Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00076 and RBAM_000500

See Amino acid alignment / Visit BSNT_00076 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:51
# Commandline: needle
#    -asequence dna-align/BSNT_00076___rnmV.1.9828.seq
#    -bsequence dna-align/RBAM_000500___rnmV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00076___rnmV-RBAM_000500___rnmV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00076___rnmV-RBAM_000500___rnmV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00076___rnmV
# 2: RBAM_000500___rnmV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 570
# Identity:     456/570 (80.0%)
# Similarity:   456/570 (80.0%)
# Gaps:          15/570 ( 2.6%)
# Score: 1830.5
# 
#
#=======================================

BSNT_00076___      1 ATGAAAATTAAAGAGATCATTGTGGTCGAGGGGCGTGACGATACGGCCCG     50
                     ||||||||||||||.||.|||||.||||||||.||.||.||.||.||.||
RBAM_000500__      1 ATGAAAATTAAAGAAATTATTGTAGTCGAGGGACGCGATGACACTGCGCG     50

BSNT_00076___     51 CATCAAATTGGCTGTTGATGCAGACACAATTGAAACAAATGGTTCAGCCA    100
                     |||.|||.|.||.||||||||.||.||.||.||.|||||.|||||.||.|
RBAM_000500__     51 CATAAAACTTGCCGTTGATGCGGATACGATCGAGACAAACGGTTCCGCAA    100

BSNT_00076___    101 TC---GATGA--TCATGTGATTGACCAAATCCGTTTGGCCCAGAAGACGA    145
                     ||   |||||  ||||..||     ||.||.||..||||.|||.|.||||
RBAM_000500__    101 TCGGAGATGAAGTCATCAGA-----CAGATTCGGCTGGCGCAGGAAACGA    145

BSNT_00076___    146 GAGGCGTCATTATTTTAACGGATCCGGACTTTCCGGGAGAGAAGATTCGC    195
                     ||||.|||||..|..|.|||||.|||||.||||||||.||.|||||.||.
RBAM_000500__    146 GAGGGGTCATCGTGCTGACGGACCCGGATTTTCCGGGGGAAAAGATCCGG    195

BSNT_00076___    196 AAAACCATCTCAGAGGCTGTACCCGGCTGTAAGCATGCATTTTTGCCAAA    245
                     ||||||||.||.||.||.||||||||||||||.||.||||||.||||.||
RBAM_000500__    196 AAAACCATTTCTGAAGCAGTACCCGGCTGTAAACACGCATTTCTGCCCAA    245

BSNT_00076___    246 ACATCTTGCCAAACCTAAAAACAAGCGGGGAATTGGTGTGGAGCATGCAT    295
                     |||||||||||||||.|||||||||||.||.|||||.||.|||||.||||
RBAM_000500__    246 ACATCTTGCCAAACCGAAAAACAAGCGCGGCATTGGCGTTGAGCACGCAT    295

BSNT_00076___    296 CGGTTGAAAGCATTAGGGCATGTTTAGAAAATGTGCATGAGGAGATGGAA    345
                     |..||||||||||.||.||||||.|.||||||||||||||.||||||||.
RBAM_000500__    296 CCATTGAAAGCATCAGAGCATGTCTGGAAAATGTGCATGAAGAGATGGAG    345

BSNT_00076___    346 GCGCAGCCGAGTGACATTTCAGCTGAGGATTTGATTCATGCCGGACTAAT    395
                     ||..||||||||||.|||||||||||.|||.|.||.||.|||||.||.||
RBAM_000500__    346 GCAAAGCCGAGTGAGATTTCAGCTGAAGATGTCATACAGGCCGGTCTGAT    395

BSNT_00076___    396 AGGCGGGCATGCGGCCAAATGCCGCCGGGAACGACTGGGTGATCTGTTGA    445
                     .|||||.|..||.||||||.|.|||||.||||||.||||.||.|||.|||
RBAM_000500__    396 CGGCGGACCGGCTGCCAAAAGACGCCGCGAACGATTGGGCGACCTGCTGA    445

BSNT_00076___    446 AAATCGGCTATACAAATGGCAAACAGCTTCAAAAACGGCTGCAAATGTTT    495
                     |.||||||||||||||.|||||.|||||||||||||||||||||||||||
RBAM_000500__    446 AGATCGGCTATACAAACGGCAAGCAGCTTCAAAAACGGCTGCAAATGTTT    495

BSNT_00076___    496 CAAATTAAAAAAAGTGATTTTA-TGAGTGCGCTCGATACCGTTATGCGGG    544
                     |||||.||||.||||||||||| ||| ||||||||||.|..|.|.||.||
RBAM_000500__    496 CAAATCAAAAGAAGTGATTTTATTGA-TGCGCTCGATGCTATGAGGCAGG    544

BSNT_00076___    545 AGGAACAGAATGAATAA---    561
                     ||||||||.|||||.||   
RBAM_000500__    545 AGGAACAGGATGAACAATAA    564


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