Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00040 and RBAM_000260

See Amino acid alignment / Visit BSNT_00040 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:48
# Commandline: needle
#    -asequence dna-align/BSNT_00040___yaaK.1.9828.seq
#    -bsequence dna-align/RBAM_000260___yaaK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00040___yaaK-RBAM_000260___yaaK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00040___yaaK-RBAM_000260___yaaK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00040___yaaK
# 2: RBAM_000260___yaaK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 330
# Identity:     255/330 (77.3%)
# Similarity:   255/330 (77.3%)
# Gaps:          27/330 ( 8.2%)
# Score: 1083.0
# 
#
#=======================================

BSNT_00040___      1 ---------------------------ATGCAAAAAATGATGAAACAAAT     23
                                                |||||||||||||||||||||||
RBAM_000260__      1 TTGAATATGCGTGGCGGAATGGGAAACATGCAAAAAATGATGAAACAAAT     50

BSNT_00040___     24 GCAAAAAATGCAAAAGGACATGGCGAAGGCTCAAGAAGAGCTTGCAGAAA     73
                     ||||||||||||||||||.||||||||||||||.||.||||||||.||||
RBAM_000260__     51 GCAAAAAATGCAAAAGGATATGGCGAAGGCTCAGGAGGAGCTTGCTGAAA    100

BSNT_00040___     74 AGGTTGTTGAAGGAACTGCAGGCGGCGGTATGGTAACAGTAAAAGCAAAC    123
                     |.||..|||||||.||.|||||||||||||||||.||.|||||||..|||
RBAM_000260__    101 AAGTGCTTGAAGGCACAGCAGGCGGCGGTATGGTGACTGTAAAAGTCAAC    150

BSNT_00040___    124 GGCCAAAAAGAAATCCTGGATGTTATCATCAAAGAAGAAGTCGTTGATCC    173
                     ||||||||||||.|..|.||..||..|||.||||||||||||||||||||
RBAM_000260__    151 GGCCAAAAAGAAGTTGTAGACATTGCCATTAAAGAAGAAGTCGTTGATCC    200

BSNT_00040___    174 TGAAGATATTGATATGCTTCAAGATTTAGTGCTTGCTGCAACGAATGAAG    223
                     .||||||||.||.||||||||.||..|.||.||||||||.||.||.||.|
RBAM_000260__    201 GGAAGATATCGAAATGCTTCAGGACCTGGTTCTTGCTGCGACAAACGACG    250

BSNT_00040___    224 CTTTGAAAAAAGTTGACGAAATCACAAACGAAACAATGGGTCAATTTACA    273
                     |..|.||||||||.||.||.||.||.||.||.||||||||.|||||||||
RBAM_000260__    251 CCCTCAAAAAAGTGGATGACATGACGAATGAGACAATGGGACAATTTACA    300

BSNT_00040___    274 AAGGGAATGAACATGCCAGGTTTATTCTAG    303
                     ||.|||||||||||.||.||||||||||||
RBAM_000260__    301 AAAGGAATGAACATACCGGGTTTATTCTAG    330


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