Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00087 and RBAM_000590

See Amino acid alignment / Visit BSNT_00087 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:51
# Commandline: needle
#    -asequence dna-align/BSNT_00087___gcaD.1.9828.seq
#    -bsequence dna-align/RBAM_000590___gcaD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00087___gcaD-RBAM_000590___gcaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00087___gcaD-RBAM_000590___gcaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00087___gcaD
# 2: RBAM_000590___gcaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1376
# Identity:    1129/1376 (82.0%)
# Similarity:  1129/1376 (82.0%)
# Gaps:          10/1376 ( 0.7%)
# Score: 4616.0
# 
#
#=======================================

BSNT_00087___      1 ATGGATAAGCGGTTTGCAGTTGTTTTAGCGGCTGGACAAGGAACGAGAAT     50
                     ||||||||||||||||||||..|||||||.||.|||.|||||||||||||
RBAM_000590__      1 ATGGATAAGCGGTTTGCAGTGATTTTAGCTGCCGGAAAAGGAACGAGAAT     50

BSNT_00087___     51 GAAATCGAAGCTTTATAAAGTCCTTCATCCAGTTTGCGGTAAGCCTATGG    100
                     |||||||||||||||.||.|||||||||||.||.|||||.||||||||||
RBAM_000590__     51 GAAATCGAAGCTTTACAAGGTCCTTCATCCGGTATGCGGAAAGCCTATGG    100

BSNT_00087___    101 TAGAGCACGTCGTGGACGAAGCCTTAAAATTATCTTTATCGAAGCTTGTC    150
                     ||||||||||||..||||||||..|.||||||||||||.|||||||||||
RBAM_000590__    101 TAGAGCACGTCGCAGACGAAGCTCTGAAATTATCTTTAGCGAAGCTTGTC    150

BSNT_00087___    151 ACGATTGTCGGACATGGTGCGGAAGAAGTGAAAAAGCAGCTTGGTGATAA    200
                     ||.||.||.|||||.||.||.|||||.|||||.||||||||.||..|.||
RBAM_000590__    151 ACCATCGTAGGACACGGCGCCGAAGATGTGAAGAAGCAGCTCGGACAGAA    200

BSNT_00087___    201 AAGCGAGTACGCGCTTCAAGCAGAACAGCTTGGCACTGCTCATGCTGTAA    250
                     ||||||.|||||.||.||||||||||||||.||.||.||||||||.||.|
RBAM_000590__    201 AAGCGATTACGCTCTCCAAGCAGAACAGCTCGGTACGGCTCATGCGGTCA    250

BSNT_00087___    251 AACAGGCACAGCCATTTCTT-GCTGACGAAAAAGGCGTCACAATTGTCAT    299
                     ||||||||.|.||||||||| .|.|| |||||.||.|||||.||.||.||
RBAM_000590__    251 AACAGGCAAAACCATTTCTTCACGGA-GAAAAGGGTGTCACGATCGTTAT    299

BSNT_00087___    300 TTGCGGAGATACGCCGCTTTTGACAGCAGAGACGATGGAACAGATGCTGA    349
                     ||||||.|||||.||||||.||||.||.||||||||||||...|||||||
RBAM_000590__    300 TTGCGGCGATACACCGCTTCTGACGGCGGAGACGATGGAAGCCATGCTGA    349

BSNT_00087___    350 AAGAACATGCACAAAGAGAAGCGAAAGCTACGATTTTAACTGCGGTTGCA    399
                     |.||||||.||.|.|.||..||.|||||.|||.|.|||||.||.|||||.
RBAM_000590__    350 ATGAACATACAGACAAAGGTGCAAAAGCCACGGTGTTAACGGCCGTTGCC    399

BSNT_00087___    400 GAAGATCCAACTGGATACGGCCGCATTATTCGCAGCGAAAACGGAGCGGT    449
                     ||.|||||..|.||||||||..|.||.||.|||||.|||.||||.||.||
RBAM_000590__    400 GACGATCCCGCCGGATACGGAAGAATCATCCGCAGTGAAGACGGCGCCGT    449

BSNT_00087___    450 TCAAAAAATCGTTGAGCATAAGGACGCCTCTGAAGAAGAACGTCTTGTAA    499
                     ||||||||||||.|||||.|||||.||.||.||..|||||||||||||.|
RBAM_000590__    450 TCAAAAAATCGTGGAGCACAAGGATGCTTCGGAGCAAGAACGTCTTGTGA    499

BSNT_00087___    500 CTGAGATCAACACCGGTACGTATTGTTTTGACAATGAAGCGCTATTTCGG    549
                     ..||.||.|||||.||.|||||.||||||||.||.||.||.||.|||||.
RBAM_000590__    500 AAGAAATTAACACGGGAACGTACTGTTTTGATAACGAGGCTCTTTTTCGT    549

BSNT_00087___    550 GCTATTGATCAGGTGTCTAATGATAATGCCCAAGGCGAGTATTATTTGCC    599
                     |..||.||.|||||.||.|||||.|||||||||||||||||||||.||||
RBAM_000590__    550 GTCATCGAACAGGTTTCGAATGAAAATGCCCAAGGCGAGTATTATCTGCC    599

BSNT_00087___    600 GGATGTCATAGAGATTCTTAAAAATGAAGGCGAAACTGTTGCCGCTTACC    649
                     ||||||.||.||.||.||.|||.|.|||||||||||||||||||||||||
RBAM_000590__    600 GGATGTGATCGAAATCCTCAAAGACGAAGGCGAAACTGTTGCCGCTTACC    649

