Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00043 and RBAM_000290

See Amino acid alignment / Visit BSNT_00043 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:49
# Commandline: needle
#    -asequence dna-align/BSNT_00043___bofA.1.9828.seq
#    -bsequence dna-align/RBAM_000290___bofA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00043___bofA-RBAM_000290___bofA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00043___bofA-RBAM_000290___bofA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00043___bofA
# 2: RBAM_000290___bofA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 264
# Identity:     191/264 (72.3%)
# Similarity:   191/264 (72.3%)
# Gaps:           0/264 ( 0.0%)
# Score: 663.0
# 
#
#=======================================

BSNT_00043___      1 ATGGAGCCTATTTTTATTATTGGGATTATTTTAGGATTGGTTATTCTTCT     50
                     |||||||||.||||.|||||.||..|.|||.|.||..|||||..|.|.||
RBAM_000290__      1 ATGGAGCCTTTTTTCATTATCGGTTTGATTGTCGGTCTGGTTGCTTTGCT     50

BSNT_00043___     51 TTTTTTATCAGGTTCAGCTGCGAAGCCTTTAAAGTGGATTGGCATCACAG    100
                     ||||||||..||...|.||.|.||.||.||||..||||||||..|.||.|
RBAM_000290__     51 TTTTTTATGGGGAGTATCTTCAAAACCGTTAAGATGGATTGGTGTGACTG    100

BSNT_00043___    101 CTGTTAAATTTGTGGCAGGTGCTTTGCTGCTGGTTTGTGTAAATATGTTT    150
                     |..||||.|||.|.||.|||||..|.||||||||..||||.||..||||.
RBAM_000290__    101 CGATTAAGTTTATTGCCGGTGCGATTCTGCTGGTGGGTGTGAACTTGTTC    150

BSNT_00043___    151 GGCGGCAGTCTTGGCATTCATGTGCCGATTAATCTGGTTACAACAGCTAT    200
                     ||.||||||||.||.||||||.|.||..||||.|||.|||||||.|..||
RBAM_000290__    151 GGAGGCAGTCTCGGTATTCATATCCCTGTTAACCTGATTACAACGGGCAT    200

BSNT_00043___    201 CAGCGGAATTTTAGGGATACCCGGAATAGCTGCGTTAGTCGTTATTAAGC    250
                     ||||||.|||.|.|||||.|||||.||.||.||.||..|.||.|||||.|
RBAM_000290__    201 CAGCGGGATTCTGGGGATTCCCGGCATCGCAGCTTTGATAGTCATTAAAC    250

BSNT_00043___    251 AATTTATCATTTAA    264
                     ..||.|||||||||
RBAM_000290__    251 GCTTCATCATTTAA    264


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