Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00087 and RBAM_000590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_00087___gcaD.1.9828.seq
# -bsequence dna-align/RBAM_000590___gcaD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00087___gcaD-RBAM_000590___gcaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00087___gcaD-RBAM_000590___gcaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00087___gcaD
# 2: RBAM_000590___gcaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1376
# Identity: 1129/1376 (82.0%)
# Similarity: 1129/1376 (82.0%)
# Gaps: 10/1376 ( 0.7%)
# Score: 4616.0
#
#
#=======================================
BSNT_00087___ 1 ATGGATAAGCGGTTTGCAGTTGTTTTAGCGGCTGGACAAGGAACGAGAAT 50
||||||||||||||||||||..|||||||.||.|||.|||||||||||||
RBAM_000590__ 1 ATGGATAAGCGGTTTGCAGTGATTTTAGCTGCCGGAAAAGGAACGAGAAT 50
BSNT_00087___ 51 GAAATCGAAGCTTTATAAAGTCCTTCATCCAGTTTGCGGTAAGCCTATGG 100
|||||||||||||||.||.|||||||||||.||.|||||.||||||||||
RBAM_000590__ 51 GAAATCGAAGCTTTACAAGGTCCTTCATCCGGTATGCGGAAAGCCTATGG 100
BSNT_00087___ 101 TAGAGCACGTCGTGGACGAAGCCTTAAAATTATCTTTATCGAAGCTTGTC 150
||||||||||||..||||||||..|.||||||||||||.|||||||||||
RBAM_000590__ 101 TAGAGCACGTCGCAGACGAAGCTCTGAAATTATCTTTAGCGAAGCTTGTC 150
BSNT_00087___ 151 ACGATTGTCGGACATGGTGCGGAAGAAGTGAAAAAGCAGCTTGGTGATAA 200
||.||.||.|||||.||.||.|||||.|||||.||||||||.||..|.||
RBAM_000590__ 151 ACCATCGTAGGACACGGCGCCGAAGATGTGAAGAAGCAGCTCGGACAGAA 200
BSNT_00087___ 201 AAGCGAGTACGCGCTTCAAGCAGAACAGCTTGGCACTGCTCATGCTGTAA 250
||||||.|||||.||.||||||||||||||.||.||.||||||||.||.|
RBAM_000590__ 201 AAGCGATTACGCTCTCCAAGCAGAACAGCTCGGTACGGCTCATGCGGTCA 250
BSNT_00087___ 251 AACAGGCACAGCCATTTCTT-GCTGACGAAAAAGGCGTCACAATTGTCAT 299
||||||||.|.||||||||| .|.|| |||||.||.|||||.||.||.||
RBAM_000590__ 251 AACAGGCAAAACCATTTCTTCACGGA-GAAAAGGGTGTCACGATCGTTAT 299
BSNT_00087___ 300 TTGCGGAGATACGCCGCTTTTGACAGCAGAGACGATGGAACAGATGCTGA 349
||||||.|||||.||||||.||||.||.||||||||||||...|||||||
RBAM_000590__ 300 TTGCGGCGATACACCGCTTCTGACGGCGGAGACGATGGAAGCCATGCTGA 349
BSNT_00087___ 350 AAGAACATGCACAAAGAGAAGCGAAAGCTACGATTTTAACTGCGGTTGCA 399
|.||||||.||.|.|.||..||.|||||.|||.|.|||||.||.|||||.
RBAM_000590__ 350 ATGAACATACAGACAAAGGTGCAAAAGCCACGGTGTTAACGGCCGTTGCC 399
BSNT_00087___ 400 GAAGATCCAACTGGATACGGCCGCATTATTCGCAGCGAAAACGGAGCGGT 449
||.|||||..|.||||||||..|.||.||.|||||.|||.||||.||.||
RBAM_000590__ 400 GACGATCCCGCCGGATACGGAAGAATCATCCGCAGTGAAGACGGCGCCGT 449
BSNT_00087___ 450 TCAAAAAATCGTTGAGCATAAGGACGCCTCTGAAGAAGAACGTCTTGTAA 499
||||||||||||.|||||.|||||.||.||.||..|||||||||||||.|
RBAM_000590__ 450 TCAAAAAATCGTGGAGCACAAGGATGCTTCGGAGCAAGAACGTCTTGTGA 499
BSNT_00087___ 500 CTGAGATCAACACCGGTACGTATTGTTTTGACAATGAAGCGCTATTTCGG 549
..||.||.|||||.||.|||||.||||||||.||.||.||.||.|||||.
