Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00039 and RBAM_000250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:48
# Commandline: needle
# -asequence dna-align/BSNT_00039___dnaX.1.9828.seq
# -bsequence dna-align/RBAM_000250___dnaX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00039___dnaX-RBAM_000250___dnaX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00039___dnaX-RBAM_000250___dnaX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00039___dnaX
# 2: RBAM_000250___dnaX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1703
# Identity: 1376/1703 (80.8%)
# Similarity: 1376/1703 (80.8%)
# Gaps: 22/1703 ( 1.3%)
# Score: 5592.0
#
#
#=======================================
BSNT_00039___ 1 GTGAGTTACCAAGCTTTATATCGAGTATTCAGGCCTCAGCGCTTTGAAGA 50
|||.|||||||||||||||||||||||||.||||||||||..||||||||
RBAM_000250__ 1 GTGGGTTACCAAGCTTTATATCGAGTATTTAGGCCTCAGCAGTTTGAAGA 50
BSNT_00039___ 51 TGTGGTCGGACAAGAACACATTACAAAAACGCTGCAAAATGCCCTTTTGC 100
||||||||||||.|||||||||||.|||||||||||||||||||||||||
RBAM_000250__ 51 TGTGGTCGGACAGGAACACATTACGAAAACGCTGCAAAATGCCCTTTTGC 100
BSNT_00039___ 101 AAAAAAAGTTTTCTCACGCCTATCTGTTTTCCGGGCCAAGAGGAACCGGA 150
||||.||.||||||||.||.|||||||||||.||.||..|.|||||.|||
RBAM_000250__ 101 AAAAGAAATTTTCTCATGCATATCTGTTTTCTGGACCGCGGGGAACGGGA 150
BSNT_00039___ 151 AAAACCAGTGCAGCCAAAATATTTGCTAAGGCTGTCAACTGTGAACATGC 200
||||||||||||||.|||||||||||.||.||.|||||||||||.||.||
RBAM_000250__ 151 AAAACCAGTGCAGCTAAAATATTTGCGAAAGCAGTCAACTGTGAGCACGC 200
BSNT_00039___ 201 TCCTGTTGATGAGCCATGCAACGAATGTGCGGCCTGTAAAGGGATAACAA 250
.||.||.||.||.||.|||||.|||||||||||.||.||.|||||.||||
RBAM_000250__ 201 CCCCGTAGAAGAACCGTGCAATGAATGTGCGGCGTGCAAGGGGATCACAA 250
BSNT_00039___ 251 ACGGGTCAATATCCGATGTCATAGAAATTGACGCCGCTTCTAATAACGGT 300
||||.||.|||||.|||||.||.|||||.||.||.||.||.||||||||.
RBAM_000250__ 251 ACGGCTCTATATCAGATGTGATTGAAATAGATGCGGCGTCGAATAACGGC 300
BSNT_00039___ 301 GTTGATGAGATTCGTGACATTCGCGATAAAGTGAAGTTTGCCCCATCGGC 350
||.||.||.||.||.|||||.||.||.|||||.||.||.|||||.|||||
RBAM_000250__ 301 GTAGACGAAATCCGCGACATCCGTGACAAAGTAAAATTCGCCCCGTCGGC 350
BSNT_00039___ 351 CGTCACATATAAGGTATATATCATAGATGAGGTGCATATGCTTTCTATCG 400
||||||.||.||.||||||||.||||||||||||||||||||.|||||||
RBAM_000250__ 351 CGTCACCTACAAAGTATATATTATAGATGAGGTGCATATGCTCTCTATCG 400
BSNT_00039___ 401 GCGCTTTTAATGCATTACTAAAAACATTAGAAGAGCCGCCTGAGCATTGT 450
||||.||.|||||..|.||.|||||..|.|||||.|||||.|..|||||.
