Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00039 and RBAM_000250

See Amino acid alignment / Visit BSNT_00039 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:48
# Commandline: needle
#    -asequence dna-align/BSNT_00039___dnaX.1.9828.seq
#    -bsequence dna-align/RBAM_000250___dnaX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00039___dnaX-RBAM_000250___dnaX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00039___dnaX-RBAM_000250___dnaX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00039___dnaX
# 2: RBAM_000250___dnaX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1703
# Identity:    1376/1703 (80.8%)
# Similarity:  1376/1703 (80.8%)
# Gaps:          22/1703 ( 1.3%)
# Score: 5592.0
# 
#
#=======================================

BSNT_00039___      1 GTGAGTTACCAAGCTTTATATCGAGTATTCAGGCCTCAGCGCTTTGAAGA     50
                     |||.|||||||||||||||||||||||||.||||||||||..||||||||
RBAM_000250__      1 GTGGGTTACCAAGCTTTATATCGAGTATTTAGGCCTCAGCAGTTTGAAGA     50

BSNT_00039___     51 TGTGGTCGGACAAGAACACATTACAAAAACGCTGCAAAATGCCCTTTTGC    100
                     ||||||||||||.|||||||||||.|||||||||||||||||||||||||
RBAM_000250__     51 TGTGGTCGGACAGGAACACATTACGAAAACGCTGCAAAATGCCCTTTTGC    100

BSNT_00039___    101 AAAAAAAGTTTTCTCACGCCTATCTGTTTTCCGGGCCAAGAGGAACCGGA    150
                     ||||.||.||||||||.||.|||||||||||.||.||..|.|||||.|||
RBAM_000250__    101 AAAAGAAATTTTCTCATGCATATCTGTTTTCTGGACCGCGGGGAACGGGA    150

BSNT_00039___    151 AAAACCAGTGCAGCCAAAATATTTGCTAAGGCTGTCAACTGTGAACATGC    200
                     ||||||||||||||.|||||||||||.||.||.|||||||||||.||.||
RBAM_000250__    151 AAAACCAGTGCAGCTAAAATATTTGCGAAAGCAGTCAACTGTGAGCACGC    200

BSNT_00039___    201 TCCTGTTGATGAGCCATGCAACGAATGTGCGGCCTGTAAAGGGATAACAA    250
                     .||.||.||.||.||.|||||.|||||||||||.||.||.|||||.||||
RBAM_000250__    201 CCCCGTAGAAGAACCGTGCAATGAATGTGCGGCGTGCAAGGGGATCACAA    250

BSNT_00039___    251 ACGGGTCAATATCCGATGTCATAGAAATTGACGCCGCTTCTAATAACGGT    300
                     ||||.||.|||||.|||||.||.|||||.||.||.||.||.||||||||.
RBAM_000250__    251 ACGGCTCTATATCAGATGTGATTGAAATAGATGCGGCGTCGAATAACGGC    300

BSNT_00039___    301 GTTGATGAGATTCGTGACATTCGCGATAAAGTGAAGTTTGCCCCATCGGC    350
                     ||.||.||.||.||.|||||.||.||.|||||.||.||.|||||.|||||
RBAM_000250__    301 GTAGACGAAATCCGCGACATCCGTGACAAAGTAAAATTCGCCCCGTCGGC    350

BSNT_00039___    351 CGTCACATATAAGGTATATATCATAGATGAGGTGCATATGCTTTCTATCG    400
                     ||||||.||.||.||||||||.||||||||||||||||||||.|||||||
RBAM_000250__    351 CGTCACCTACAAAGTATATATTATAGATGAGGTGCATATGCTCTCTATCG    400

BSNT_00039___    401 GCGCTTTTAATGCATTACTAAAAACATTAGAAGAGCCGCCTGAGCATTGT    450
                     ||||.||.|||||..|.||.|||||..|.|||||.|||||.|..|||||.
RBAM_000250__    401 GCGCATTCAATGCGCTTCTGAAAACGCTGGAAGAACCGCCGGCACATTGC    450

BSNT_00039___    451 ATCTTCATATTAGCAACAACTGAACCGCACAAAATTCCTTTAACCATTAT    500
                     ||.|||||||||||.||.|||||.||.||.||.|||||||||||||||||
RBAM_000250__    451 ATTTTCATATTAGCTACGACTGAGCCTCATAAGATTCCTTTAACCATTAT    500

BSNT_00039___    501 CTCTAGATGTCAGCGTTTTGACTTTAAACGAATTACCTCCCAAGCGATTG    550
                     |||.||||||||||||||||||||.|||||.|||||.|||.||||.||||
RBAM_000250__    501 CTCCAGATGTCAGCGTTTTGACTTCAAACGGATTACATCCAAAGCAATTG    550

