Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00063 and RBAM_000400

See Amino acid alignment / Visit BSNT_00063 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:49
# Commandline: needle
#    -asequence dna-align/BSNT_00063___holB.1.9828.seq
#    -bsequence dna-align/RBAM_000400___holB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00063___holB-RBAM_000400___holB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00063___holB-RBAM_000400___holB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00063___holB
# 2: RBAM_000400___holB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 991
# Identity:     839/991 (84.7%)
# Similarity:   839/991 (84.7%)
# Gaps:           2/991 ( 0.2%)
# Score: 3575.0
# 
#
#=======================================

BSNT_00063___      1 ATGGCAATATCTTGGAAGGAAATGAACGAGCTTCAGCCCAGAGTGATGAA     50
                     |||||||||||.|||||||||||||.||.||..|||||||||||||||..
RBAM_000400__      1 ATGGCAATATCATGGAAGGAAATGACCGGGCAGCAGCCCAGAGTGATGCG     50

BSNT_00063___     51 GCTTTTATATAATAGTATTGAGAAGGACAGACTATCACACGCTTATTTGT    100
                     ||||||..||||.||.|||||.|||.|.||.||.||.|||||.|||.|||
RBAM_000400__     51 GCTTTTGCATAACAGCATTGAAAAGAAAAGGCTTTCTCACGCATATCTGT    100

BSNT_00063___    101 TTGAGGGAAAAAAAGGAACAGGCAAGCTTGATGCCGCGCTGCTTCTTGCA    150
                     ||||.||.||||||||.||.||.||..|.||||||||.||||||||.|||
RBAM_000400__    101 TTGAAGGCAAAAAAGGTACGGGTAAATTGGATGCCGCACTGCTTCTCGCA    150

BSNT_00063___    151 AAAAGCTTCTTTTGTCTGGAGGATGGCGCGGAGCCTTG-TGAGAGCTGCC    199
                     ||||||||.|||||.||.||.||.||..|.|||||||| .|.||| ||||
RBAM_000400__    151 AAAAGCTTTTTTTGCCTTGAAGACGGGACTGAGCCTTGCGGGGAG-TGCC    199

BSNT_00063___    200 GAAACTGTAAACGGATAGAGTCAGGGAACCATCCTGATCTCCATCTTGTT    249
                     |.||||||||.||.||.||.||.||.||||||||.||.||.|||.|.|||
RBAM_000400__    200 GGAACTGTAAGCGTATTGAATCCGGAAACCATCCCGACCTGCATGTGGTT    249

BSNT_00063___    250 CAGCCTGATGGCTTATCAATCAAAAAGGCGCAAATTCAAGCGCTCCAAGA    299
                     |||||.||.||.|||||.||.||||||||.||.||.|||.||||.||.||
RBAM_000400__    250 CAGCCCGACGGATTATCCATTAAAAAGGCTCAGATCCAATCGCTTCAGGA    299

BSNT_00063___    300 AGAGTTTTCTAAGACAGGACTTGAATCGCATAAAAAGCTGTATATTATTT    349
                     ||||||||||||.|||||||||||||||||||||||||||||.|||||.|
RBAM_000400__    300 AGAGTTTTCTAAAACAGGACTTGAATCGCATAAAAAGCTGTACATTATAT    349

BSNT_00063___    350 CGCACGCAGATCAAATGACAGCAAATGCGGCGAACAGCCTGCTGAAATTT    399
                     |.||.||.|||||||||||..||||||||||.|||||.||||||||||||
RBAM_000400__    350 CCCATGCGGATCAAATGACGACAAATGCGGCAAACAGTCTGCTGAAATTT    399

BSNT_00063___    400 TTAGAAGAACCGAACAAAGACACAATGGCCGTCCTCATCACTGAGCAGCC    449
                     |||||.||.||||...||||.||.||.||..|.||.||.||||||||||.
RBAM_000400__    400 TTAGAGGAGCCGAGTCAAGATACCATCGCAATTCTTATTACTGAGCAGCT    449

