Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00082 and RBAM_000550

See Amino acid alignment / Visit BSNT_00082 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:51
# Commandline: needle
#    -asequence dna-align/BSNT_00082___ispE.1.9828.seq
#    -bsequence dna-align/RBAM_000550___ipk.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00082___ispE-RBAM_000550___ipk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00082___ispE-RBAM_000550___ipk.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00082___ispE
# 2: RBAM_000550___ipk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 883
# Identity:     679/883 (76.9%)
# Similarity:   679/883 (76.9%)
# Gaps:          17/883 ( 1.9%)
# Score: 2586.0
# 
#
#=======================================

BSNT_00082___      1 GTGAAAGCTATGCGTATTTTAGAAAAAGCGCCAGCTAAGATCAATCTGTC     50
                              |||||||||||||||||||||||.||.||.|||||||||||
RBAM_000550__      1 ---------ATGCGTATTTTAGAAAAAGCGCCGGCCAAAATCAATCTGTC     41

BSNT_00082___     51 ACTTGACGTCACCCGAAAACGCCCGGATGGCTATCATGAAGTCGAAATGA    100
                     .||.||.||.||..|.||||||||||||||.|||||.|||||.||.||||
RBAM_000550__     42 CCTCGATGTGACAAGTAAACGCCCGGATGGTTATCACGAAGTGGAGATGA     91

BSNT_00082___    101 TCATGACGACAATTGATTTAGCTGATCGAATTGAATTGACGGAGCTTGCA    150
                     |||||||||||||||||||.||.|||||.||||||.||||.||.||..|.
RBAM_000550__     92 TCATGACGACAATTGATTTGGCAGATCGGATTGAACTGACAGAACTGCCC    141

BSNT_00082___    151 GAGGATGAAGTGAGGGTTTCCTCCCACAACCGATTTGTGCCTGATGACCA    200
                     ||..|.|...|.||.||..|.||.||.||.||.|||||.||.|||||.||
RBAM_000550__    142 GAAAACGTTATCAGAGTGGCGTCGCATAATCGCTTTGTTCCGGATGATCA    191

BSNT_00082___    201 AAGAAACTTAGCTTATCAGGCTGCCAAGCTGATCAAGGACAGA-TACAAC    249
                     |||.||..|.|||||||||||.|||||.|||.|.||.||..|| |.||| 
RBAM_000550__    192 AAGGAATCTGGCTTATCAGGCAGCCAAACTGCTTAAAGAACGATTTCAA-    240

BSNT_00082___    250 GTGAAAAAGGGAGTTTCCATCATGATTACGAAGGTAATTCCGGTGGCTGC    299
                     ||.|||||.||.||||||||.||||||||.||.||.||.||.||.||.||
RBAM_000550__    241 GTCAAAAAAGGCGTTTCCATTATGATTACAAAAGTGATCCCTGTAGCGGC    290

BSNT_00082___    300 CGGTCTTGCCGGCGGGAGCAGTGATGCGGCGGCGACGCTCAGAGGGCTGA    349
                     .||.|||||||||||.|||||.||||||||.||.||||||||||||||||
RBAM_000550__    291 AGGGCTTGCCGGCGGAAGCAGCGATGCGGCAGCCACGCTCAGAGGGCTGA    340

BSNT_00082___    350 ACAGACTGTGGAATTTAAATCTGTCTGCGGAAACGCTTGCTGAGCTTGGA    399
                     ||||.||.|||.|||||||.||.||||..|||..|||.||.|||||||||
RBAM_000550__    341 ACAGGCTTTGGGATTTAAAGCTTTCTGTCGAAGAGCTCGCGGAGCTTGGA    390

BSNT_00082___    400 GCGGAAATTGGCTCTGACGTTTCATTTTGTGTCTATGGCGGAACTGCATT    449
                     ||.|||||.||.||.|||||.||.||.|||||.||.||.||.|||||..|
RBAM_000550__    391 GCTGAAATCGGTTCAGACGTGTCCTTCTGTGTATACGGAGGCACTGCCCT    440

BSNT_00082___    450 AGCAACAGGGCGCGGCGAGAAAATTAAACATATCAGCACGCCTCCGCACT    499
                     .|||||.||.|||||.|||||.||.|..||.|||||..|.||.||.||.|
RBAM_000550__    441 GGCAACCGGACGCGGTGAGAAGATCAGGCACATCAGTGCTCCGCCTCATT    490

BSNT_00082___    500 GCTGGGTCATTTTAGCGAAGCCGACTATCGGTGTTTCAACTGCTGAAGTG    549
                     ||||||||.|..|.||.||.|||||.|||||.||.||||||||.||||||
RBAM_000550__    491 GCTGGGTCGTGCTTGCCAAACCGACGATCGGGGTATCAACTGCCGAAGTG    540

BSNT_00082___    550 TACAGAGCGCTGAA---ACTGGATGGTATAGAGCATCCCGATGTACAAGG    596
                     |||.|...||||||   ||.|.| ||| |.| ||||||.|||||.||.|.
RBAM_000550__    541 TACCGCCGGCTGAACTTACAGCA-GGT-TCG-GCATCCTGATGTGCAGGC    587

BSNT_00082___    597 AATGATCGAGGCGATAGAAGAAAAGAGTTTTCAGGAGATGTGCAGCCGTT    646
                     .|||||.||.|||||.||||||||.||.||.||..||.|.|||.|.|..|
RBAM_000550__    588 GATGATTGACGCGATTGAAGAAAAAAGCTTCCAAAAGGTATGCGGACAAT    637

BSNT_00082___    647 TAGGCAATGTGCTTGAATCTGTTACGCTCGATATGCATCCTGAAGTTGCA    696
                     ||||.||.||..|.||.||.|||||||||....|.|||||.||.||.||.
RBAM_000550__    638 TAGGAAACGTATTGGAGTCAGTTACGCTCAGCCTCCATCCCGAGGTGGCG    687

BSNT_00082___    697 ATGATCAAAAACCAGATGAAACGCTTTGGTGCAGATGCCGTGTTAATGAG    746
                     |||||.|||||.||.|||||||||||.||.||.|||||.|||||||||||
RBAM_000550__    688 ATGATTAAAAATCAAATGAAACGCTTCGGCGCTGATGCGGTGTTAATGAG    737

BSNT_00082___    747 CGGGAGCGGCCCGACAGTGTTTGGACTGGTTCAGTATGAGTCGAAGGTGC    796
                     |||.|||||.|||||.||.||.||..|||||||.||.||.||||||||||
RBAM_000550__    738 CGGAAGCGGACCGACTGTATTCGGTTTGGTTCAATACGAATCGAAGGTGC    787

BSNT_00082___    797 AGAGAATTTATAACGGGTTAAGAGGCTTCTGCGATCAAGTTTATGCGGTG    846
                     ||.|.||||||||||||||||||||.|||||.||||||||.||.||||||
RBAM_000550__    788 AGCGGATTTATAACGGGTTAAGAGGTTTCTGTGATCAAGTGTACGCGGTG    837

BSNT_00082___    847 AGAATGATCGGCGAACAGAACGCTCTTGATTAA    879
                     .|.|||||||||||||||||.||||||||||||
RBAM_000550__    838 CGGATGATCGGCGAACAGAATGCTCTTGATTAA    870


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00082 and RBAM_000550

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