BSNT_00039___    551 TAGGGCGCATGAATAAAATTGTTGATGCTGAACAGCTGCAAGTGGAGGAA    600
                     |.||.||.|||||.|.|||.||.|||||.||.||||||.|.|||||.|||
RBAM_000250__    551 TCGGACGAATGAAGACAATCGTCGATGCAGAGCAGCTGAAGGTGGAAGAA    600

BSNT_00039___    601 GGATCGCTGGATATCATCGCGAGTGCTGCAGACGGAGGGATGAGGGATGC    650
                     |||.|.||.||||||||.|||||||||||.||||||||.||||||||.||
RBAM_000250__    601 GGAGCCCTTGATATCATAGCGAGTGCTGCGGACGGAGGAATGAGGGACGC    650

BSNT_00039___    651 CCTGAGCCTTCTTGATCAGGCCATATCATTCAGCGGCGATATCCTGAAAG    700
                     .||||||||.||.|||||.|||.||||||||||||||||....|||...|
RBAM_000250__    651 GCTGAGCCTGCTCGATCAAGCCGTATCATTCAGCGGCGAGGAGCTGTCGG    700

BSNT_00039___    701 TCGAAGATGCGCTTTTAATTACGGGTGCTGTTTCTCAATTATATATCGGG    750
                     |.||.|||||..|..|.|||||.||.||.||||||||....|||||.||.
RBAM_000250__    701 TGGATGATGCATTGCTCATTACCGGAGCCGTTTCTCAGCACTATATTGGA    750

BSNT_00039___    751 AAGCTTGCACAATCCCTGCATGATAAAAACGTTTCTGACGCACTGGAAAC    800
                     ||.||.|||....|.||.||....|||.|.|||||.||.|||.|||||||
RBAM_000250__    751 AAACTGGCATCTGCTCTTCACCGCAAACAGGTTTCCGAGGCATTGGAAAC    800

BSNT_00039___    801 ATTAAATGAATTGCTTCAGCAAGGAAAAGATCCAGCTAAGCTGATAGAAG    850
                     |.|.|||||||||||.||||||||.||||||.|.||.||.|||||.||||
RBAM_000250__    801 ACTGAATGAATTGCTCCAGCAAGGGAAAGATGCGGCCAAACTGATTGAAG    850

BSNT_00039___    851 ATATGATTTTCTATTTCAGGGACATGCTGCTGTACAAAACAGCCCCTGGC    900
                     ||||||||||||||||||||||.|||||..|||||.|..|.||.||.||.
RBAM_000250__    851 ATATGATTTTCTATTTCAGGGATATGCTCTTGTACCAGGCCGCTCCCGGT    900

BSNT_00039___    901 TTAGAGGGAGTGCTTGAGAAAGTAAAAGTCGATGAAACGTTCCGGAAACT    950
                     |||||.|||||.||.|||||.||.||.||||||||||||||.|||||.||
RBAM_000250__    901 TTAGAAGGAGTCCTGGAGAAGGTGAAGGTCGATGAAACGTTTCGGAATCT    950

BSNT_00039___    951 AAGTGAACAAATTCCGGCTCAGGCCCTATATGAAATGATTGATATTCTGA   1000
                     .||.|...|.||.|||||.|..||..|||||||.|||||||||||.||||
RBAM_000250__    951 GAGCGGTGACATACCGGCCCCCGCTTTATATGAGATGATTGATATCCTGA   1000

BSNT_00039___   1001 ACAAGAGCCATCAGGAAATGAAATGGACAAATCATCCGCGTATCTTTTTC   1050
                     ||||.|||||||||||||||||.|||||.||.||.||..|.||||||||.
RBAM_000250__   1001 ACAAAAGCCATCAGGAAATGAAGTGGACGAACCACCCAAGAATCTTTTTT   1050

BSNT_00039___   1051 GAAGTGGCCGTTGTGAAGATTTGCCAAACCTCACATCAATCTGCTGCTGA   1100
                     ||||||||.||.|||||.||.|||||.||..||||.|||||.||.|..||
RBAM_000250__   1051 GAAGTGGCTGTCGTGAAAATATGCCAGACGGCACAGCAATCCGCCGGAGA   1100

