Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00062 and RBAM_000390

See Amino acid alignment / Visit BSNT_00062 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:49
# Commandline: needle
#    -asequence dna-align/BSNT_00062___yaaR.1.9828.seq
#    -bsequence dna-align/RBAM_000390___yaaR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00062___yaaR-RBAM_000390___yaaR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00062___yaaR-RBAM_000390___yaaR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00062___yaaR
# 2: RBAM_000390___yaaR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 441
# Identity:     351/441 (79.6%)
# Similarity:   351/441 (79.6%)
# Gaps:           0/441 ( 0.0%)
# Score: 1395.0
# 
#
#=======================================

BSNT_00062___      1 GTGAAAATTAATAAAGATATACGTACATTTATAGATAATAAGCAGATTCC     50
                     ||||||||.|||...||..|||||||||||||.||.||.||||||...||
RBAM_000390__      1 GTGAAAATAAATTCTGACTTACGTACATTTATTGAGAAAAAGCAGCAGCC     50

BSNT_00062___     51 CTCTGTGAAAACATCTGAGATCACGGCATCGTTTAAAACATCAATGGAAA    100
                     ..||...|||.|..|.|||.|..|.|.|.|.|||||||..||||||||.|
RBAM_000390__     51 TGCTTATAAAGCGGCAGAGCTTTCCGGAACATTTAAAAGTTCAATGGACA    100

BSNT_00062___    101 ACCAAAGCAGCAAAATGAAGCTTGATCAGCTTACCAGGCTGTTATCTGAT    150
                     .||||||||||||..||||..||||||||||.|.||||.|.|||.|.|||
RBAM_000390__    101 GCCAAAGCAGCAAGCTGAAATTTGATCAGCTGAGCAGGTTCTTAACGGAT    150

BSNT_00062___    151 ATAGAAGCATTCGGAAAAAGGCTAACGAAATCTCGGAATTTTAAAGACTT    200
                     ||||||.|.|||||.||||||||.|||||.||..|.||.||.||||||||
RBAM_000390__    151 ATAGAAACGTTCGGGAAAAGGCTGACGAAGTCGAGAAACTTCAAAGACTT    200

BSNT_00062___    201 AGCGAGATTTAAAGGACTTGTGAAACGTTTTGTCAAAGAAGCTGTGGACA    250
                     |||||.|||.||||||.|.||.|||||||||||.|||||.||.||.||||
RBAM_000390__    201 AGCGAAATTCAAAGGATTGGTAAAACGTTTTGTAAAAGAGGCCGTAGACA    250

BSNT_00062___    251 GCGGCCTTTCACATGAAACATCGAAAAGCTTTGACCTTTACGGGAACAGC    300
                     ||||..|.||.|||||.||...|||||||||||||||.|||||.|.||||
RBAM_000390__    251 GCGGATTATCGCATGAGACGGAGAAAAGCTTTGACCTGTACGGCAGCAGC    300

BSNT_00062___    301 AGAACGCTGGGACTTGTGAAAGAAATAGATGACAAATTGATACAGCTTAC    350
                     .|.||.|||||.||||||||||||||||||.|.|||.||.|.|||||.||
RBAM_000390__    301 CGGACTCTGGGGCTTGTGAAAGAAATAGATCAAAAACTGCTTCAGCTGAC    350

BSNT_00062___    351 GGAAGAGATGATGGATCAGGAAAAACCGGCAATTGATTTGCTGGAGCGTA    400
                     ||||||.|||.|.||||||||||||||||||||||||||||||||.||.|
RBAM_000390__    351 GGAAGAAATGTTAGATCAGGAAAAACCGGCAATTGATTTGCTGGATCGAA    400

BSNT_00062___    401 TTGGCGAAATAAAAGGTTTATTAATTAACCTTTACACATAG    441
                     |.||.|||||||||||||||||.||||||||||||||||||
RBAM_000390__    401 TCGGAGAAATAAAAGGTTTATTGATTAACCTTTACACATAG    441


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