RBAM_000250__ 401 GCGCATTCAATGCGCTTCTGAAAACGCTGGAAGAACCGCCGGCACATTGC 450
BSNT_00039___ 451 ATCTTCATATTAGCAACAACTGAACCGCACAAAATTCCTTTAACCATTAT 500
||.|||||||||||.||.|||||.||.||.||.|||||||||||||||||
RBAM_000250__ 451 ATTTTCATATTAGCTACGACTGAGCCTCATAAGATTCCTTTAACCATTAT 500
BSNT_00039___ 501 CTCTAGATGTCAGCGTTTTGACTTTAAACGAATTACCTCCCAAGCGATTG 550
|||.||||||||||||||||||||.|||||.|||||.|||.||||.||||
RBAM_000250__ 501 CTCCAGATGTCAGCGTTTTGACTTCAAACGGATTACATCCAAAGCAATTG 550
BSNT_00039___ 551 TAGGGCGCATGAATAAAATTGTTGATGCTGAACAGCTGCAAGTGGAGGAA 600
|.||.||.|||||.|.|||.||.|||||.||.||||||.|.|||||.|||
RBAM_000250__ 551 TCGGACGAATGAAGACAATCGTCGATGCAGAGCAGCTGAAGGTGGAAGAA 600
BSNT_00039___ 601 GGATCGCTGGATATCATCGCGAGTGCTGCAGACGGAGGGATGAGGGATGC 650
|||.|.||.||||||||.|||||||||||.||||||||.||||||||.||
RBAM_000250__ 601 GGAGCCCTTGATATCATAGCGAGTGCTGCGGACGGAGGAATGAGGGACGC 650
BSNT_00039___ 651 CCTGAGCCTTCTTGATCAGGCCATATCATTCAGCGGCGATATCCTGAAAG 700
.||||||||.||.|||||.|||.||||||||||||||||....|||...|
RBAM_000250__ 651 GCTGAGCCTGCTCGATCAAGCCGTATCATTCAGCGGCGAGGAGCTGTCGG 700
BSNT_00039___ 701 TCGAAGATGCGCTTTTAATTACGGGTGCTGTTTCTCAATTATATATCGGG 750
|.||.|||||..|..|.|||||.||.||.||||||||....|||||.||.
RBAM_000250__ 701 TGGATGATGCATTGCTCATTACCGGAGCCGTTTCTCAGCACTATATTGGA 750
BSNT_00039___ 751 AAGCTTGCACAATCCCTGCATGATAAAAACGTTTCTGACGCACTGGAAAC 800
||.||.|||....|.||.||....|||.|.|||||.||.|||.|||||||
RBAM_000250__ 751 AAACTGGCATCTGCTCTTCACCGCAAACAGGTTTCCGAGGCATTGGAAAC 800
BSNT_00039___ 801 ATTAAATGAATTGCTTCAGCAAGGAAAAGATCCAGCTAAGCTGATAGAAG 850
|.|.|||||||||||.||||||||.||||||.|.||.||.|||||.||||
RBAM_000250__ 801 ACTGAATGAATTGCTCCAGCAAGGGAAAGATGCGGCCAAACTGATTGAAG 850
BSNT_00039___ 851 ATATGATTTTCTATTTCAGGGACATGCTGCTGTACAAAACAGCCCCTGGC 900
||||||||||||||||||||||.|||||..|||||.|..|.||.||.||.
RBAM_000250__ 851 ATATGATTTTCTATTTCAGGGATATGCTCTTGTACCAGGCCGCTCCCGGT 900
BSNT_00039___ 901 TTAGAGGGAGTGCTTGAGAAAGTAAAAGTCGATGAAACGTTCCGGAAACT 950
|||||.|||||.||.|||||.||.||.||||||||||||||.|||||.||
RBAM_000250__ 901 TTAGAAGGAGTCCTGGAGAAGGTGAAGGTCGATGAAACGTTTCGGAATCT 950
BSNT_00039___ 951 AAGTGAACAAATTCCGGCTCAGGCCCTATATGAAATGATTGATATTCTGA 1000
.||.|...|.||.|||||.|..||..|||||||.|||||||||||.||||
RBAM_000250__ 951 GAGCGGTGACATACCGGCCCCCGCTTTATATGAGATGATTGATATCCTGA 1000
BSNT_00039___ 1001 ACAAGAGCCATCAGGAAATGAAATGGACAAATCATCCGCGTATCTTTTTC 1050
||||.|||||||||||||||||.|||||.||.||.||..|.||||||||.