BSNT_00087___    650 AGACTGGTAATTTCCAAGAAACGCTCGGAGTTAATGATAGAGTTGCTCTT    699
                     ||||||||||.||||||||.|||||||||||.|||||||||||.||||||
RBAM_000590__    650 AGACTGGTAACTTCCAAGAGACGCTCGGAGTGAATGATAGAGTCGCTCTT    699

BSNT_00087___    700 TCTCAGGCAGAACAATTTATGAAAGAGCGCATTAATAAACGGCATATGCA    749
                     ||||||||.|||...|.||||||||||||.|||||.||||||||||||||
RBAM_000590__    700 TCTCAGGCTGAAATGTATATGAAAGAGCGTATTAACAAACGGCATATGCA    749

BSNT_00087___    750 AAATGGCGTGACGTTGATCGACCCGATGAATACGTATATTTCTCCTGACG    799
                     .||.||.||.||.||.|||||.||||||||||||||.||.||.|||||||
RBAM_000590__    750 GAACGGAGTCACTTTAATCGATCCGATGAATACGTACATCTCACCTGACG    799

BSNT_00087___    800 CTGTTATCGGAAGCGATACTGTGATTTACCCTGGAACTGTGATTAAAGGT    849
                     |...|||||||...|||||.||.|||||.||.||||||||| ||||||| 
RBAM_000590__    800 CACGTATCGGACAAGATACAGTTATTTATCCCGGAACTGTG-TTAAAGG-    847

BSNT_00087___    850 G---AGGTGCAAATCGGAGAAGATACG-ATTATTGGCCCTCATACGGAGA    895
                     |   ||.|| |||||||.||.|| |.| .|.||.|||||.||.||.||||
RBAM_000590__    848 GACAAGCTG-AAATCGGCGATGA-ATGTGTCATCGGCCCCCACACTGAGA    895

BSNT_00087___    896 TTATGAATAGTGCCATTGGCAGCCGTACGGTTATTAAACAATCGGTAGTC    945
                     |...|.|.||..|.||.||||||||.||.||.|||||||||||.||.|||
RBAM_000590__    896 TAGAGGACAGCTCAATCGGCAGCCGCACTGTGATTAAACAATCCGTTGTC    945

BSNT_00087___    946 AATCACAGTAAAGTGGGGAATGATGTAAACATAGGACCTTTTGCTCACAT    995
                     ||||.|||.|||||.||||||||||||||.||.||.||||||||||||||
RBAM_000590__    946 AATCGCAGCAAAGTTGGGAATGATGTAAATATCGGTCCTTTTGCTCACAT    995

BSNT_00087___    996 CAGACCTGATTCTGTCATCGGGAATGAAGTGAAGATCGGGAATTTTGTAG   1045
                     ||||||.|||||.|..|||||.|||||||||||||||||.||.|||||.|
RBAM_000590__    996 CAGACCCGATTCCGCAATCGGCAATGAAGTGAAGATCGGAAACTTTGTTG   1045

BSNT_00087___   1046 AAATTAAAAAGACTCAATTCGGAGACCGAAGCAAGGCATCTCATCTAAGC   1095
                     ||||.||.||.||.||||||||.|||||.|||||.|||||||||.|||||
RBAM_000590__   1046 AAATCAAGAAAACACAATTCGGCGACCGGAGCAAAGCATCTCATTTAAGC   1095

BSNT_00087___   1096 TATGTCGGCGATGCTGAGGTAGGCACTGATGTAAACCTGGGCTGCGGTTC   1145
                     |||.||||.|||||.||.||.|||||.|||||.||.|||||||||||.||
RBAM_000590__   1096 TATATCGGTGATGCCGAAGTGGGCACGGATGTGAATCTGGGCTGCGGCTC   1145

BSNT_00087___   1146 AATTACTGTCAATTATGATGGAAAGAATAAGTATTTGACAAAAATTGAAG   1195
                     .||.||.||||||||||||||.|||||.||||||||.||.||||||||||
RBAM_000590__   1146 CATCACGGTCAATTATGATGGGAAGAAAAAGTATTTAACCAAAATTGAAG   1195

BSNT_00087___   1196 ATGGCGCGTTTATCGGCTGTAATTCCAACTTGGTTGCCCCTGTCACAGTC   1245
                     |.|||||.|||||.|||||.||.|||||..||||.||.|||||.|||||.
RBAM_000590__   1196 ACGGCGCCTTTATTGGCTGCAACTCCAATCTGGTCGCTCCTGTTACAGTG   1245

BSNT_00087___   1246 GGAGAAGGCGCTTATGTGGCGGCAGGTTCAACTGTTACGGAAGATGTACC   1295
                     |||||||||||.||.||.||.||.||||||||.||.||.||||||||.||
RBAM_000590__   1246 GGAGAAGGCGCGTACGTCGCTGCGGGTTCAACCGTAACTGAAGATGTGCC   1295

BSNT_00087___   1296 TGGAAAAGCACTTGCTATTGCCAGAGCGAGACAAGTAAATAAAGACGATT   1345
                     .||..||||.|||||.|||||||||||.|||||||||||||||||.||||
RBAM_000590__   1296 GGGCGAAGCGCTTGCCATTGCCAGAGCAAGACAAGTAAATAAAGAAGATT   1345

BSNT_00087___   1346 ATGTGAAAAATATTCATAAAAAATAA   1371
                     ||||||||||.|||||||||||||||
RBAM_000590__   1346 ATGTGAAAAACATTCATAAAAAATAA   1371


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.