT 773
BSNT_00096___ 789 GCTTTCA-----GGTGGTGAGGCAAGCGAAGAAGCAAAACGCCTGAAGGG 833
||||||| |..||.|||.||.|| .||.||||..|||||.||
RBAM_000660__ 774 GCTTTCAGACGGGACGGAGAGTCATGC-----CGCGAAACAGCTGAAAGG 818
BSNT_00096___ 834 GATCTATGATCGGGGACAACCGTTGCTGCAGCTCGGCTCCGTTTTTGCCG 883
.||.|||||.||.|||||.|||.|.||.|||||.||..||||.||||||.
RBAM_000660__ 819 CATATATGACCGCGGACAGCCGCTCCTTCAGCTGGGAACCGTGTTTGCCA 868
BSNT_00096___ 884 TAAGCATTGCGACGTCACTCGTTCCGTATATTTCTATGGCTGTAAAAAAC 933
|.||.||.||..|||||.|.|||||.|..|||||.|..||.||..|..|.
RBAM_000660__ 869 TCAGTATCGCCGCGTCATTGGTTCCTTCAATTTCAAAAGCGGTGCATGAG 918
BSNT_00096___ 934 AAAGAGCTGAAGATCATGAAAGAAAAA-----ATCA--CGTCATCTTTGA 976
||..|.|.|...|||||.|||||.||| |||| |||| |
RBAM_000660__ 919 AATAACCCGTTTATCATAAAAGAGAAAGCGACATCAGCCGTC-------A 961
BSNT_00096___ 977 AACTATGCCTTGTGCTCGGTACAGGCGCATCGGTTGGGTTGATTTGCATT 1026
|.||.|||||||.|.|.||.|..||.|||||.|..|||.|..||||||||
RBAM_000660__ 962 AGCTCTGCCTTGCGGTAGGGATCGGTGCATCAGCCGGGCTTTTTTGCATT 1011
BSNT_00096___ 1027 CTAAAGCCGGTAAATATCATGCTGTTTCAAAATGGAGAAGGGA--CAGGT 1074
.||.|||||||.|||||||||||.||.|||||..|.||.|||| |||
RBAM_000660__ 1012 TTAGAGCCGGTGAATATCATGCTTTTCCAAAACAGTGAGGGGACGCAG-- 1059
BSNT_00096___ 1075 GCGTTACAAGTATTTAGCTGTTCCATTTTGTTTGCATCTATGGCGGTAAC 1124
.|.||||||.||||.||||..||.||.||.|||||.||.||.|||.|.||
RBAM_000660__ 1060 ACCTTACAAATATTCAGCTTATCTATCTTTTTTGCCTCGATTGCGCTTAC 1109
BSNT_00096___ 1125 GGCAGCGGC-AGTCTTACAGGGAGCGGGGTACACAGTTTTTCCTGCGATA 1173
.|||||.|| |.|| |.||.||||||||..|.||.|||||.||.||..||
RBAM_000660__ 1110 AGCAGCCGCGATTC-TGCAAGGAGCGGGACATACCGTTTTCCCCGCCGTA 1158
BSNT_00096___ 1174 GCGGTGGGCGCGGGTGTTGCGGTGAAATGGGTGTTAAATACACTTT---T 1220
.|.||....|||||.|..|||.|||||||||||.|.||| .||| |
RBAM_000660__ 1159 TCCGTTTTGGCGGGAGGGGCGCTGAAATGGGTGCTGAAT---GTTTGGCT 1205
BSNT_00096___ 1221 GGTTCCGCGCTATGGGATTGAAGGCGCATCGCTTGCGACAGCGGCTT--C 1268
|||.||..|||..||.|||..|||.||..|.||.||||| ||.||| |
RBAM_000660__ 1206 GGTCCCCGGCTGGGGTATTACAGGAGCGGCACTGGCGAC--CGTCTTGGC 1253
BSNT_00096___ 1269 CTTTGCGGCTGTCGCCGGCCTTAACTTGTATCAG----CTTCGGCAAAAG 1314
.|||||.||.||.||..||||.|| |.||.| .||.||...|||
RBAM_000660__ 1254 ATTTGCCGCAGTTGCGTGCCTGAA----TCTCCGGAGAATTTGGTCGAAG 1299
BSNT_00096___ 1315 GAATGGCTTGA-TAAGCTTAGAGGCGTTTTGATT--CCGATTAT--TGGA 1359
|..|||| ||| .|| ||..||||...||||| |||..|.| |||
RBAM_000660__ 1300 GGCTGGC-TGACGAA---TATCGGCGGCGTGATTGCCCGTCTGTGCTGG- 1344
BSNT_00096___ 1360 TCTGC--TCTTTTGAT-GTCAGCTGTCTTGCTTGCGTATACGCGTCTATG 1406
||| |||..|||| |||..||.|| ||||.|..||||.|...|||||
RBAM_000660__ 1345 --TGCAGTCTGCTGATGGTCTTCTTTC-TGCTCGTATATATGAAGCTATG 1391
BSNT_00096___ 1407 G-ACTTTCTTGTTTCCTGCAACAGGAAG-AGGAGCGGCTGTGAT-TGAGA 1453
| |.||..||.||.||..||.|||| | .||| ||||| || |||||
RBAM_000660__ 1392 GCAGTTATTTCTTCCCGTCAGCAGG--GCCGGA---GCTGT-ATGTGAGA 1435
BSNT_00096___ 1454 GCCTTTCTGCTGT-TGCCATTGGTGGCGC-GGTGTTTATTTATTGTATGA 1501
|.||.||||| || .|.|||.||.|| || ..||||||||||||||||||
RBAM_000660__ 1436 GTCTGTCTGC-GTCGGTCATCGGAGG-GCTATTGTTTATTTATTGTATGA 1483
BSNT_00096___ 1502 TGAGATTGGGAATATTT--ACAGATGAAGAGCTGAACAGTGTGCCATTCG 1549
|.|||.| |||.|||| ||.||.||||||||||.|.|..|.||.||||
RBAM_000660__ 1484 TAAGAAT--GAAGATTTTCACGGACGAAGAGCTGAGCGGCCTTCCTTTCG 1531
BSNT_00096___ 1550 GCAGCAAGTTAAGCAAATTCATGAGAAGGAGAGAACAAAATGGCGGGTAA 1599
||||....|||||||||||.|..|..|||||||||.||.|||||.|||||
RBAM_000660__ 1532 GCAGTGCTTTAAGCAAATTGAAAAAGAGGAGAGAAAAACATGGCAGGTAA 1581
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