Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00057 and RBAM_000340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:49
# Commandline: needle
# -asequence dna-align/BSNT_00057___xpaC.1.9828.seq
# -bsequence dna-align/RBAM_000340___xpaC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00057___xpaC-RBAM_000340___xpaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00057___xpaC-RBAM_000340___xpaC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00057___xpaC
# 2: RBAM_000340___xpaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity: 419/671 (62.4%)
# Similarity: 419/671 (62.4%)
# Gaps: 112/671 (16.7%)
# Score: 1213.0
#
#
#=======================================
BSNT_00057___ 1 ATGCAGAGATTTTTTCACTTTTTGATGTGGA-GTTTAACTAGCAGTGCGA 49
|||.|....|||.||||.|.|.|||..|||| |.|| ||||.
RBAM_000340__ 1 ATGAAACCGTTTATTCAATATATGAAATGGACGCTT---------TGCGG 41
BSNT_00057___ 50 C--------TTTTGTTTTCATT----GGAATATTGAGCTTTTTT------ 81
| |||||| ||| ||.||| |.|||.|||
RBAM_000340__ 42 CAGCACAGTTTTTGT----ATTAGCGGGGATA---ACCTTCTTTACGATA 84
BSNT_00057___ 82 -GGTTTAAACCAGTCGCTTTTTTTATCTATT---GTTTAT---GGGCTTG 124
||..|.|.|| ||||.|.|||| .||||| |||| .|
RBAM_000340__ 85 GGGCATCAGCC---------TTTTCTGTATTCGCTTTTATACGGGGC-AG 124
BSNT_00057___ 125 CTTCTGGAGCAGC--------CGTATATATAGCTGGCATCTGGAATGC-A 165
|....|||||.|| || ||.||..|.|||||||| |
RBAM_000340__ 125 CCAGCGGAGCCGCAGCCAGTGCG--------GCCGGTCTGTGGAATGCGA 166
BSNT_00057___ 166 AGACGGTTATTTCTTAAAAA-------GCATGAATTGACAGGAAGAGAGT 208
|| ||..|.||| ||||||| || |||||.|||.|||.|
RBAM_000340__ 167 AG-CGTCTCTTT-TTAAAAAAACACCGGC------TGACAAGAAAAGAAT 208
BSNT_00057___ 209 ATGCTTACATTAA-GAAAAACTTAGAGGAAGCAAGGCAGAAAATGGTCCG 257
|||||||.||.|| |||||.||| ||||||||||.|...|||||..||||
RBAM_000340__ 209 ATGCTTATATCAAGGAAAATCTT-GAGGAAGCAAAGGGTAAAATCATCCG 257
BSNT_00057___ 258 TCTTAGGAAAAC------CTTGTTTCAGGCTAAAAGCATTCAAATGTTTA 301
.|||.| | ||| ||||...|||||||.||.||||||.|.|
RBAM_000340__ 258 -ATTACG----CAGGGCGCTT-TTTCGCTCTAAAAGTATACAAATGCTGA 301
BSNT_00057___ 302 AGCAAAATGCAGAAATGCTAAGGATTGTGA----GAAGGATTTATCTCCT 347
||||.||||||||.||.||..|||| | ||.|.||.|||||.||
RBAM_000340__ 302 AGCAGAATGCAGAGATACTGCGGAT----AACCCGACGAATATATCTGCT 347
BSNT_00057___ 348 CACCAAAAAAGAGCCAAAGCGGTTTTATCAGGCAGAACGATTTTTTTATC 397
|||.||..|.|||||.|||||.||||||||||||||.||.||.|.|||||
RBAM_000340__ 348 CACAAAGCAGGAGCCGAAGCGTTTTTATCAGGCAGAGCGTTTCTATTATC 397
BSNT_00057___ 398 AAACTCTCGATTCGGTTGTTGAATTGACAGAGAAGTATGCTTTTCTATCA 447
||||.||.|||||.|||||.|||.||||.||.|||||||||.|.||.||.
RBAM_000340__ 398 AAACGCTTGATTCTGTTGTGGAACTGACGGAAAAGTATGCTCTGCTCTCC 447
BSNT_00057___ 448 TCTCACCCAAAAAAAAGCAAAGAACTGTCGATGTCGTTAAGTGAGACACG 497
||.||.||...|||||..|||||..|.||.|||||.||.||||||||..|
RBAM_000340__ 448 TCACAGCCGCGAAAAAATAAAGATTTATCAATGTCCTTGAGTGAGACGAG 497
BSNT_00057___ 498 CATCACTCTTACTGAATTGACCAAGCGTTTAGAGGAAGATTTAACTCAGG 547
.||.|||||..|.||..|..|||...|..|.||.||.|||.| |||.|
RBAM_000340__ 498 AATGACTCTGGCAGAGCTCTCCAGAAGGCTGGAAGAGGATCT---TCATG 544
BSNT_00057___ 548 CA---ATGGATGATGAATTTGACGAGTTGCAGTTTGAATTAGACGCAGCA 594
.| |||.|.||.||..|.|||||..||||.|||||||||||....|||
RBAM_000340__ 545 AACTGATGAAGGAGGACATCGACGACCTGCACTTTGAATTAGATATGGCA 594
BSNT_00057___ 595 AAACATTCATTAAAGAAATAA 615
||.||||||.|.|..||||||
RBAM_000340__ 595 AAGCATTCACTGAGAAAATAA 615
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