Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00061 and RBAM_000380

See Amino acid alignment / Visit BSNT_00061 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:49
# Commandline: needle
#    -asequence dna-align/BSNT_00061___yaaQ.1.9828.seq
#    -bsequence dna-align/RBAM_000380___yaaQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00061___yaaQ-RBAM_000380___yaaQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00061___yaaQ-RBAM_000380___yaaQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00061___yaaQ
# 2: RBAM_000380___yaaQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 331
# Identity:     284/331 (85.8%)
# Similarity:   284/331 (85.8%)
# Gaps:           2/331 ( 0.6%)
# Score: 1220.0
# 
#
#=======================================

BSNT_00061___      1 ATGAAATTGATAGTGGCAGTTGTACAAGATCAGGACAGCAACAGACTTTT     50
                     ||||||.|.|||||||||||.||.||.|||||||||||||||||.|||||
RBAM_000380__      1 ATGAAACTAATAGTGGCAGTGGTGCAGGATCAGGACAGCAACAGGCTTTT     50

BSNT_00061___     51 GAAAACCTTAACGGATCACAACTTCAGAGTCACAAAGCTTGCGACGACAG    100
                     ||||...|||||.||.|||||||||||.||.||.|||||||||||.||||
RBAM_000380__     51 GAAAGTATTAACCGACCACAACTTCAGGGTGACGAAGCTTGCGACAACAG    100

BSNT_00061___    101 GAGGATTTCTTAAATCAGGCAATACAACGTTTATGATCGGTGTCGAGGAT    150
                     |.|||||.|||||||||||||||||.||||||||||||||.||.||.|||
RBAM_000380__    101 GCGGATTCCTTAAATCAGGCAATACGACGTTTATGATCGGGGTGGAAGAT    150

BSNT_00061___    151 ATACGCGTCAATAAAGCGTTGAGTCTCATTAAAGAAAACGGGCAG-AAAC    199
                     ||.||.|||.||||||||.|.||.|||||||||||.|| .|||.| ||||
RBAM_000380__    151 ATCCGTGTCGATAAAGCGCTCAGCCTCATTAAAGAGAA-TGGCTGTAAAC    199

BSNT_00061___    200 GTGATCAGATGATTGCCCCTGTATCTCCAATGGGCGGAAATGCTGATTCC    249
                     |||||||||||||||||||.|||||.||.||||||||.|||||.||||||
RBAM_000380__    200 GTGATCAGATGATTGCCCCGGTATCCCCGATGGGCGGGAATGCGGATTCC    249

BSNT_00061___    250 TATGTCCCTTATCCAGTCGAAGTTGAAGTTGGCGGAGCGACAGTATTTGT    299
                     ||.||.||.|||||.||||||||.|||||.|||||||||||.||.|||||
RBAM_000380__    250 TACGTTCCATATCCCGTCGAAGTGGAAGTCGGCGGAGCGACGGTCTTTGT    299

BSNT_00061___    300 CCTTCCAGTCGATGAATTTCATCAATTTTAA    330
                     |||.||.||||||||||||||||||||||||
RBAM_000380__    300 CCTCCCGGTCGATGAATTTCATCAATTTTAA    330


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