BSNT_00063___    450 CCAAAGGTTATTGGATACCATCATTTCAAGATGCCAAACCCTTCCTTTTC    499
                     |||..|..||.|||||||||||.||||.|||||.||....|||||.||.|
RBAM_000400__    450 CCACCGAATACTGGATACCATCGTTTCGAGATGTCAGGTTCTTCCGTTCC    499

BSNT_00063___    500 AGCCTTTGCAACCGAAAGCAATTGAAGATAGACTGATCGAACAGGACGTC    549
                     ||||..|.||.||||||||.||.|||||.||||||||.||||||||.||.
RBAM_000400__    500 AGCCGCTTCAGCCGAAAGCCATAGAAGAAAGACTGATTGAACAGGAAGTG    549

BSNT_00063___    550 TCGCCTCATATGGCAAGGCTTCTGGCCAACATGACCAATAATGTAGCAGA    599
                     ...|||||.|||||..||||..|.||.||.|||||.||||||.|.||.||
RBAM_000400__    550 AGCCCTCACATGGCCCGGCTCTTAGCAAATATGACAAATAATATTGCGGA    599

BSNT_00063___    600 AGCAGTCGAATTAAGTCGAAATGATGAGTTTGCAGAGTCTAGAGCGAAAG    649
                     |||||||||||||||||||||||||||||||||||||||.||||||||||
RBAM_000400__    600 AGCAGTCGAATTAAGTCGAAATGATGAGTTTGCAGAGTCCAGAGCGAAAG    649

BSNT_00063___    650 TGATAAAATTGTATGAAGTCCTACACCAGCGGAAAGGACATGCTTTTTTC    699
                     ||||||||||||||||||||.||||.|||||||||||.|||||.||||||
RBAM_000400__    650 TGATAAAATTGTATGAAGTCTTACATCAGCGGAAAGGGCATGCCTTTTTC    699

BSNT_00063___    700 TTTATTCAAGATCAATGGATGCCCTTTTTCAAAGAAAAAACCCATCAAGA    749
                     ||.|||||.|||||.|||.|||||||||||||||||||||||||||||||
RBAM_000400__    700 TTCATTCAGGATCAGTGGGTGCCCTTTTTCAAAGAAAAAACCCATCAAGA    749

BSNT_00063___    750 AATGGGTCTTGATATGCTCTTATTGATATATCGTGATGTGTTGTCCATCC    799
                     ||||||||||||||||||||||||||||||.||||||||.||.|||||||
RBAM_000400__    750 AATGGGTCTTGATATGCTCTTATTGATATACCGTGATGTATTATCCATCC    799

BSNT_00063___    800 AAATAGGAAATGAAGATAAATTGATTTATCAAGACTTATTCCAATCAATA    849
                     ||||.|||||||||||||||.|||||||||||||||||||||||||||||
RBAM_000400__    800 AAATTGGAAATGAAGATAAACTGATTTATCAAGACTTATTCCAATCAATA    849

BSNT_00063___    850 AAACAGCATGCGCTACAATCAACACAACAAAGCGTTACGAATCAGATACT    899
                     ||||||||||||||.||||..||||||||||||||||||||.||.||.||
RBAM_000400__    850 AAACAGCATGCGCTGCAATTTACACAACAAAGCGTTACGAACCAAATTCT    899

BSNT_00063___    900 TGCTGTTTTAGAAGCAAAGAAACGGCTTCATTCCAATGTGAATGTACAAG    949
                     .|||||||||||||||||.||||||||||||||||||||||||||.||.|
RBAM_000400__    900 CGCTGTTTTAGAAGCAAAAAAACGGCTTCATTCCAATGTGAATGTGCAGG    949

BSNT_00063___    950 GATTAATGGAGCACTTGGTGTTAATGTTGCAGGAGGGATAA    990
                     ||||||||||||||||||||||||.||||||||||||||||
RBAM_000400__    950 GATTAATGGAGCACTTGGTGTTAACGTTGCAGGAGGGATAA    990


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