RBAM_000590__ 500 AAGAAATTAACACGGGAACGTACTGTTTTGATAACGAGGCTCTTTTTCGT 549
BSNT_00087___ 550 GCTATTGATCAGGTGTCTAATGATAATGCCCAAGGCGAGTATTATTTGCC 599
|..||.||.|||||.||.|||||.|||||||||||||||||||||.||||
RBAM_000590__ 550 GTCATCGAACAGGTTTCGAATGAAAATGCCCAAGGCGAGTATTATCTGCC 599
BSNT_00087___ 600 GGATGTCATAGAGATTCTTAAAAATGAAGGCGAAACTGTTGCCGCTTACC 649
||||||.||.||.||.||.|||.|.|||||||||||||||||||||||||
RBAM_000590__ 600 GGATGTGATCGAAATCCTCAAAGACGAAGGCGAAACTGTTGCCGCTTACC 649
BSNT_00087___ 650 AGACTGGTAATTTCCAAGAAACGCTCGGAGTTAATGATAGAGTTGCTCTT 699
||||||||||.||||||||.|||||||||||.|||||||||||.||||||
RBAM_000590__ 650 AGACTGGTAACTTCCAAGAGACGCTCGGAGTGAATGATAGAGTCGCTCTT 699
BSNT_00087___ 700 TCTCAGGCAGAACAATTTATGAAAGAGCGCATTAATAAACGGCATATGCA 749
||||||||.|||...|.||||||||||||.|||||.||||||||||||||
RBAM_000590__ 700 TCTCAGGCTGAAATGTATATGAAAGAGCGTATTAACAAACGGCATATGCA 749
BSNT_00087___ 750 AAATGGCGTGACGTTGATCGACCCGATGAATACGTATATTTCTCCTGACG 799
.||.||.||.||.||.|||||.||||||||||||||.||.||.|||||||
RBAM_000590__ 750 GAACGGAGTCACTTTAATCGATCCGATGAATACGTACATCTCACCTGACG 799
BSNT_00087___ 800 CTGTTATCGGAAGCGATACTGTGATTTACCCTGGAACTGTGATTAAAGGT 849
|...|||||||...|||||.||.|||||.||.||||||||| |||||||
RBAM_000590__ 800 CACGTATCGGACAAGATACAGTTATTTATCCCGGAACTGTG-TTAAAGG- 847
BSNT_00087___ 850 G---AGGTGCAAATCGGAGAAGATACG-ATTATTGGCCCTCATACGGAGA 895
| ||.|| |||||||.||.|| |.| .|.||.|||||.||.||.||||
RBAM_000590__ 848 GACAAGCTG-AAATCGGCGATGA-ATGTGTCATCGGCCCCCACACTGAGA 895
BSNT_00087___ 896 TTATGAATAGTGCCATTGGCAGCCGTACGGTTATTAAACAATCGGTAGTC 945
|...|.|.||..|.||.||||||||.||.||.|||||||||||.||.|||
RBAM_000590__ 896 TAGAGGACAGCTCAATCGGCAGCCGCACTGTGATTAAACAATCCGTTGTC 945
BSNT_00087___ 946 AATCACAGTAAAGTGGGGAATGATGTAAACATAGGACCTTTTGCTCACAT 995
||||.|||.|||||.||||||||||||||.||.||.||||||||||||||
RBAM_000590__ 946 AATCGCAGCAAAGTTGGGAATGATGTAAATATCGGTCCTTTTGCTCACAT 995
BSNT_00087___ 996 CAGACCTGATTCTGTCATCGGGAATGAAGTGAAGATCGGGAATTTTGTAG 1045
||||||.|||||.|..|||||.|||||||||||||||||.||.|||||.|
RBAM_000590__ 996 CAGACCCGATTCCGCAATCGGCAATGAAGTGAAGATCGGAAACTTTGTTG 1045
BSNT_00087___ 1046 AAATTAAAAAGACTCAATTCGGAGACCGAAGCAAGGCATCTCATCTAAGC 1095
||||.||.||.||.||||||||.|||||.|||||.|||||||||.|||||
RBAM_000590__ 1046 AAATCAAGAAAACACAATTCGGCGACCGGAGCAAAGCATCTCATTTAAGC 1095
BSNT_00087___ 1096 TATGTCGGCGATGCTGAGGTAGGCACTGATGTAAACCTGGGCTGCGGTTC 1145
|||.||||.|||||.||.||.|||||.|||||.||.|||||||||||.||
RBAM_000590__ 1096 TATATCGGTGATGCCGAAGTGGGCACGGATGTGAATCTGGGCTGCGGCTC 1145
BSNT_00087___ 1146 AATTACTGTCAATTATGATGGAAAGAATAAGTATTTGACAAAAATTGAAG 1195
.||.||.||||||||||||||.|||||.||||||||.||.||||||||||
RBAM_000590__ 1146 CATCACGGTCAATTATGATGGGAAGAAAAAGTATTTAACCAAAATTGAAG 1195
BSNT_00087___ 1196 ATGGCGCGTTTATCGGCTGTAATTCCAACTTGGTTGCCCCTGTCACAGTC 1245
|.|||||.|||||.|||||.||.|||||..||||.||.|||||.|||||.
RBAM_000590__ 1196 ACGGCGCCTTTATTGGCTGCAACTCCAATCTGGTCGCTCCTGTTACAGTG 1245
BSNT_00087___ 1246 GGAGAAGGCGCTTATGTGGCGGCAGGTTCAACTGTTACGGAAGATGTACC 1295
|||||||||||.||.||.||.||.||||||||.||.||.||||||||.||
RBAM_000590__ 1246 GGAGAAGGCGCGTACGTCGCTGCGGGTTCAACCGTAACTGAAGATGTGCC 1295
BSNT_00087___ 1296 TGGAAAAGCACTTGCTATTGCCAGAGCGAGACAAGTAAATAAAGACGATT 1345
.||..||||.|||||.|||||||||||.|||||||||||||||||.||||
RBAM_000590__ 1296 GGGCGAAGCGCTTGCCATTGCCAGAGCAAGACAAGTAAATAAAGAAGATT 1345
BSNT_00087___ 1346 ATGTGAAAAATATTCATAAAAAATAA 1371
||||||||||.|||||||||||||||
RBAM_000590__ 1346 ATGTGAAAAACATTCATAAAAAATAA 1371
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