RBAM_000250__ 1001 ACAAAAGCCATCAGGAAATGAAGTGGACGAACCACCCAAGAATCTTTTTT 1050
BSNT_00039___ 1051 GAAGTGGCCGTTGTGAAGATTTGCCAAACCTCACATCAATCTGCTGCTGA 1100
||||||||.||.|||||.||.|||||.||..||||.|||||.||.|..||
RBAM_000250__ 1051 GAAGTGGCTGTCGTGAAAATATGCCAGACGGCACAGCAATCCGCCGGAGA 1100
BSNT_00039___ 1101 TCTCCCGGAAGTGGATATGCTGATGAAAAAAATCCAGCAGCTCGAACAGG 1150
..||||.||.||.|..|||||||||||.||.||.||||||||.||.||||
RBAM_000250__ 1101 CATCCCTGAGGTCGGCATGCTGATGAATAAGATTCAGCAGCTTGAGCAGG 1150
BSNT_00039___ 1151 AAGTAGAGCGGCTCAAAACAACGGGCATAAAAG--CAGCTGCGGAAAGC- 1197
|||||||..||||.|||||..|.||..|.||.| |||.| |||||||
RBAM_000250__ 1151 AAGTAGAAAGGCTGAAAACCTCTGGTGTGAAGGTTCAGAT--GGAAAGCG 1198
BSNT_00039___ 1198 --CCGAAAAAAGAAGCGCCGCGTGTGCCAAAGGGCGGGAAATCCAATTAC 1245
||| ||||||||.||||||...|.|||.|||||.|||..|.|||||
RBAM_000250__ 1199 CTCCG---AAAGAAGCTCCGCGTCCTCAAAAAGGCGGAAAAAGCCATTAC 1245
BSNT_00039___ 1246 AAAGCGCCAGTAGGCAGAATTCATGAGATTTTGAAGGAAGCCACAAGACC 1295
|||||.||.||.||.||||||||||||||.||||||||||||||.|||||
RBAM_000250__ 1246 AAAGCTCCGGTCGGAAGAATTCATGAGATATTGAAGGAAGCCACCAGACC 1295
BSNT_00039___ 1296 GGATCTTGATCTGCTCAGAAACAGTTGGGGCAAGCTTCTTGCTCATCTCA 1345
.||.|||||.|.|||.|.||.|||.|||||||||||.||.||.||.||.|
RBAM_000250__ 1296 TGAACTTGAACAGCTTAAAAGCAGCTGGGGCAAGCTGCTGGCACACCTGA 1345
BSNT_00039___ 1346 AACAGCAAAACAAAGTATCGCATGCCGCTTTGCTGAATGACAGTGAACCT 1395
|||||||.||.||.||.||.|||||.|||.||.||||||||||||||||.
RBAM_000250__ 1346 AACAGCAGAATAAGGTGTCTCATGCGGCTCTGTTGAATGACAGTGAACCG 1395
BSNT_00039___ 1396 GTGGCTGCCGGATCGGC------GGCATTTGTTCTGAAATTCAAATATGA 1439
||||||| |.|| |||||||||.||.|||||.|||||.||
RBAM_000250__ 1396 GTGGCTG------CTGCTCAAAAGGCATTTGTGCTTAAATTTAAATACGA 1439
BSNT_00039___ 1440 AATTCATTGTAAAATGGTTGCTGAGGATAACAACGGAGTCCGGACTAATC 1489
|||.|||||||||||||||||.||.||.||.|||||||||||.||.||||
RBAM_000250__ 1440 AATCCATTGTAAAATGGTTGCAGAAGACAATAACGGAGTCCGTACGAATC 1489
BSNT_00039___ 1490 TTGAGCAGATTTTAGAATCGATGCTCGGAAAAAGAATGGATTTGATTGGC 1539
||||.||||||.|.|||||.||||||||.|||||||||||||||||||||
RBAM_000250__ 1490 TTGAACAGATTCTCGAATCAATGCTCGGGAAAAGAATGGATTTGATTGGC 1539
BSNT_00039___ 1540 GTTCCAGAAGCACAATGGGGTAAAATAAGAGAAGAATTTTTAGAAGATCA 1589
|||||.||||||||||||||||||||||||||||||||||||.|.|||||
RBAM_000250__ 1540 GTTCCGGAAGCACAATGGGGTAAAATAAGAGAAGAATTTTTAAATGATCA 1589
BSNT_00039___ 1590 TCAGCAGGAAAATGAAGGATCAAATGAACCGGCTGAAGAAGACCCGCTTA 1639
.||||||||||.||||||||||||.|||||||||||||||||.|||||.|
RBAM_000250__ 1590 CCAGCAGGAAAGTGAAGGATCAAACGAACCGGCTGAAGAAGATCCGCTGA 1639
BSNT_00039___ 1640 TTGCCGAAGCGAAAAAGCTTGTTGGAGCGGATTTAATTGAAATAAAAGAC 1689
||||.||.||||||||.|||||.||||||||||||||.||||||||||||
RBAM_000250__ 1640 TTGCAGAGGCGAAAAAACTTGTCGGAGCGGATTTAATCGAAATAAAAGAC 1689
BSNT_00039___ 1690 TAA 1692
|||
RBAM_000250__ 1690 TAA 1692
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