BSNT_00039___   1101 TCTCCCGGAAGTGGATATGCTGATGAAAAAAATCCAGCAGCTCGAACAGG   1150
                     ..||||.||.||.|..|||||||||||.||.||.||||||||.||.||||
RBAM_000250__   1101 CATCCCTGAGGTCGGCATGCTGATGAATAAGATTCAGCAGCTTGAGCAGG   1150

BSNT_00039___   1151 AAGTAGAGCGGCTCAAAACAACGGGCATAAAAG--CAGCTGCGGAAAGC-   1197
                     |||||||..||||.|||||..|.||..|.||.|  |||.|  ||||||| 
RBAM_000250__   1151 AAGTAGAAAGGCTGAAAACCTCTGGTGTGAAGGTTCAGAT--GGAAAGCG   1198

BSNT_00039___   1198 --CCGAAAAAAGAAGCGCCGCGTGTGCCAAAGGGCGGGAAATCCAATTAC   1245
                       |||   ||||||||.||||||...|.|||.|||||.|||..|.|||||
RBAM_000250__   1199 CTCCG---AAAGAAGCTCCGCGTCCTCAAAAAGGCGGAAAAAGCCATTAC   1245

BSNT_00039___   1246 AAAGCGCCAGTAGGCAGAATTCATGAGATTTTGAAGGAAGCCACAAGACC   1295
                     |||||.||.||.||.||||||||||||||.||||||||||||||.|||||
RBAM_000250__   1246 AAAGCTCCGGTCGGAAGAATTCATGAGATATTGAAGGAAGCCACCAGACC   1295

BSNT_00039___   1296 GGATCTTGATCTGCTCAGAAACAGTTGGGGCAAGCTTCTTGCTCATCTCA   1345
                     .||.|||||.|.|||.|.||.|||.|||||||||||.||.||.||.||.|
RBAM_000250__   1296 TGAACTTGAACAGCTTAAAAGCAGCTGGGGCAAGCTGCTGGCACACCTGA   1345

BSNT_00039___   1346 AACAGCAAAACAAAGTATCGCATGCCGCTTTGCTGAATGACAGTGAACCT   1395
                     |||||||.||.||.||.||.|||||.|||.||.||||||||||||||||.
RBAM_000250__   1346 AACAGCAGAATAAGGTGTCTCATGCGGCTCTGTTGAATGACAGTGAACCG   1395

BSNT_00039___   1396 GTGGCTGCCGGATCGGC------GGCATTTGTTCTGAAATTCAAATATGA   1439
                     |||||||      |.||      |||||||||.||.|||||.|||||.||
RBAM_000250__   1396 GTGGCTG------CTGCTCAAAAGGCATTTGTGCTTAAATTTAAATACGA   1439

BSNT_00039___   1440 AATTCATTGTAAAATGGTTGCTGAGGATAACAACGGAGTCCGGACTAATC   1489
                     |||.|||||||||||||||||.||.||.||.|||||||||||.||.||||
RBAM_000250__   1440 AATCCATTGTAAAATGGTTGCAGAAGACAATAACGGAGTCCGTACGAATC   1489

BSNT_00039___   1490 TTGAGCAGATTTTAGAATCGATGCTCGGAAAAAGAATGGATTTGATTGGC   1539
                     ||||.||||||.|.|||||.||||||||.|||||||||||||||||||||
RBAM_000250__   1490 TTGAACAGATTCTCGAATCAATGCTCGGGAAAAGAATGGATTTGATTGGC   1539

BSNT_00039___   1540 GTTCCAGAAGCACAATGGGGTAAAATAAGAGAAGAATTTTTAGAAGATCA   1589
                     |||||.||||||||||||||||||||||||||||||||||||.|.|||||
RBAM_000250__   1540 GTTCCGGAAGCACAATGGGGTAAAATAAGAGAAGAATTTTTAAATGATCA   1589

BSNT_00039___   1590 TCAGCAGGAAAATGAAGGATCAAATGAACCGGCTGAAGAAGACCCGCTTA   1639
                     .||||||||||.||||||||||||.|||||||||||||||||.|||||.|
RBAM_000250__   1590 CCAGCAGGAAAGTGAAGGATCAAACGAACCGGCTGAAGAAGATCCGCTGA   1639

BSNT_00039___   1640 TTGCCGAAGCGAAAAAGCTTGTTGGAGCGGATTTAATTGAAATAAAAGAC   1689
                     ||||.||.||||||||.|||||.||||||||||||||.||||||||||||
RBAM_000250__   1640 TTGCAGAGGCGAAAAAACTTGTCGGAGCGGATTTAATCGAAATAAAAGAC   1689

BSNT_00039___   1690 TAA   1692
                     |||
RBAM_000250__   1690 TAA   1692


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