Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00085 and RBAM_000580

See Amino acid alignment / Visit BSNT_00085 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:51
# Commandline: needle
#    -asequence dna-align/BSNT_00085.1.9828.seq
#    -bsequence dna-align/RBAM_000580___spoVG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00085-RBAM_000580___spoVG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00085-RBAM_000580___spoVG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00085
# 2: RBAM_000580___spoVG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 294
# Identity:     231/294 (78.6%)
# Similarity:   231/294 (78.6%)
# Gaps:          48/294 (16.3%)
# Score: 1095.0
# 
#
#=======================================

BSNT_00085         1 ------------------------------------------------AT      2
                                                                     ||
RBAM_000580__      1 GTGGAAGTTACTGACGTAAGATTACGCCGCGTGAATACCGATGGTCGCAT     50

BSNT_00085         3 GAGAGCGATTGCATCCATCACGCTGGATCACGAATTTGTTGTACATGATA     52
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_000580__     51 GAGAGCGATTGCATCCATCACGCTGGATCACGAATTTGTTGTACATGATA    100

BSNT_00085        53 TTCGTGTGATTGATGGAAACAATGGTCTTTTCGTTGCGATGCCGAGTAAA    102
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_000580__    101 TTCGTGTGATTGATGGAAACAATGGTCTTTTCGTTGCGATGCCGAGTAAA    150

BSNT_00085       103 CGCACCCCTGATGGAGAGTTCCGCGATATTGCTCATCCTATTAATTCAAG    152
                     |||||||||||||||||.|||||||||||||||||||||||||||||.||
RBAM_000580__    151 CGCACCCCTGATGGAGAATTCCGCGATATTGCTCATCCTATTAATTCCAG    200

BSNT_00085       153 CACGCGAGGAAAGATTCAAGATGCCGTGTTAAATGAGTATCATCGTCTGG    202
                     ||||||.||.|||||.||.|||||.||.||||||||||||||||||.|||
RBAM_000580__    201 CACGCGGGGCAAGATCCAGGATGCTGTTTTAAATGAGTATCATCGTTTGG    250

BSNT_00085       203 GTGACACTGAAGCATTAGAATTCGAAGAAGCTGGAGCTTCTTAA    246
                     ||||..|||||||||||||||..||||||||.||.|||||||||
RBAM_000580__    251 GTGATTCTGAAGCATTAGAATATGAAGAAGCCGGGGCTTCTTAA    294


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